| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 1,751,256 | G→A | 52.8% | intergenic (‑42/‑165) | yfiF ← / → trxC | predicted methyltransferase/thioredoxin 2 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 1,751,256 | 0 | G | A | 52.8% | 0.9 / 48.4 | 36 | intergenic (‑42/‑165) | yfiF/trxC | predicted methyltransferase/thioredoxin 2 |
| Reads supporting (aligned to +/- strand): ref base G (8/9); new base A (12/7); total (20/16) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.03e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TTACCTTTCATTTCATCGTTCATGCTTTTCTCCACCAGCGCTGCGCGAAGCGCGCAGATTACCCGAAGTCCGCGCGGTTCGCCATGATTTCGTACCAAAGCCTGCGACTATCATACCTATTGAATAAAACAGA > Exported/1751192‑1751324 | ttACCTTTCATTTCATCGTTCATGCTTTTCTCCACCAGCGCTGCGCGAAGCGCGCAGATTACCCGAAGTcc > 1:731719/1‑71 (MQ=255) tACCTTTCATTTCATCGTTCATGCTTTTCTCCACCAGCGCTGCGCGAAGCGCGCAGATTACCCGAAGTCcg > 1:395485/1‑71 (MQ=255) atttcatCGTTCATGCTTTTCTCCACCAGCGCTGCGCGAAGCGCGCAGATTACCCGAAGTCCGCGCGGtt < 1:1656647/70‑1 (MQ=255) tttcatCGTTCATGCTTTTCTCCACCAGCGCTGCGCGAAGCGCGCAGATTACCCAAAGTCCGCGCGGTTCg < 1:2380880/71‑1 (MQ=255) gTTCATGCTTTTCTCCACCAGCGCTGCGCGAAGCGCGCAGATTACCCAAAGTCCGCGCGGTTCGCCATGAt > 1:94813/1‑71 (MQ=255) cATGCTTTTCTCCACCAGCGCTGCGCGAAGCGCGCAGATTACCCGAAGTCCGCGCGGTTCGCCATGAttt < 1:2858807/70‑1 (MQ=255) cTTTTCTCCACCAGCGCTGCGCGAAGCGCGCAGATTACCCGAAGTCCGCGCGGTTCGCCATGATTTCGTAc > 1:229364/1‑71 (MQ=255) ttCTCCACCAGCGCTGCGCGAAGCGCGCAGATTACCCAAAGTCCGCGCGGTTCGCCATGATTTCGTAcc > 1:680782/1‑69 (MQ=255) ccaccaGCGCTGCGCGAAGCGCGCAGATTACCCAAAGTCCGCGCGGtt > 1:2720768/1‑48 (MQ=255) ccaccaGCGCTGCGCGAAGCGCGCAGATTACCCAAAGTCCGCGCGGTTc > 1:191303/1‑49 (MQ=255) ccaccaGCGCTGCGCGAAGCGCGCAGATTACCCAAAGTCCGCGCGGTTc > 1:1513142/1‑49 (MQ=255) cTGCGCGAAGCGCGCAGATTACCCAAAGTCCGCGCGGTTCGCCATGATTTAGTACCAAAGCCTGCGACTAt < 1:147126/71‑1 (MQ=255) tGCGCGAAGCGCGCAGATTACCCAAAGTCCGCGCGGTTCGCCATGATTTCGTACCAAAGCCTGCGACTAt > 1:2309129/1‑70 (MQ=255) cgAAGCGCGCAGATTACCCAAAGTCCGCGCGGTTCGCCATGATTTCGTACCAAAGCCTGCGACTATCATAc > 1:3642418/1‑71 (MQ=255) gAAGCGCGCAGATTACCCGAAGTCCGCGCGGTTCGCCATGATTTCGTACCAAAGc > 1:2565944/1‑55 (MQ=255) gAAGCGCGCAGATTACCCGAAGTCCGCGCGGTTCGCCATGATTTCGTACCAAAGCCTGc < 1:1732435/59‑1 (MQ=255) gAAGCGCGCAGATTACCCGAAGTCCGCGCGGTTCGCCATGATTTCGTACCAAAGCCTGc < 1:828747/59‑1 (MQ=255) aaGCGCGCAGATTACCCAAAGTCCGCGCGGTTCGCCATGATTTCGTACCAAAGCCTGCGACTATCATACCt < 1:2740485/71‑1 (MQ=255) aaGCGCGCAGATTACCCAAAGTCCGCGCGGTTCGCCATGATTTCGTACCAAAGCCTGCGACTATCATACCt < 1:3288003/71‑1 (MQ=255) aGCGCGCAGATTACCCAAAGTCCGCGCGGTTCGCCATGATTTCGTACCAAAGCCTGCGACTATCATACCTa > 1:1124383/1‑71 (MQ=255) gcgcgcAGATTACCCAAAGTCCGCGCGGTTCGCCATGATTTCGTACCAAAGCCTGCGACTATCATACCt < 1:3028190/69‑1 (MQ=255) gcAGATTACCCAAAGTCCGCGCGGTTCGCCATGATTTCGTACCAAAGCCTGCGACTATCAt < 1:788859/61‑1 (MQ=255) gcAGATTACCCAAAGTCCGCGCGGTTCGCCATGATTTCGTACCAAAGCCTGCGACTATCAt < 1:760777/61‑1 (MQ=255) cAGATTACCCAAAGTCCGCGCGGTTCGCCATGATTTCGTACCAAAGCCTGCGACTATCATACCTATTGaa > 1:1418955/1‑70 (MQ=255) cAGATTACCCAAAGTCCGCGCGGTTCGACATGATTTCGTACCAAAGCCTGCGACTATCATACCTATTGaa > 1:84193/1‑70 (MQ=255) gATTACCCGAAGTCCGCGCGGTTCGCCATGATTTCGTACCAAAGCCTGCGCCTATCATACCTATTGAATa > 1:2977405/1‑70 (MQ=255) aTTACCCGAAGTCCGCGCGGTTCGCCATGATTTCGTAc < 1:2943929/38‑1 (MQ=255) aTTACCCGAAGTCCGCGCGGTTCGCCATGATTTCGTAc < 1:3367538/38‑1 (MQ=255) aTTACCCGAAGTCCGCGCGGTTCGCCATGATTTCGTAc < 1:2306262/38‑1 (MQ=255) aTTACCCGAAGTCCGCGCGGTTCGCCATGATTTCGTAc < 1:3687355/38‑1 (MQ=255) aTTACCCAAAGTCCGCGCGGTTCGCCATGATTTCGTACCAAAGCCTGCGACTATCATACCTATTGAATaa > 1:2861636/1‑70 (MQ=255) ttACCCGAAGTCCGCGCGGTTCGCCATGATTTCGTACCAACGCCTGCGACTATCATACCTATTGAATaaaa > 1:1220815/1‑71 (MQ=255) ttACCCGAAGTCCGCGCGGTTCGCCATGATTTCGTACCAAAGCCTGCGACTATCATACCTATTGAATaaaa > 1:3657688/1‑71 (MQ=255) ttACCCGAAGTCCGCGCGGTTCGCCATGATTTCGTACCAAAGCCTGCGACTATCATACCTATTGAATaaaa > 1:3548457/1‑71 (MQ=255) tACCCAAAGTCCGCGCGGTTCGCCATGATTTCGTACCAAAGCCTGCGACTATCATACCTATTGAATaaaa > 1:2054966/1‑70 (MQ=255) ccGAAGTCCGCGCGGTTCGCCATGATTTCGTACCAAAGCCTGCGACTATCATACCTATTGAATAAAACAGa < 1:2248947/71‑1 (MQ=255) | TTACCTTTCATTTCATCGTTCATGCTTTTCTCCACCAGCGCTGCGCGAAGCGCGCAGATTACCCGAAGTCCGCGCGGTTCGCCATGATTTCGTACCAAAGCCTGCGACTATCATACCTATTGAATAAAACAGA > Exported/1751192‑1751324 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |