Predicted mutation
evidence seq id position mutation freq annotation gene description
RA Exported 1,869,838 G→A 14.9% intergenic (‑83/‑236) ygcW ← / → yqcE predicted deoxygluconate dehydrogenase/predicted transporter

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*Exported1,869,8380GA14.9% 121.4 / 12.2 47intergenic (‑83/‑236)ygcW/yqcEpredicted deoxygluconate dehydrogenase/predicted transporter
Reads supporting (aligned to +/- strand):  ref base G (15/25);  new base A (3/4);  total (18/29)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01

TAAGGCAAAAAAAAAGAAAGGTAACTTCCCCCGCGAGAGGGAAGTTACCTTTCTCATTATCTCTGGTAACTGGAGATAATTTTTAGCATAAGGGCATAACTGCTAATGTGATCGTAATCACAGTGTGATATT  >  Exported/1869774‑1869905
                                                                |                                                                   
tAAGGCAAAAAAAAAGAAAGGTAACTTCCCCCGCGAGAGGGAAGTTACCTTTCTCATTATCTCTGGTAACt                                                               <  1:2145670/71‑1 (MQ=255)
 aaGGCAAAAAAAAAGAAAGGTAACTTCCCCCGCGAGAGGGAAGTTACCTTTCTCATTATCTCTGGTAACTg                                                              >  1:1814645/1‑71 (MQ=255)
     cAAAAAAAAAGAAAGGTAACTTCCCCCGCGAGAGGGAAGTTACCTTTCTCATTATCTCTGGTAACTg                                                              >  1:2239880/1‑67 (MQ=255)
       aaaaaaaaGAAAGGTAACTTCCCCCGCGAGAGGGAAGTTACCTTTCTCATTATCTCTGGTAACTGGAGATa                                                        <  1:1804641/71‑1 (MQ=255)
          aaaaaGAAAGGTAACTTCCCCCGCGAGAGGGAAGTTACCTTTCTCATTATCTCTGGTAACTGGAGATAAtt                                                     <  1:2455263/71‑1 (MQ=255)
           aaaaGAAAGGTAACTTCCCCCGCGAGAGGGAAGTTAGCTTTCTCATTATCTCTGGTAACTGGAGATAAttt                                                    <  1:3046743/71‑1 (MQ=255)
                  agGTAACTTCCCCCGCGAGAGGGAAGTTACCTTTCTCATTATCTCTGGTAACTGGAGATAAttttt                                                  >  1:2418009/1‑66 (MQ=255)
                  agGTAACTTCCCCCGCGAGAGGGAAGTTACCTTTCTCATTATCTCTGGTAACTGGAGATAAttttt                                                  >  1:1892464/1‑66 (MQ=255)
                     tAACTTCCCTCTCGCGGGGGAAGTTACCTTTCTCATTATCTCTGGTAACTGGAGATAAtttt                                                   <  1:63067/62‑1 (MQ=18)
                      aaCTTCCCCCGCGAGAGGGAAGTTACCTTTCTCATTATCTCTGGTAACTGGAGATAATTTTTAGCATAAgg                                         >  1:2417531/1‑71 (MQ=255)
                        cTTCCCCCGCGAGAGGGAAGTTACCTTTCTCATTATCTCTGGTAACTg                                                              <  1:2274610/48‑1 (MQ=255)
                        cTTCCCCCGCGAGAGGGAAGTTACCTTTCTCATTATCTCTGGTAACTGGAGATAATTTTTAGCATAAGGGc                                       <  1:971573/71‑1 (MQ=255)
                        cTTCCCCCGCGAGAGGGAAGTTACCTTTCTCATTATCTCTGGTAACTGGAGATAATTTTTAGCATAAGGGc                                       <  1:3019708/71‑1 (MQ=255)
                              ccGCGAGAGGGAAGTTACCTTTCTCATTATCTCCAGTTACCAGAGATa                                                        <  1:3161944/48‑1 (MQ=18)
                              ccGCGAGAGGGAAGTTACCTTTCTCATTATCTCCAGTTACCAGAGATa                                                        <  1:540346/48‑1 (MQ=18)
                              ccGCGAGAGGGAAGTTACCTTTCTCATTATCTCCAGTTACCAGAGATa                                                        <  1:358919/48‑1 (MQ=18)
                               cgcgAGAGGGAAGTTACCTTTCTCATTATCTCCAGTTACCAGAGATa                                                        <  1:2109267/47‑1 (MQ=17)
                                    gagGGAAGTTACCTTTCTCATTATCTCTGGTAACTGGAGATAATTTTTAGCAt                                             <  1:2564393/53‑1 (MQ=255)
                                    gagGGAAGTTACCTTTCTCATTATCTCTGGTAACTGGAGATAATTTTTAGCAt                                             <  1:2046539/53‑1 (MQ=255)
                                     agGGAAGTTACCTTTCTCATTATCTCTGGTAACTGGAGATAATTTTTAGCATaa                                           <  1:302233/54‑1 (MQ=255)
                                     agGGAAGTTACCTTTCTCATTATCTCTGGTAACTGGAGATAATTTTTAGCATaa                                           <  1:3494779/54‑1 (MQ=255)
                                      gggAAGTTACCTTTCTCATTATCTCTGGTAACTGGAGATAATTTTTAGCATAAGGGCATAACTGCTAAtg                          <  1:451818/70‑1 (MQ=255)
                                         aaGTTACCTTTCTCATTATCTCTGGTAACTGGAGATAATTTTTAGCATAAGGGCATAACTGCTaa                            >  1:2668396/1‑65 (MQ=255)
                                          aGTTACCTTTCTCATTATCTCTGGTAACTGGAGATaa                                                       >  1:1540389/1‑37 (MQ=255)
                                            ttACCTTTCTCATTATCTCTGGTAACTGGAGATAAttt                                                    <  1:1835682/38‑1 (MQ=255)
                                             tACCTTTCTCATTATCTCTGGTAACTGGAGATAATTTTTAGCATAAGGGCAt                                     <  1:3293523/52‑1 (MQ=255)
                                                 tttCTCATTATCTCTGGTAACTGGAGATAATTTTTAGCATAAGGGCATAACTg                                <  1:425748/53‑1 (MQ=255)
                                                   tctcATTATCTCTGGTAACTGGAGATAATTTTTAg                                                >  1:1581150/1‑35 (MQ=255)
                                                       aTTATCTCTGGTAACTGGAGATAATTTTTAGCATAAGGGCATAACTGCTAATGTGATCGTAATCACAgtg         <  1:6439/70‑1 (MQ=255)
                                                       aTTATCTCTGGTAACTGGAGATAATTTTTAGCATAAGGGCATAACTGCTAATGTGATCGTAATCACAgt          <  1:2383951/69‑1 (MQ=255)
                                                       aTTATCTCTGGTAACTGGAGATAATTTTTAGCATAAGGGCATAACTGCTAATGTGATCGTAATCACAgt          <  1:760187/69‑1 (MQ=255)
                                                       aTTATCTCTGGTAACTGGAGATAATTTTTAGCATAAGGGCATAACTGCTAATGTGATCGTAATCACAg           <  1:987674/68‑1 (MQ=255)
                                                        ttATCTCTGGTAACTGGAGATAATTTTTAGCATaa                                           <  1:309263/35‑1 (MQ=255)
                                                        ttATCTCTGGTAACTGGAGATAATTTTTAGCATAAGGGCa                                      <  1:2783323/40‑1 (MQ=255)
                                                        ttATCTCTGGTAACTGGAGATAATTTTTAGCATAAGGGCa                                      <  1:1353227/40‑1 (MQ=255)
                                                        ttATCTCCAGTTACCAGAGATAATTTTTAGCATAAGGGCATAACTGCTAATGTGATCGTAATCACAgtgt        >  1:81907/1‑70 (MQ=37)
                                                        ttATCTCCAGTTACCAGAGATAATTTTTAGCATAAGGGCATAACTGCTAATGTGATCGTAATCACAgtg         >  1:3003727/1‑69 (MQ=25)
                                                        ttATCTCCAGTTACCAGAGATAATTTTTAGCATAAGGGCATAACTGCTAATGTGATCGTAATCACAgtg         >  1:2140658/1‑69 (MQ=25)
                                                          aTCTCTGGTAACTGGAGATAATTTTTAGCATAAGGGCATa                                    >  1:3629166/1‑40 (MQ=255)
                                                          aTCTCTGGTAACTGGAGATAATTTTTAGCATAAGGGCATa                                    >  1:1828557/1‑40 (MQ=255)
                                                          aTCTCTGGTAACTGGAGATAATTTTTAGCATAAGGGCATAACTGCTAATGTGATCGTAATCACAGTGTGa      <  1:3043639/70‑1 (MQ=255)
                                                           tctcTGGTAACTGGAGATAATTTTTAGCATAAGGGCATAACTGCTAATGTGATCGTAATCACAGTGTGata    >  1:394953/1‑71 (MQ=255)
                                                             tctGGTAACTGGAGATAATTTTTAGCATAAGGGCATAACTGCTAATGTGATCGTAATCACAGTGTGATAtt  >  1:827119/1‑71 (MQ=255)
                                                             tctGGTAACTGGAGATAATTTTTAGCATAAGGGCATAACTGCTAATGTGATCGTAATCACAGTGTGATAtt  >  1:1316923/1‑71 (MQ=255)
                                                              ctGGTAACTGGAGATAATTTTTAGCATAAGGGCATAACTGCTAAt                           >  1:1221890/1‑45 (MQ=255)
                                                              ctGGTAACTGGAGATAATTTTTAGCATAAGGGCATAACTGCTAAt                           >  1:2458626/1‑45 (MQ=255)
                                                               tGGTAACTGGAGATAATTTTTAGCATAAGGGCATAACTGCTAATGTGATCGTAATCACAGTGTGatat   <  1:3005014/68‑1 (MQ=255)
                                                                |                                                                   
TAAGGCAAAAAAAAAGAAAGGTAACTTCCCCCGCGAGAGGGAAGTTACCTTTCTCATTATCTCTGGTAACTGGAGATAATTTTTAGCATAAGGGCATAACTGCTAATGTGATCGTAATCACAGTGTGATATT  >  Exported/1869774‑1869905

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: