| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 1,927,871 | T→C | 13.9% | K450R (AAA→AGA) | araE ← | arabinose transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 1,927,871 | 0 | T | C | 13.9% | 246.4 / 27.7 | 95 | K450R (AAA→AGA) | araE | arabinose transporter |
| Reads supporting (aligned to +/- strand): ref base T (39/42); new base C (8/5); total (48/47) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.52e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 103 total aligned reads displayed.
TCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTGGTTTCCGGAATGAGCCAGAAAGTAATGCCCACAAACGCAATGTTCAGCGCAGTGTAGAGCCAGAACG > Exported/1927801‑1927940 | tCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACAtttt < 1:2520997/71‑1 (MQ=255) cGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTGGTTTcc < 1:588279/71‑1 (MQ=255) atatTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTGGTTTCCgg < 1:1805512/71‑1 (MQ=255) tatTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTGGTTTCCgg > 1:547438/1‑70 (MQ=255) ttCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTGGTTTCCGGAAt > 1:2827329/1‑70 (MQ=255) tcAACTTCTCGCCTGCCTTCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTATGGTTTCCGGAATGAGc > 1:2933423/1‑71 (MQ=255) aaCTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTGGTTTCCGGa > 1:3606371/1‑63 (MQ=255) aaCTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTGGTTTCCGGAATGAGc < 1:3062141/69‑1 (MQ=255) aaCTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTGGTTTCCGGAATGAGc > 1:426737/1‑69 (MQ=255) cTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTGGTTTCCGGAATGAGCCAGa < 1:452167/71‑1 (MQ=255) tctcGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTGGTTTCCGGAAAGAGCCAGa > 1:77919/1‑69 (MQ=255) ctcGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTGGTTTCCGGAATGAGCCAGaaa < 1:3167901/70‑1 (MQ=255) ctcGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTCTGGTTTCCGGAATGAGCCAGaa < 1:1263220/69‑1 (MQ=255) ctcGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTCTGGTTTCCGGAATGAGCCAGaa < 1:1905991/69‑1 (MQ=255) tcGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTGGTTTCCGGAATGAGCCAGAAAg > 1:1121639/1‑70 (MQ=255) tcGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTGGTTTCCGGAATGAGCCAGAAAg > 1:1098087/1‑70 (MQ=255) cGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTCTGGTTTCCGGAATGAGCCAGaa < 1:928204/67‑1 (MQ=255) ccTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTGGTTTCCGGAATGAGCCAGAAAGTAAt < 1:2484800/71‑1 (MQ=255) ccTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTGGTTTCCGGAATGAGCCAGAAAGTAAt < 1:1616532/71‑1 (MQ=255) ccTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTCTGGTTTCCGGAATGAGCCAGAAAGTAAt > 1:2088160/1‑71 (MQ=255) ccTGCCATCAGTTTGCGTTCGATATGTTACAGCGTGACATTTCTGGTTTCCGGAATGAGCCAGAAAGTAAt > 1:1394892/1‑71 (MQ=255) tGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTGGTTTCCGGAATGAGCCAGa < 1:425375/62‑1 (MQ=255) tGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTGGTTTCCGGAATGAGCCAGa < 1:2109820/62‑1 (MQ=255) ccATCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTGGTTTCCGGAATGAGCCAGAAAGTAATGcc > 1:3705202/1‑70 (MQ=255) cATCAGTTTGCGTTCGATATGTTCCAGCGTGACAtttt > 1:2224650/1‑38 (MQ=255) cATCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTGGTTTCCGGaa < 1:1975497/50‑1 (MQ=255) cATCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTGGTTTCCGGaa < 1:601939/50‑1 (MQ=255) aTCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTGGTTTCCGGAATGAGCCAGAAAGTAATGCCca > 1:1033025/1‑70 (MQ=255) tCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTGGTTTCCGGAATg > 1:2571206/1‑50 (MQ=255) tCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTGGTTTCCGGAATGAGCCAGa < 1:977805/57‑1 (MQ=255) tCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTGGTTTCCGGAATGAGCCAGa < 1:403349/57‑1 (MQ=255) tCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTGGTTTCCGGAATGAGCCAGa < 1:535757/57‑1 (MQ=255) tttGCGTTCGATATGTTCCAGCGTGACATTTTTGGTTTCCgg < 1:3162257/42‑1 (MQ=255) tttGCGTTCGATATGTTCCAGCGTGACATTTTTGGTTTCCGGAATGAGCCAGAAAGTaa > 1:2976791/1‑59 (MQ=255) tttGCGTTCGATATGTTCCAGCGTGACATTTTTGGTTTCCGGAATGAGCCAGAAAGTaa > 1:1805709/1‑59 (MQ=255) tttGCGTTCGATATGTTCCAGCGTGACATTTTTGGTTTCCGGAATGAGCCAGAAAGTAATGCCCACAAACg < 1:962127/71‑1 (MQ=255) ttGCGTTCGATATGTTCCAGCGTGACATTTTTGGTTTCCgg < 1:978630/41‑1 (MQ=255) tGCGTTCGATATGTTCCAGCGTGACATTTTTGGTTTCCGGaa > 1:3674905/1‑42 (MQ=255) tGCGTTCGATATGTTCCAGCGTGACATTTTTGGTTTCCGGaa > 1:3007429/1‑42 (MQ=255) tGCGTTCGATATGTTCCAGCGTGACATTTTTGGTTTCCGGaa > 1:1083493/1‑42 (MQ=255) tGCGTTCGATATGTTCCAGCGTGACATTTTTGGTTTCCGGaa > 1:3619952/1‑42 (MQ=255) tGCGTTCGATATGTTCCAGCGTGACATTTTTGGTTTCCGGAATGAGcc > 1:1079104/1‑48 (MQ=255) tGCGTTCGATATGTTCCAGCGTGACATTTTTGGTTTCCGGAATGAGCCAGAAAGTAATGCCCACAAACGc < 1:2145800/70‑1 (MQ=255) gTTCGATATGTTCCAGCGTGACATTTTTGGTTTCCGGAATGa < 1:1339683/42‑1 (MQ=255) gTTCGATATGTTCCAGCGTGACATTTTTGGTTTCCGGAATGAGCCAGAAAGTAATGCCCACAAACGCAATg < 1:1603902/71‑1 (MQ=255) ttCGATATGTTCCAGCGTGACATTTTTGGTTTCCGGAATGAGCCAGAAAGt < 1:1396682/51‑1 (MQ=255) ttCGATATGTTCCAGCGTGACATTTTTGGTTTCCGGAATGAGCCAGAAAGTAATGCCCACAAACGCAATGt > 1:591082/1‑71 (MQ=255) tCGATATGTTCCAGCGTGACATTTTTGGTTTCCGGAATGAGc > 1:1205308/1‑42 (MQ=255) tCGATATGTTCCAGCGTGACATTTTTGGTTTCCGGAATGAGc > 1:281755/1‑42 (MQ=255) tCGATATGTTCCAGCGTGACATTTTTGGTTTCCGGAATGAGc > 1:309039/1‑42 (MQ=255) tCGATATGTTCCAGCGTGACATTTTTGGTTTCCGGAATGAGCCAGAAAGTAATGCCCACAAACGCAATGtt > 1:3410629/1‑71 (MQ=255) agATATGTTCCAGCGTGACATTTTTGGTTTCCGGAATGAGCCAGAAAGTAATGCCCACAAACGCAATGtt > 1:3624714/2‑70 (MQ=255) gATATGTTCCAGCGTGACATTTTTGGTTTCCGGAATGAGCCAGa < 1:318013/44‑1 (MQ=255) atatGTTCCAGCGTGACATTTTTGGTTTCCGGAATGAGCCAGAAAGTAATGCCCACAAACGCAATGTTCAg > 1:317069/1‑71 (MQ=255) tGTTCCAGCGTGACATTTTTGGTTTCCGGAATGAGCCAGAAAGTAATGCCCACAAACGCAATGTTCa < 1:1327799/67‑1 (MQ=255) tGTTCCAGCGTGACATTTTTGGTTTCCGGAATGAGCCAGAAAGTAATGCCCACAAACGCAATGTTCAgcg > 1:2115921/1‑70 (MQ=255) ttCCAGCGTGACATTTCTGGTTTCCGGAATGAGCCAGAAAGTAATGCCCACAAACGCAATGTTCAGCGCAg < 1:946137/71‑1 (MQ=255) tCCAGCGTGACATTTTTGGTTTCCGGAATGAGCCAGaaa > 1:396912/1‑39 (MQ=255) tCCAGCGTGACATTTTTGGTTTCCGGAATGAGCCAGaaa > 1:3009586/1‑39 (MQ=255) tCCAGCGTGACATTTTTGGTTTCCGGAATGAGCCAGaaa > 1:3019310/1‑39 (MQ=255) tCCAGCGTGACATTTTTGGTTTCCGGAATGAGCCAGAAAGTAATGCCCACAAACGCAATGTTCAGCGCAgt > 1:2741682/1‑71 (MQ=255) ccAGCGTGACATTTTTGGTTTCCGGAATGAGCCAGAAAGTAAt < 1:2855685/43‑1 (MQ=255) ccAGCGTGACATTTTTGGTTTCCGGAATGAGCCAGAAAGTAAt < 1:172065/43‑1 (MQ=255) ccAGCGTGACATTTTTGGTTTCCGGAATGAGCCAGAAAGTAAt < 1:2416594/43‑1 (MQ=255) cAGCGTGACATTTTTGGTTTCCGGAATGAGCCAGAAAGTAATGCCCACAAACGCAATGTTCAGCGCAgtgt < 1:3171711/71‑1 (MQ=255) aGCGTGACATTTTTGGTTTCCGGAATGAGCCAGAAAGTAATGc > 1:790134/1‑43 (MQ=255) aGCGTGACATTTTTGGTTTCCGGAATGAGCCAGAAAGTAATGc > 1:3075325/1‑43 (MQ=255) aGCGTGACATTTTTGGTTTCCGGAATGAGCCAGAAAGTAATGCCcaca < 1:3654641/48‑1 (MQ=255) aGCGTGACATTTTTGGTTTCCGGAATGAGCCAGAAAGTAATGCCcaca < 1:3249104/48‑1 (MQ=255) aGCGTGACATTTTTGGTTTCCGGAATGAGCCAGAAAGTAATGCCcaca < 1:429224/48‑1 (MQ=255) gCGTGACATTTTTGGTTTCCGGAATGAGCCAGAAAGTAATGCCCACAAAc > 1:3065281/1‑50 (MQ=255) gCGTGACATTTTTGGTTTCCGGAATGAGCCAGAAAGTAATGCCCACAAAc > 1:1764082/1‑50 (MQ=255) gCGTGACATTTTTGGTTTCCGGAATGAGCCAGAAAGTAATGCCCACAAACGCAATGTTCAGCGCAgtg > 1:634904/1‑68 (MQ=255) gCGTGACATTTCTGGTTTCCGGAATGAGCCAGAAAGTAATGCCcaca < 1:1772655/47‑1 (MQ=255) cGTGACATTTTTGGTTTCCGGAATGAGCCAGAAAGTat < 1:145966/38‑2 (MQ=255) cGTGACATTTTTGGTTTCCGGAATGAGCCAGAAAGTAATGCCCACAAACGCAATGTTCAGCGCAGTGTaga < 1:519590/71‑1 (MQ=255) cGTGACATTTCTGGTTTCCGGAATGAGCCAGAAAGTAATGCCCACAAACGCAATGTTCAGCGCAGTGTa > 1:2828361/1‑69 (MQ=255) tGACATTTTTGGTTTCCGGAATGAGCCAGAAAGTAATGCCCACAAACGCAATGTTCAGCGCAGTGTAGAGc > 1:3268221/1‑71 (MQ=255) taCATTTTTGGTTTCCGGAATGAGCCAGAAAGTAATGCCCACAAACGCAATGtt < 1:3623675/53‑1 (MQ=255) aCATTTTTGGTTTCCGGAATGAGCCAGAAAGTAATGCCCACAAACGCAATGTTCAGCGCAGTGTAGAGc > 1:469391/1‑69 (MQ=255) cttttttGGTTTCCGGAATGAGCCAGAAAGTAATGCCcaca < 1:3534879/39‑1 (MQ=255) cATTTTTGGTTTCCGGAATGAGCCAGAAAGTAATGCCCACAAACGCAATGTTCa > 1:3213880/1‑54 (MQ=255) cATTTTTGGTTTCCGGAATGAGCCAGAAAGTAATGCCCACAAACGCAATGTTCAGCGCAGTGTAGAGCCAg < 1:1748350/71‑1 (MQ=255) cATTTTTGGTTTCCGGAATGAGCCAGAAAGTAATGCCCACAAACGCAATGTTCAGCGCAGTGTAGAGCCAg < 1:949660/71‑1 (MQ=255) cATTTTTGGTTTCCGGAATGAGCCAGAAAGTAATGCCCACAAACGCAATGTTCAGCGCAGTGTAGAGCCAg < 1:3337334/71‑1 (MQ=255) cATTTTTGGTTTCCGGAATGAGCCAGAAAGTAATGCCCACAAACGCAATGTTCAGCGCAGTGTAGAGCCAg < 1:3587524/71‑1 (MQ=255) aTTTTTGGTTTCCGGAATGAGCCAGAAAGTAATGCCCACAAACGCAATGTTCAGCGCAGTGTAGAGCCAg > 1:456927/1‑70 (MQ=255) aTTTTTGGTTTCCGGAATGAGCCAGAAAGTAATGCCCACAAACGCAATGTTCAGCGCAGTGTAGAGCCAGa < 1:2144165/71‑1 (MQ=255) aTTTTTGGTTTCCGGAATGAGCCAGAAAGTAATGCCCACAAACGCAATGTTCAGCGCAGTGTAGAGCCAGa < 1:1239989/71‑1 (MQ=255) aTTTTTGGTTTCCGGAATGAGCCAGAAAGTAATGCCCACAAACGCAATGTTCAGCGCAGTGTAGAGCCAGa < 1:2361263/71‑1 (MQ=255) aTTTTTGGTTTCCGGAATGAGCCAGAAAGTAATGCCCACAAACGCAATGTTCAGCGCAGTGTAGAGCCAGa < 1:16975/71‑1 (MQ=255) aTTTCTGGTTTCCGGAATGAGCCAGAAAGTAATGCCCACAAAc > 1:3704957/1‑43 (MQ=255) aTTTCTGGTTTCCGGAATGAGCCAGAAAGTAATGCCCACAAACGCAATGTTCAGCGCAGTGTAGAGCCAg > 1:3032463/1‑70 (MQ=255) aTTTCTGGTTTCCGGAATGAGCCAGAAAGTAATGCCCACAAACGCAATGTTCAGCGCAGTGTAGAGCCAg > 1:3362903/1‑70 (MQ=255) aTTTCTGGTTTCCGGAATGAGCCAGAAAGTAATGCCCACAAACGCAATGTTCAGCGCAGTGTAGAGCCAg > 1:530385/1‑70 (MQ=255) aTTTCTGGTTTCCGGAATGAGCCAGAAAGTAATGCCAACAAACGCAATGTTCAGCGCAGTGTAGAGCCAg > 1:493546/1‑70 (MQ=255) tttGGTTTCCGGAATGAGCCAGAAAGTAATGCCcaca > 1:3442509/1‑37 (MQ=255) tttGGTTTCCGGAATGAGCCAGAAAGTAATGCCCACAAACGCAATGTTCAGCGCAGTGTAGAGCCAGAAc < 1:184335/70‑1 (MQ=255) tttGGTTTCCGGAATGAGCCAGAAAGTAATGCCCACAAACGCAATGTTCAGCGCAGTGTAGAGCCAGAAc < 1:371002/70‑1 (MQ=255) tttGGTTTCCGGAATGAGCCAGAAAGTAATGCCCACAAACGCAATGTTCAGCGCAGTGTAGAGCCAGAACg > 1:1768797/1‑71 (MQ=255) | TCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTGGTTTCCGGAATGAGCCAGAAAGTAATGCCCACAAACGCAATGTTCAGCGCAGTGTAGAGCCAGAACG > Exported/1927801‑1927940 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |