| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 2,042,854 | A→G | 11.3% | intergenic (‑202/‑67) | glgS ← / → yqiJ | predicted glycogen synthesis protein/predicted inner membrane protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 2,042,854 | 0 | A | G | 11.3% | 147.4 / 8.8 | 53 | intergenic (‑202/‑67) | glgS/yqiJ | predicted glycogen synthesis protein/predicted inner membrane protein |
| Reads supporting (aligned to +/- strand): ref base A (17/30); new base G (3/3); total (20/33) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.61e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
AAATAAAAAACCATATTAAAAGACTTTCTCTTCCAGAACTTCTCTAACCTGTGTTATTATTAACACAGATAAATGTAAGCAAGGAAACTATTACAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGATAT > Exported/2042786‑2042920 | aaaTAAAAAACCATATTAAAAGACTTTCTCTTCCAGAACTTCTCTAACCTGTGTTATTATTAACACAGATa < 1:3417513/71‑1 (MQ=255) tAAAAAACCATATTAAAAGACTTTCTCTTCCAGAACTTCTCTAACCTGTGTTATTATTAACACAGATaaa > 1:374216/1‑70 (MQ=255) aaaaaCCATATTAAAAGACTTTCTCTTCCAGAACTTCTCTAACCTGTGTTATTATTAACACAGATAAATg < 1:1044298/70‑1 (MQ=255) aaaaCCATATTAAAAGACTTTCTCTTCCAGAACTTCTCTAACCTGTGTTATTATTAACACAGATAAATGTa < 1:807150/71‑1 (MQ=255) aaaCCATATTAAAAGACTTTCTCTTCCAGAACTTCTCTAACCTGTGTTATTATTAACACAGATAAATGTaa < 1:3104638/71‑1 (MQ=255) aaaCCATATTAAAAGACTTTCTCTTCCAGAACTTCTCTAACCTGTGTTATTATTAACACAGATAAATGTaa < 1:1768872/71‑1 (MQ=255) ccATATTAAAAGACTTTCTCTTCCAGAACTTCTCTAACCTGTGTTATTATTAACACAGATAAATGTAAGCa < 1:877496/71‑1 (MQ=255) ccATATTAAAAGACTTTCTCTTCCAGAACTTCTCTAACCTGTGTTATTATTAACACAGATAAATGTAAGCa < 1:201624/71‑1 (MQ=255) cATATTAAAAGACTTTCTCTTCCAGAACTTCTCTAACCTGTGTTATTATTAACACAGAt < 1:1640929/59‑1 (MQ=255) tatTAAAAGACTTTCTCTTCCAGAACTTCTCTAACCTGTGTTATTATTAACACAGATAAATGTAAGCAAgg < 1:3465889/71‑1 (MQ=255) atTAAAAGATTTTCTCTTCCAGAACTTCTCTAACCTGTGTTATTATTAACACAGATAAATg > 1:1482031/1‑61 (MQ=255) atTAAAAGACTTTCTCTTCCAGAACTTCTCTAACCTGTGTTATTATTAACACAGATAAATGTAAGCAAgg > 1:1117647/1‑70 (MQ=255) ttAAAAGACTTTCTCTTCCAGAACTTCTCTAACCTGTGTTATTATTAACACAGATAAATGTAAGCAAGGa < 1:3370330/70‑1 (MQ=255) tAAAAGACTTTCTCTTCCAGAACTTCTCTAACCTGTGTTATTATTAACACAGATAAATGTAAGCAAGGaaa > 1:1551535/1‑71 (MQ=255) aCTTTCTCTTCCAGAACTTCTCTAACCTGTGTTATTATTAACACAGATAAATGTAAGCAAGGAAACTATTa < 1:2843360/71‑1 (MQ=255) tctcTTCCAGAACTTCTCTAACCTGTGTTATTATTAACACAGATAAATGTAAGCAAGGAAACTATTACa > 1:3294860/1‑69 (MQ=255) ttCCAGAACTTCTCTAACCTGTGTTATTATTAACACAGAt < 1:1643102/40‑1 (MQ=255) ttCCAGAACTTCTCTAACCTGTGTTATTATTAACACAGATAAATGTAAGCAAGGAAACTATTACAAAGt < 1:1618637/69‑1 (MQ=255) ttCCAGAACTTCTCTAACCTGTGTTATTATTAACACAGATAAATGTAAGCAAGGAAACTATTACAAAGt < 1:1413788/69‑1 (MQ=255) ccAGAACTTCTCTAACCTGTGTTATTATTAACACAGATAAATGTAAg > 1:540943/1‑47 (MQ=255) aGAACTTCTCTAACCTGTGTTATTATTAACACAGATAAATGTAAGCAAGGAAACTATTACAAAGTAAatat < 1:429296/71‑1 (MQ=255) aGAACTTCTCTAACCTGTGTTATTATTAACACAGATAAATGTAAGCAAGGAAACTATTACAAAGTAAatat < 1:280158/71‑1 (MQ=255) aCTTCTCTAACCTGTGTTATTATTAACACAGATAAATGTAAGCAAGGAAACTATTACAAAGTAAATATTGc < 1:3688374/71‑1 (MQ=255) tctAACCTGTGTTATTATTAACACAGATAAATGTAAGCAAGGAAACTATTACAAAGTAAATATTGc < 1:1184487/66‑1 (MQ=255) tAACCTGTGTTATTATTAACACAGATAAATGTAAGCAAGGAAACTATTACAAAGTAAATATTGCGt > 1:2797279/1‑66 (MQ=255) tAACCTGTGTTATTATTAACACAGATAAATGTAAGCAAGGAAACTATTACAAAGTAAATATTGCGTCACt > 1:662451/1‑70 (MQ=255) tAACCTGTGTTATTATTAACACAGATAAATGTAAGCAAGGAAACTATTACAAAGTAAATATTGCGTCACt > 1:3545435/1‑70 (MQ=255) aaCCTGTGTTATTATTAACACAGATAAATGTAAGCAAGGAAACTATTACAAAGTAAATATTGCGTCACTa > 1:1093924/1‑70 (MQ=255) aCCTGTGTTATTATTAACACAGATAAATGTAAGCAAGGAAACTATTACAAAGTAAATATTGCGTCACTaaa > 1:829079/1‑71 (MQ=255) aCCTGTGTTATTATTAACACAGATAAATGTAAGCAAGGAAACTATTACAAAGTAAATATTGCGTCACTaa < 1:2529947/70‑1 (MQ=255) aCCTGTGTTATTATTAACACAGATAAATGTAAGCAAGGAAACTATTACAAAGTAAATATTGCGTCACTaa < 1:2417443/70‑1 (MQ=255) gtgtTAATAATAACACAGGTAAATGTAAGCAAGGa < 1:749202/35‑1 (MQ=17) gtgtTAATAATAACACAGGTAAATGTAAGCAAGGAAACTATTACAAAGTaaa < 1:2270071/52‑1 (MQ=37) tgtTAATAATAACACAGGTAAATGTAAGCAAGGAAACTATTACAAAGTaaa < 1:2635767/51‑1 (MQ=37) gtTAATAATAACACAGGTAAATGTAAGCAAGGaaa > 1:661771/1‑35 (MQ=18) gtTAATAATAACACAGGTAAATGTAAGCAAGGaaa > 1:1419580/1‑35 (MQ=18) gtTAATAATAACACAGGTAAATGTAAGCAAGGaaa > 1:3644511/1‑35 (MQ=18) ttattattaACACAGATAAATGTAAGCAAGGAAACTATTACAAAGTAAATATTGCGTCACTAAATGGACAt < 1:2041158/71‑1 (MQ=255) ttattattaACACAGATAAATGTAAGCAAGGAAACTATTACAAAGTAAATATTGCGTCACTAAATGGACAt < 1:1392834/71‑1 (MQ=255) ttattattaACACAGATAAATGTAAGCAAGGAAACTATTACAAAGTAAATATTGCGTCACTAAATGGACAt > 1:3708411/1‑71 (MQ=255) attaACACAGATAAATGTAAGCAAGGAAACTATTACAAAGTAAATATTGCGTCACTAAATGGACATTGGa < 1:2304077/70‑1 (MQ=255) taACACAGATAAATGTAAGCAAGGAAACTATTAGAAAGTAAATATTGCGTCACTAAATGGACATTGGAGt > 1:376208/1‑70 (MQ=255) aaCACAGATAAATGTAAGCAAGGAAACTATTACAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGa > 1:2756441/1‑71 (MQ=255) cacaGATAAATGTAAGCAAGGAAACTATTACAAAgg < 1:3010876/36‑2 (MQ=255) cacaGATAAATGTAAGCAAGGAAACTATTACAAAgg < 1:2965590/36‑2 (MQ=255) cacaGATAAATGTAAGCAAGGAAACTATTACAAAgg < 1:754802/36‑2 (MQ=255) cacaGATAAATGTAAGCAAGGAAACTATTACAAAgg < 1:2849037/36‑2 (MQ=255) acaGATAAATGTAAGCAAGGAAACTATTACAAAGTAAata > 1:1471127/1‑40 (MQ=255) acaGATAAATGTAAGCAAGGAAACTATTACAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGata > 1:1790404/1‑70 (MQ=255) caGATAAATGTAAGCAAGGAAACTATTACAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGatat < 1:485252/70‑1 (MQ=255) caGATAAATGTAAGCAAGGAAACTATTACAAAGGaa > 1:2275299/1‑36 (MQ=255) aGATAAATGTAAGCAAGGAAACTATTACAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGat < 1:1821557/67‑1 (MQ=255) aGATAAATGTAAGCAAGGAAACTATTACAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGat < 1:1344695/67‑1 (MQ=255) | AAATAAAAAACCATATTAAAAGACTTTCTCTTCCAGAACTTCTCTAACCTGTGTTATTATTAACACAGATAAATGTAAGCAAGGAAACTATTACAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGATAT > Exported/2042786‑2042920 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |