| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 2,093,175 | G→A | 13.7% | intergenic (‑26/+312) | yhaO ← / ← tdcG | predicted transporter/L‑serine dehydratase 3 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 2,093,175 | 0 | G | A | 13.7% | 194.5 / 19.3 | 73 | intergenic (‑26/+312) | yhaO/tdcG | predicted transporter/L‑serine dehydratase 3 |
| Reads supporting (aligned to +/- strand): ref base G (26/37); new base A (2/8); total (28/45) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.99e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.62e-01 | |||||||||||
AGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCAGCACGACCCGCCGGGGTCGAAGCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAGGGCTTA > Exported/2093105‑2093242 | aGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCAGCACGACCCGCCGGGGTCGAAg > 1:386867/1‑71 (MQ=255) cTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCAGCACGACCCGCCGGGGTCGAAACGTc < 1:2445469/71‑1 (MQ=255) tGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCAGCACGACCCGCCGGGGTCGAAGc < 1:81298/67‑1 (MQ=255) tGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCAGCACGACCCGCCGGGGTCGAAACGTc < 1:2180265/70‑1 (MQ=255) cGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCAGCACGACCCGCCGGGGTCGAAGCGTCTGc > 1:1304547/1‑70 (MQ=255) cGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCAGCACGACCCGCCGGGGTCGAAGCGTCTGc > 1:3705783/1‑70 (MQ=255) gAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCAGCACGACCCGCCGGGGTCGAAGCGTCTGCaa > 1:2127283/1‑71 (MQ=255) aaTTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCAGCACGACCCGCCGGGGTCGAAGCGTCTGCAAt < 1:3299805/71‑1 (MQ=255) aaTTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCAGCACGACCCGCCGGGGTCGAAGCGTCTGCAAt < 1:256067/71‑1 (MQ=255) aTTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCAGCACGACCCGCCGGGGTCGAAGCGTCTGCAAt > 1:729545/1‑70 (MQ=255) aTTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCAGCACGACCCGCCGGGGTCGAAGCGTCTGCAAt > 1:3726430/1‑70 (MQ=255) aTTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCAGCACGACCCGCCGGGGTCGAAGCGTCTGCAATg < 1:2616366/71‑1 (MQ=255) tGATCGCTTCTCGCCACTCGCTCTCACTCATTCCAGCACGACCCGCCGGGGTCGAAGCGTCTGCAATGAc < 1:2581699/70‑1 (MQ=255) gATCGCTTCTCGCCACTCGCTCTCACTCATTCCAGCACGACCCGCCGGGGTCGAAGCGTCTGCAATGACGc > 1:3615752/1‑71 (MQ=255) aTCGCTTCTCGCCACTCGCTCTCACTCATTCCAGCACGACCCGCCGGGGTCGAAGCGTCTGCAATGa < 1:2525498/67‑1 (MQ=255) aTCGCTTCTCGCCACTCGCTCTCACTCATTCCAGCACGACCCGCCGGGGTCGAAGCGTCTGCAATGACGc < 1:2113167/70‑1 (MQ=255) cGCTTCTCGCCACTCGCTCTCACTCATTCCAGCACGACCCGCCGGGGTCGAAGCGTCTGCAATGACGCCtt > 1:1260451/1‑71 (MQ=255) cTTCTCGCCACTCGCTCTCTCTCATTCCAGCACGACCCGCCGGGGTCGAAGCGTCTGCAATGACGCCTTTa < 1:2102721/71‑1 (MQ=255) cTTCTCGCCACTCGCTCTCACTCATTCCAGCACGACCCGCCGGGGTCGAAGCGTCTGCAATGACGCCTTTa < 1:3222077/71‑1 (MQ=255) tctcGCCACTCGCTCTCACTCATTCCAGCACGACCCGCCGGGGTCGAAACGTCTGCAATGACGCCTTTAt > 1:1747198/1‑70 (MQ=255) ctcGCCACTCGCTCTCACTCATTCCAGCACGACCCGCCGGGGTCGAAGCGTCTGCAATg < 1:3699237/59‑1 (MQ=255) ctcGCCACTCGCTCTCACTCATTCCAGCACGACCCGCCGGGGTCGAAGCGTCTGCAATg < 1:1350684/59‑1 (MQ=255) ctcGCCACTCGCTCTCACTCATTCCAGCACGACCCGCCGGGGTCGAAGCGTCTGCAATGACGCCTTTAt < 1:1514658/69‑1 (MQ=255) ctcGCCACTCGCTCTCACTCATTCCAGCACGACCCGCCGGGGTCGAAGCGTCTGCAATGACGCCTTTAt < 1:3672922/69‑1 (MQ=255) ctcGCCACTCGCTCTCACTCATTCCAGCACGACCCGCCGGGGTCGAAGCGTCTGCAATGACGCCTTTATTc > 1:2374289/1‑71 (MQ=255) ctcGCCACTCGCTCTCACTCATTCCAGCACGACCCGCCGGGGTCGAAGCGTCTGCAATGACGCCTTTATTc > 1:2235257/1‑71 (MQ=255) tcGCCACTCGCTCTCACTCATTCCAGCACGACCCGCCGGGGTCGAAGCGTCTGc < 1:3391437/54‑1 (MQ=255) cGCCACTCGCTCTCACTCATTCCAGCACGACCCGCCGGGGTCGAAGCGTCTGCAATGACGCCTTTATTCGa > 1:282377/1‑71 (MQ=255) gCCACTCGCTCTCACTCATTCCAGCACGACCCGCCGGGGTCGAAGCGTCTGCAATGACGCCTTTATTCGa < 1:1964758/70‑1 (MQ=255) ccACTCGCTCTCACTCATTCCAGCACGACCCGCCGGGGTCGAAGCGTCTGCAATGACGc < 1:1996946/59‑1 (MQ=255) cACTCGCTCTCACTCATTCCAGCACGACCCGCCGGGGTCGAAGCGTCTGCAATGACGCCTTTATTCGATg > 1:2649456/1‑70 (MQ=255) cACTCGCTCTCACTCATTCCAGCACGACCCGCCGGGGTCGAAGCGTCTGCAATGACGCCTTTATTCGATg > 1:2288544/1‑70 (MQ=255) aCTCGCTCTCACTCATTCCAGCACGACCCGCCGGGGTCGAAGCGTCTGCAATGACGc < 1:3028616/57‑1 (MQ=255) aCTCGCTCTCACTCATTCCAGCACGACCCGCCGGGGTCGAAGCGTCTGCAATGACGCCTTTATTCGATGCa < 1:3216857/71‑1 (MQ=255) aCTCGCTCTCACTCATTCCAGCACGACCCGCCGGGGTCGAAGCGTCTGCAATGACGCCTTTATTCGATGCa < 1:1156684/71‑1 (MQ=255) aCTCGCTCTCACTCATTCCAGCACGACCCGCCGGGGTCGAAGCGTCTGCAATGACGCCTTTATTCGATGCa < 1:160513/71‑1 (MQ=255) cTCGCTCTCACTCATTCCAGCACGACCCGCCGGGGTCGAAGCGTCTGCAAt < 1:1949036/51‑1 (MQ=255) cTCGCTCTCACTCATTCCAGCACGACCCGCCGGGGTCGAAGCGTCTGCAATGACGCCTTTATTCGATGCaa > 1:2877376/1‑71 (MQ=255) cTCGCTCTCACTCATTCCAGCACGACCCGCCGGGGTCGAAACg < 1:2367756/43‑1 (MQ=255) cTCGCTCTCACTCATTCCAGCACGACCCGCCGGGGTCGAAACGTCTGCaa < 1:222925/50‑1 (MQ=255) tCGCTCTCACTCATTCCAGCACGACCCGCCGGGGTCGAAGCGTCTGCAATGACGCCTTTATTCGATGCAAt > 1:3205391/1‑71 (MQ=255) cGCTCTCACTCATTCCAGCACGACCCGCCGGGGTCGAAACGTc > 1:134839/1‑43 (MQ=255) gCTCTCACTCATTCCAGCACGACCCGCCGGGGTCGAAGCGTCTGCaa > 1:2857068/1‑47 (MQ=255) gCTCTCACTCATTCCAGCACGACCCGCCGGGGTCGAAGCGTCTGCaa > 1:3398543/1‑47 (MQ=255) gCTCTCACTCATTCCAGCACGACCCGCCGGGGTCGAAGCGTCTGCaa > 1:2485419/1‑47 (MQ=255) cactcaTTCCAGCACGACCCGCCGGGGTCGAAGCGTCTGCAATGACGCCTTTATTCGa < 1:2592472/58‑1 (MQ=255) ctcaTTCCAGCACGACCCGCCGGGGTCGAAGCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAAt > 1:2812461/1‑71 (MQ=255) aTTCCAGCACGACCCGCCGGGGTCGAAGCGTCTGCaaa > 1:2722567/1‑37 (MQ=255) aTTCCAGCACGACCCGCCGGGGTCGAAACGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTtc < 1:2582701/71‑1 (MQ=255) cAGCACGACCCGCCGGGGTCGAAGCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTtct < 1:669484/68‑1 (MQ=255) cAGCACGACCCGCCGGGGTCGAAGCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGc < 1:1070468/71‑1 (MQ=255) aGCACGACCCGCCGGGGTCGAAGCGTCTGCAATGACGCCTTTATTCGATGCAAtt < 1:269460/55‑1 (MQ=255) aGCACGACCCGCCGGGGTCGAAGCGTCTGCAATGACGCCTTTATTCGATGCAAtt < 1:1333309/55‑1 (MQ=255) gCACGACCCGCCGGGGTCGAAGCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCg > 1:807163/1‑68 (MQ=255) gCACGACCCGCCGGGGTCGAAGCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCg > 1:1754323/1‑68 (MQ=255) aCGACCCGCCGGGGTCGAAGCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTtct > 1:3407810/1‑64 (MQ=255) aCGACCCGCCGGGGTCGAAGCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATATCTCGATCa > 1:2586496/1‑70 (MQ=255) aCGACCCGCCGGGGTCGAAACGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCaa < 1:502598/71‑1 (MQ=255) aCGACCCGCCGGGGTCGAAACGTCTGCAATGACGACTTTATTCGATGCAATTTCCATAATTTCTCGCTCaa < 1:2346369/71‑1 (MQ=255) aCCCGCCGGGGTCGAAGCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAatat < 1:2910050/71‑1 (MQ=255) aCCCGCCGGGGTCGAAGCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAatat < 1:811763/71‑1 (MQ=255) ccgccgGGGTCGAAGCGTCTGCAATGACTCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATAttt < 1:1414405/71‑1 (MQ=255) cgccgGGGTCGAAGCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCaa > 1:1855355/1‑65 (MQ=255) gccgGGGTCGAAGCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTg < 1:3484255/71‑1 (MQ=255) gccgGGGTCGAAGCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTg < 1:2859288/71‑1 (MQ=255) gccgGGGTCGAAACGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTg < 1:2517251/71‑1 (MQ=255) cgGGGTCGAAGCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTa < 1:2363534/71‑1 (MQ=255) gggTCGAAGCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAgg < 1:1087099/71‑1 (MQ=255) gTCGAAGCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGt < 1:3199466/66‑1 (MQ=255) tCGAAGCGTCTGCAATGACGCCTTTATTCGATGCa < 1:1338064/35‑1 (MQ=255) tCGAAGCGTCTGCAATGACGCCTTTATTCGATGCAAtt < 1:517223/38‑1 (MQ=255) cGAAGCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTtctc > 1:3489813/1‑50 (MQ=255) gAAGCGTCTGCAATGACGCCTTTATTCGAAGCAATTTCCATAATTTCTCGCTCAATATTTTGTAGGGCtta > 1:2234710/1‑71 (MQ=255) aGCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTtct < 1:892150/46‑1 (MQ=255) | AGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCAGCACGACCCGCCGGGGTCGAAGCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAGGGCTTA > Exported/2093105‑2093242 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |