| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 226,894 | T→A | 7.3% | A330A (GCT→GCA) | frsA → | hydrolase, binds to enzyme IIA(Glc) |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 226,894 | 0 | T | A | 7.3% | 195.8 / 6.5 | 68 | A330A (GCT→GCA) | frsA | hydrolase, binds to enzyme IIA(Glc) |
| Reads supporting (aligned to +/- strand): ref base T (33/30); new base A (2/3); total (35/33) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.68e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.28e-01 | |||||||||||
TGCCAGCAACAGGTGCCGGAAATGTATCTTGACGTTCTGGCCAGTCGTTTGGGGATGCATGATGCTTCCGATGAAGCGTTGCGCGTGGAGCTGAATCGCTATTCATTAAAAGTGCAAGGATTGCTGGGACGTCGCT > Exported/226829‑226964 | tGCCAGCAACAGGTGCCGGAAATGTATCTTGACGTTCTGGCCAGTCGTTTGGGGATGCATGATGCTTCCGa < 1:2590749/71‑1 (MQ=255)tGCCAGCAACAGGTGCCGGAAATGTATCTTGACGTTCTGGCCAGTCGTTTGGGGATGCATGATGCTTCCGa > 1:3584917/1‑71 (MQ=255) gCCAGCAACAGGTGCCGGAAATGTATCTTGACGTTCTGGCCAGTCGTTTGGGGATGCATGATGCTTCCGAt > 1:995053/1‑71 (MQ=255) aGCAACAGGTGCCGGAAATGTATCTTGACGTTCTGGCCAGTCGTTTGGGGATGCATGATGCTTCCGATGaa < 1:1438712/71‑1 (MQ=255) gCAACAGGTGCCGGAAATGTATCTTGACGTTCTGGCCAGTCGTTTGGGGATGCATGATGCTTCCGATGAAg > 1:2315251/1‑71 (MQ=255) gCAACACGTGCCGGAAATGTATCTTGACGTTCTGGCCAGTCGTTTGGGGATGCATGATGCTTCCGATGAAg > 1:3582979/1‑71 (MQ=255) aaCAGGTGCCGGAAATGTATCTTGACGTTCTGGCCAGTCGTTTGGGGATGCATGATGCTTCCGATGAAGCg > 1:2155474/1‑71 (MQ=255) aCAGGTGCCGGAAATGTATCTTGACGTTCTGGCCAGTCGTTTGGGGATGCATGATGCTTCCGATg > 1:3080399/1‑65 (MQ=255) aCAGGTGCCGGAAATGTATCTTGACGTTCTGGCCAGTCGTTTGGGGATGCATGATGCTTCCGATGa > 1:3642173/1‑66 (MQ=255) aCAGGTGCCGGAAATGTATCTTGACGTTCTGGCCAGTCGTTTGGGGATGCATGATGCTTCCGATGa > 1:3386003/1‑66 (MQ=255) aCAGGTGCCGGAAATGTATCTTGACGTTCTGGCCAGTCGTTTGGGGATGCATGATGCTTCCGATGAAGCGt > 1:3575954/1‑71 (MQ=255) aCAGGTGCCGGAAATGTATCTTGACGTTCTGGCCAGTCGTTTGGGGATGCATGATGCTTCCGATGAAGCGt > 1:1931874/1‑71 (MQ=255) aCAGGTGCCGGAAATGTATCTTGACGTTCTGGCCAGTCGTTTGGGGATGCATGATGCTTCCGATGAAGCGt > 1:2315821/1‑71 (MQ=255) aGGTGCCGGAAATGTATCTTGACGTTCTGGCCAGTCGTTTGGGGAAGCATCATGCATcc < 1:1588636/59‑1 (MQ=38) aGGTGCCGGAAATGTATCTTGACGTTCTGGCCAGTCGTTTGGGGAAGCATCATGCATcc < 1:439593/59‑1 (MQ=38) aGGTGCCGGAAATGTATCTTGACGTTCTGGCCAGTCGTTTGGGGAAGCATCATGCATcc < 1:566931/59‑1 (MQ=38) tGCCGGAAATGTATCTTGACGTTCTGGCCAGTCGTTTGGGGATGCATGATGCTTCCGATGAAGCGTTgcgc < 1:1669603/71‑1 (MQ=255) ccGGAAATGTATCTTGACGTTCTGGCCAGTCGTTTGGGGATGCATGATGCTTCCGATGAAGCGTTGCGCGt < 1:2830726/71‑1 (MQ=255) cGGAAATGTATCTTGACGTTCTGGCCAGTCGTTTGGGGATGCATGATGCTTCCGATGAAGCGTTGCGCGTg < 1:26798/71‑1 (MQ=255) ggAAATGTATCTTGACGTTCTGGCCAGTCGTTTGGGGATGCATGATGCTTCCGATGAAGCg < 1:3401596/61‑1 (MQ=255) ggAAATGTATCTTGACGTTCTGGCCAGTCGTTTGGGGATGCATGATGCTTCCGATGAAGCg < 1:2792925/61‑1 (MQ=255) ggAAATGTATCTTGACGTTCTGGCCAGTCGTTTGGGGATGCATGATGCTTCCGATGAAGCg < 1:1379236/61‑1 (MQ=255) tGTATCTTGACGTTCTGGCCAGTCGTTTGGGGATGCATGATGCTTCCGATGAAGCGTTGCGCGTGGAGCTg < 1:3258260/71‑1 (MQ=255) tATCTTGACGTTCTGGCCAGTCGTTTGGGGATGCATGATGCTTCCGATGAAGCGTTGCGCGt < 1:805079/62‑1 (MQ=255) tATCTTGACGTTCTGGCCAGTCGTTTGGGGATGCATGATGCTTCCGATGAAGCGTTGCGCGTGGAGCTGaa < 1:2627397/71‑1 (MQ=255) aTCTTGACGTTCTGGCCAGTCGTTTGGGGATGCATGATGCTTCCGATGAAGCGTTGCGCGt < 1:1546280/61‑1 (MQ=255) tCTTGACGTTCTGGCCAGTCGTTTGGGGATGCATGATGCTTCCGATGAAGCGTTGCGCGTgg > 1:1456278/1‑62 (MQ=255) tCTTGACGTTCTGGCCAGTCGTTTGGGGATGCATGATGCTTCCGATGAAGCGTTGCGCGTgg > 1:1829862/1‑62 (MQ=255) cGTTCTGGCCAGTCGTTTGGGGATGCATGATGATTCCGATGAAGCGt < 1:2527099/47‑1 (MQ=255) gTTCTGGCCAGTCGTTTGGGGATGCATGATGCTTCCGATGAAGCGTTGCGCGTGGAGCTGAATCGCTATTc < 1:2502745/71‑1 (MQ=255) gTTCTGGCCAGTCGTTTGGGGATGCATGATGCTTCCGATGAAGCGTTGCGCGTGGAGCTGAATCGCTATTc < 1:1050072/71‑1 (MQ=255) ttCTGGCCAGTCGTTTGGGGATGCATGATGCTTCCGATGAAGCg < 1:3092831/44‑1 (MQ=255) ttCTGGCCAGTCGTTTGGGGATGCATGATGCTTCCGATGAAGCg < 1:2814034/44‑1 (MQ=255) cTGGCCAGTCGTTTGGGGATGCATGATGCTTCCGATGAAGCGTTGCGCGTGGAGc > 1:911384/1‑55 (MQ=255) tccAGTCGTTTGGGGATGCATGATGCTTCCGATGAAGCGTTGCGCGTGGAGCTGAATCGCTATTCATTa < 1:2131884/68‑1 (MQ=255) gCCAGTCGTTTGGGGATGCATGATGCTTCCGATGAAGCGTTGCGCGTGGAGCTGAATCGCTATTCATTaa < 1:2335458/70‑1 (MQ=255) gCCAGTCGTTTGGGGATGCATGATGCTTCCGATGAAGCGTTGCGCGTGGAGCTGAATCGCTATTCATTaa > 1:349469/1‑70 (MQ=255) gCCAGTCGTTTGGGGATGCATGATGCTTCCGATGAAGCGTTGCGCGTGGAGCTGAATCGCTATTCATTaa < 1:2772505/70‑1 (MQ=255) gCCAGTCGTTTGGGGATGCATGATGCTTCCGATGAAGCGTTGCGCGTGGAGCTGAATCGCTATTCATTaa < 1:827774/70‑1 (MQ=255) aaGTCGTTTGGGGATGCATGATGCTTCCGATGAAGCGTTGCGCGTGGAGCTGAATAGCTATTCATTAAAAg > 1:2134162/2‑71 (MQ=255) gTCGTTTGGGGATGCATGATGCTTCCGATGAAGCGTTGCGCGTGGAGCTGAATCGCTATTCATTAAAAg > 1:1743050/1‑69 (MQ=255) gTCGTTTGGGGATGCATGATGCTTCCGATGAAGCGTTGCGCGTGGAGCTGAATCGCTATTCATTAAAAGTg > 1:427046/1‑71 (MQ=255) gTCGTTTGGGGATGCATGATGCTTCCGATGAAGCGTTGCGCGTGGAGCTGAATCGCTATTCATTAAAAGTg > 1:2212472/1‑71 (MQ=255) gTCGTTTGGGGATGCATGATGCTTCCGATGAAGCGTTGCGCGTGGAGCTGAATCGCTATTCATTAAAAGTg > 1:880445/1‑71 (MQ=255) gTCGTTTGGGGATGCATGATGCTTCCGATGAAGCGTTGCGCGTGGAGCTGAATCGCTATTCATTAAAAGTg > 1:2182875/1‑71 (MQ=255) gTCGTTTGGGGATGCATGATGCTTCCGATGAAGCGTTGCGCCTGGAg > 1:269663/1‑47 (MQ=255) tCGTTTGGGGATGCATGATGCTTCCGATGAAGCGTTGCGCGTGGAGCTGAATCGCTATTCATTAAAAGTg > 1:1706128/1‑70 (MQ=255) tCGTTTGGGGATGCATGATGCTTCCGATGAAGCGTTGCGCGTGGAGCTGAATCGCTATTCATTAAAAGTg > 1:794893/1‑70 (MQ=255) tCGTTTGGGGATGCATGATGCTTCCGATGAAGCGTTGCGCGTGGAGCTGAATCGCTATTCATTAAAAGTg > 1:513288/1‑70 (MQ=255) ttGGGGATGCATGATGCTTCCGATGAAGCGTTGCGCGTGGAGCTGAATCGCTATTCATTAAAAGTGCAAg > 1:597724/1‑70 (MQ=255) tGGGGATGCATGATGCTTCCGATGAAGCGTTGCGCGTGGAGCTGAATCGCTATTCATTAAAAg > 1:1657831/1‑63 (MQ=255) tGGGGATGCATGATGCTTCCGATGAAGCGTTGCGCGTGGAGCTGAATCGCTATTCATTAAAAg > 1:840908/1‑63 (MQ=255) tGGGGATGCATGATGCTTCCGATGAAGCGTTGCGCGTGGAGCTGAATCGCTATTCATTAAAAGTGCAAGGa > 1:1645794/1‑71 (MQ=255) ggAAGCATCATGCATCCGATGAAGCGTTGCGCGTGGAGCTGAATCGCTATTCATTAAAAGTGCAAGGATTg > 1:2191541/1‑71 (MQ=255) ggAAGCATCATGCATCCGATGAAGCGTTGCGCGTGGAGCTGAATCGCTATTCATTAAAAGTGCAAGGATTg > 1:973165/1‑71 (MQ=255) atgatgCTTCCGATGAAGCGTTGCGCGTGGAGCTGAATCGCTATTCATTa < 1:1938323/50‑1 (MQ=255) atgatgCTTCCGATGAAGCGTTGCGCGTGGAGCTGAATCGCTATTCATTa < 1:2088903/50‑1 (MQ=255) atgatgCTTCCGATGAAGCGTTGCGCGTGGAGCTGAATCGCTATTCATTa < 1:811573/50‑1 (MQ=255) atgatgCTTCCGATGAAGCGTTGCGCGTGGAGCTGAATCGCTATTCATTa < 1:3116896/50‑1 (MQ=255) atgatgCTTCCGATGAAGCGTTGCGCGTGGAGCTGAATCGCTATTCATTa < 1:329626/50‑1 (MQ=255) atgatgCTTCCGATGAAGCGTTGCGCGTGGAGCTGAATCGCTATTCATTAAAAGTGCAAGGATTGc < 1:981095/66‑1 (MQ=255) atgatgCTTCCGATGAAGCGTTGCGCGTGGAGCTGAATCGCTATTCATTAAAAGTGCAAGGATTGCTGGGa > 1:854481/1‑71 (MQ=255) tgatgCTTCCGATGAAGCGTTGCGCGTGGAGCTGAATCGCTATTCATTAAAAGTGCAAGGATTGCTGGGAc < 1:929066/71‑1 (MQ=255) gatgCTTCCGATGAAGCTTTGCGCGTGGAGCTGAATCGCTATTCATTAAAAGTGCAAGGAt > 1:2448326/1‑61 (MQ=255) gatgCTTCCGATGAAGCTTTGCGCGTGGAGCTGAATCGCTATTCATTAAAAGTGCAAGGAt > 1:2428499/1‑61 (MQ=255) atgCTTCCGATGAAGCGTTGCGCGTGGAGCTGAATCGCTATTCATTaaaa > 1:1420654/1‑50 (MQ=255) atgCTTCCGATGAAGCGTTGCGCGTGGAGCTGAATCGCTATTCATTAAAAGTGCAAGGATTGCTGGGACg < 1:88352/70‑1 (MQ=255) cTTCCGATGAAGCGTTGCGCGTGGAGCTGAATCGCTATTCATTAAAAGTGCAAGGATTGCTGGGACGTCGc < 1:482781/71‑1 (MQ=255) ttCCGATGAAGCGTTGCGCGTGGAGCTGAATCGCTATTCATTAAAAGTGCAAGGATTGCTg < 1:423760/61‑1 (MQ=255) ttCCGATGAAGCGTTGCGCGTGGAGCTGAATCGCTATTCATTAAAAGTGCAAGGATTGCTg < 1:1593839/61‑1 (MQ=255) ttCCGATGAAGCGTTGCGCGTGGAGCTGAATCGCTATTCATTAAAAGTGCAAGGATTGCTGGGACGTCGCt > 1:3681248/1‑71 (MQ=255) | TGCCAGCAACAGGTGCCGGAAATGTATCTTGACGTTCTGGCCAGTCGTTTGGGGATGCATGATGCTTCCGATGAAGCGTTGCGCGTGGAGCTGAATCGCTATTCATTAAAAGTGCAAGGATTGCTGGGACGTCGCT > Exported/226829‑226964 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |