| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 2,207,332 | A→G | 56.5% | intergenic (‑22/+408) | tldD ← / ← yhdP | predicted peptidase/conserved membrane protein, predicted transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 2,207,332 | 0 | A | G | 56.5% | 18.4 / 55.5 | 46 | intergenic (‑22/+408) | tldD/yhdP | predicted peptidase/conserved membrane protein, predicted transporter |
| Reads supporting (aligned to +/- strand): ref base A (9/11); new base G (16/10); total (25/21) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.72e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTT > Exported/2207266‑2207400 | gCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTGCTg > 1:1096109/1‑70 (MQ=255) tCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGt > 1:838396/1‑69 (MQ=255) tCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGt > 1:2900436/1‑69 (MQ=255) gccgcTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTGCTGCAGTagag < 1:603944/71‑1 (MQ=255) cgcTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGa > 1:992505/1‑71 (MQ=255) gcTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTGCTGCAGt > 1:62089/1‑64 (MQ=255) gcTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTGCTGCAGt > 1:2301444/1‑64 (MQ=255) gcTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTGCTGCAGt > 1:834448/1‑64 (MQ=255) gcTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTGCTGCAGt > 1:902262/1‑64 (MQ=255) gcTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTGCTGCAGTAGAGGAt > 1:1253506/1‑71 (MQ=255) gcTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGAt < 1:195245/71‑1 (MQ=255) cTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTGCTGCAGTAGAGGAtt > 1:2186280/1‑71 (MQ=255) cTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTGCTGCAGTAGAGGAtt > 1:3043940/1‑71 (MQ=255) tAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGAttt > 1:426133/1‑71 (MQ=255) gCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTGCTGCAGTAGAGGAttttt < 1:2617800/71‑1 (MQ=255) ttGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTGCTGCAGTAGAGGATTTTTTACg < 1:3731026/71‑1 (MQ=255) cACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTg < 1:670566/70‑1 (MQ=255) aCTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGc < 1:1920379/70‑1 (MQ=255) cTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTGCTGCAGTAGAGGATTTTTTACGGCtt < 1:1592816/68‑2 (MQ=255) ttACGAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTAc > 1:1887204/1‑62 (MQ=255) ttACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTGCTGCAGTAGAGGATTTTTTACGGCTGCCg > 1:2124096/1‑70 (MQ=255) ttACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTGCTGCAGTAGAGGATTTTTTACGGCTGCCg > 1:937814/1‑70 (MQ=255) ttACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTAc > 1:962381/1‑62 (MQ=255) aCCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTGCTGCAGTAGAGGAttttt < 1:3073051/57‑1 (MQ=255) aCCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTGCTGCAGTAGAGGATTTTTTa > 1:723495/1‑59 (MQ=255) aCCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTGCTGCAGTAGAGGATTTTTTACGGCTGCCGGAt > 1:1550190/1‑71 (MQ=255) cAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTGCTGCAGTa < 1:3117633/45‑1 (MQ=255) cAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTGCTGCAGTAGAGGATTTTTTACGGCTGCCGGATgc > 1:34873/1‑71 (MQ=255) ggTTAAGACTCATCGTTTTTGCTACTCGTTAGTTGCTGCAGTAGAGGATTTTTTACGGCTGCCGGATgcgg > 1:2851856/1‑71 (MQ=255) ggTTAAGACTCATCGTTTTTGCTACTCGTTAGTTGCTGCAGTAGAGGATTTTTTACGGCTGCCGGATgcgg > 1:3117732/1‑71 (MQ=255) ttAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACg < 1:2960477/55‑1 (MQ=255) tAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTa > 1:3717032/1‑52 (MQ=255) aaGACTCATCGTTTTTGCTACTCGTTAGTTGCTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGt < 1:268600/70‑1 (MQ=255) aGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTTCCGGATGCGGCGTg < 1:43152/70‑1 (MQ=255) aTCGTTTTTGCTACTCGTTAGTTGCTGCAGTAGAGGATTTTTTa < 1:750223/44‑1 (MQ=255) aTCGTTTTTGCTACTCGTTAGTTGCTGCAGTAGAGGATTTTTTACGGCTGCCgg < 1:1946792/54‑1 (MQ=255) aTCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGAtttttt > 1:3092418/1‑43 (MQ=255) cGTTTTTGCTACTCGTTAGTTGCTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTa > 1:190548/1‑71 (MQ=255) tttGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATcc < 1:3377140/70‑1 (MQ=255) tttGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATcc < 1:2599968/70‑1 (MQ=255) tttGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATcc < 1:3622513/70‑1 (MQ=255) ttGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAAc > 1:2906654/1‑60 (MQ=255) tGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAg < 1:3568591/70‑1 (MQ=255) cTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGcc < 1:591507/70‑1 (MQ=255) cTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGcc < 1:2240213/70‑1 (MQ=255) cTCGTTAGTTGCTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTAc < 1:900276/70‑1 (MQ=255) gttagttgCTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACgg < 1:1594912/69‑1 (MQ=255) gttagttgCTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACgg < 1:3456026/69‑1 (MQ=255) gttagttgCTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGtt < 1:807066/71‑1 (MQ=255) gttagttgCTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGt < 1:2293926/70‑1 (MQ=255) gttagttaCTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGt < 1:54160/70‑1 (MQ=255) ttagttaCTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGtt < 1:1952056/70‑1 (MQ=255) tagttgCTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGa > 1:1012940/1‑47 (MQ=255) tagttgCTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGa > 1:1539770/1‑47 (MQ=255) tagttgCTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGa > 1:649432/1‑47 (MQ=255) gttgCTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGt < 1:2165048/43‑1 (MQ=255) gttgCTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGt < 1:2632384/43‑1 (MQ=255) gttaCTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGt < 1:3339483/71‑1 (MQ=255) ttaCTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACTGTTATGtt < 1:2651809/71‑1 (MQ=255) aCTGCAGTAGAGGATTTTTTACGGCTGCCGGATgcg < 1:1373708/36‑1 (MQ=255) | GCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTT > Exported/2207266‑2207400 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |