| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 2,281,121 | A→G | 65.0% | F67S (TTT→TCT) | fabR ← | DNA‑binding transcriptional repressor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 2,281,121 | 0 | A | G | 65.0% | 61.5 / 56.7 | 60 | F67S (TTT→TCT) | fabR | DNA‑binding transcriptional repressor |
| Reads supporting (aligned to +/- strand): ref base A (15/6); new base G (18/21); total (33/27) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.02e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.24e-01 | |||||||||||
GTAGCATTAAACCGCTCTCATCAACCATGGTCAGACCCAGTTCGTCTACGTCGCGGAAATGCCGATAAAAAGAGGTGGGAGCAATGCCCGCTTCACGCGCCACTTCACGCAAACTCAGGCTGGCGAAGCTGCGTTC > Exported/2281053‑2281188 | gTAGCATTAAACCGCTCTCATCAACCATGGTCAGACCCAGTTCGTCTACGTCGCGGAAATGCCGATaaa > 1:786268/1‑69 (MQ=255)gTAGCATTAAACCGCTCTCATCAACCATGGTCAGACCCAGTTCGTCTACGTCGCGGAAATGCCGATaaa > 1:1544183/1‑69 (MQ=255) ttAAACCGCTCTCATCAACCATGGTCAGACCCAGTTCGTCTACGTCGCGGAAATGCCGATAAGAAGAGGTg > 1:3019771/1‑71 (MQ=255) ttAAACCGCTCTCATCAACCATGGTCAGACCCAGTTCGTCTACGTCGCGGAAATGCCGATAAAAAGAGGTg > 1:2151380/1‑71 (MQ=255) ttAAACCGCTCTCATCAACCATGGTCAGACCCAGTTCGTCTACGACGCGGAAATGCCGATAAAAAGAGGTg > 1:691783/1‑71 (MQ=255) aaaCCGCTCTCATCAACCATGGTCAGACCCAGTTCGTCTACGTCGCGGAAATGCCGATAAAAAGAGGTgg < 1:2101114/70‑1 (MQ=255) aaCCGCTCTCATCAACCATGGTCAGACCCAGTTCGTCTACGTCGCGGAAATGCCGATAAGAAGAGGTgg > 1:3472876/1‑69 (MQ=255) cGCTCTCATCAACCATGGTCAGACCCAGTTCGTCTACGTCGCGGAAATGCCGATAAGAAGAGGTGGGAGCa < 1:3077799/71‑1 (MQ=255) cGCTCTCATCAACCATGGTCAGACCCAGTTCGTCTACGTCGCGGAAATGCCGATAAGAAGAGGTGGGAGCa < 1:1446011/71‑1 (MQ=255) gCTCTCATCAACCATGGTCAGACCCAGTTCGTCTACGTCGCGGAAATGCCGATAAGAAGAGGTGGGAGCaa > 1:1632795/1‑71 (MQ=255) ctcATCAACCATGGTCAGACCCAGTTCGTCTACGTCGCGGAAATGCCGATAAGAagag < 1:2524834/58‑1 (MQ=255) ctcATCAACCATGGTCAGACCCAGTTCGTCTACGTCGCGGAAATGCCGATAAGAagag < 1:3660101/58‑1 (MQ=255) catcaACCATGGTCAGACCCAGTTCGTCTACGTCGCGGAAATGCCGATAAGAAGAGGTGGGAGCAATGcc > 1:2276804/1‑70 (MQ=255) atcaACCATGGTCAGACCCAGTTCGTCTACGTCGCGGAAATGCCGATAAGAAGAGGTGGGAGCAATGccc < 1:2165556/70‑1 (MQ=255) atcaACCATGGTCAGACCCAGTTCGTCTACGTCGCGGAAATGCCGATAAGAAGAGGTGGGAGCAATGccc < 1:3053664/70‑1 (MQ=255) atcaACCATGGTCAGACCCAGTTCGTCTACGTCGCGGAAATGCCGATAAGAAGAGGTGGGAGCAATGccc < 1:1756450/70‑1 (MQ=255) tcaACCATGGTCAGACCCAGTTCGTCTACGTCGCGGAAATGCCGATAAGAAGAGGTGGGAGCAATGCCCGc < 1:684074/71‑1 (MQ=255) caACCATGGTCAGACCCAGTTCGTCTACGTCGCGGAAATGCCGATAAGAAGAGGTGGGAGCAATGCCCGc > 1:3326513/1‑70 (MQ=255) caACCATGGTCAGACCCAGTTCGTCTACGTCGCGGAAATGCCGATAAGAAGAGGTGGGAGCAATGCCCGc > 1:163855/1‑70 (MQ=255) aaCCATTGTCAGACCCAGTTCGTCTACGTCGCGGAAATGCCGATAAGAAGAGGTGGGAGCAATGCCCGCt < 1:3609565/70‑1 (MQ=255) ccATGGTCAGACCCAGTTCGTCTACGTCGCGGAAATGCCGATAAAAAGAGGTGGGAGCAATGCCCGCTTCa > 1:323018/1‑71 (MQ=255) ccATGGTCAGACCCAGTTCGTCTACGTCGCGGAAATGCCGATAAAAAGAGGTGGGAGCAATGCCCGCTTCa > 1:3297112/1‑71 (MQ=255) tGGTCAGACCCAGTTCGTCTACGTCGCGGAAATGCCGATAAAAAGAGGTGGGAGCAATGCCCGCTTCAcgc > 1:1346096/1‑71 (MQ=255) ggTCAGACCCAGTTCGTCTACGTCGCGGAAATGCCGATAAGAAGAGGTGGGAGCAATGCCCGCTTCAcgc > 1:250372/1‑70 (MQ=255) gACCCAGTTCGTCTACGTCGCGGAAATGCCGATAAGAAGAGGTGGGAGCAATGCCCGCTTCACGCGCCACt < 1:342691/71‑1 (MQ=255) aGTTCGTCTACGTCGCGGAAATGCCGATAAGAAGAGGTGGGAGCAATGCCCGCTTCACGCGCCACTTCACg > 1:2926846/1‑71 (MQ=255) aGTTCGTCTACGTCGCGGAAATGCCGATAAGAAGAGGTGGGAGCAATGCCCGCTTCACGCGCCACTTCACg > 1:500036/1‑71 (MQ=255) aGTTCGTCTACGTCGCGGAAATGCCGATAAGAAGAGGTGGGAGCAATGCCCGCTACACGCGCCa > 1:517795/1‑64 (MQ=255) gTTCGTCTACGTCGCGGAAATGCCGATAAGAAGAGGTGGGAGCAATGCCCGCTTCACGCGCCACTTCAc > 1:2654348/1‑69 (MQ=255) ttCGTCTACGTCGCGGAAATGCCGATAAGAAGAGGTGGGAGCAATGCCCGCtt < 1:295652/53‑1 (MQ=255) ttCGTCTACGTCGCGGAAATGCCGATAAGAAGAGGTGGGAGCAATGCCCGCtt < 1:294364/53‑1 (MQ=255) ttCGTCTACGTCGCGGAAATGCCGATAAGAAGAGGTGGGAGCAATGCCCGCTTCACGCGCCACTTCACgaa < 1:3685997/71‑3 (MQ=255) ttCGTCTACGTCGCGGAAATGCCGATAAGAAGAGGTGGGAGCAATGCCCGCTTCACGCGCCACTTCACGCa < 1:3542491/71‑1 (MQ=255) cGTCTACGTCGCGGAAATGCCGATAAGAAGAGGTGGGAGCAATGCCCGCTTCACGCGCCACTTCACGCaaa > 1:1800929/1‑71 (MQ=255) cGTCTACGTCGCGGAAATGCCGATAAAAAGAGGTGGGAGCAATGcc > 1:3086214/1‑46 (MQ=255) gTCTACGTCGCGGAAATGCCGATAAAAAGAGGTGGGAGCAATGCCCGCTTCACGCGCCACTTCACGCAAAc > 1:1596837/1‑71 (MQ=255) tCGCGGAAATGCCGATAAAAAGAGGTGGGAGCAATGCCCGCTTCACGCGCCACtt > 1:229504/1‑55 (MQ=255) tCGCGGAAATGCCGATAAAAAGAGGTGGGAGCAATGCCCGCTTCACGCGCCACtt > 1:2064397/1‑55 (MQ=255) tCGCGGAAATGCCGATAAAAAGAGGTGGGAGCAATGCCCGCTTCACGCGCCACTTCACGCAAACTCAGGCt < 1:3183927/71‑1 (MQ=255) gcgGAAATGCCGATAAGAAGAGGTGGGAGCAATGCCCGCTTCACGCGCCACTTCACGCAAACTCAGGCTgg > 1:2725390/1‑71 (MQ=255) gcgGAAATGCCGATAAGAAGAGGTGGGAGCAATGCCCGCTTCACGCGCCACTTCACGCAAACTCAGGCTgg > 1:2118947/1‑71 (MQ=255) gcgGAAATGCCGATAAGAAGAGGTGGGAGCAATGCCCGCTTCACGCGCCACTTCACGCAAACTCAGGCTgg > 1:3680617/1‑71 (MQ=255) cgGAAATGCCGATAAGCAGAGGTGGGAGCAATGCGCGCTTCACGCGCCACTTCACGc < 1:85927/57‑1 (MQ=255) cgGAAATGCCGATAAAAAGAGGTGGGAGCAATGCCCGCTTCACGCGCCACTTCACGCAAACTCAGGCTGGc > 1:256027/1‑71 (MQ=255) cgGAAATGCCGATAAAAAGAGGTGGGAGCAATGCCCGCTTCACGCGCCACTTCACGCAAACTCAGGCTGGc > 1:134161/1‑71 (MQ=255) gAAATGCCGTTAAGAAGAGGTGGGAGCAATGCCCGCTTCACGCGCCACTTCACGCAAACTCAGGCTGGCGa < 1:1991182/71‑1 (MQ=255) gAAATGCCGATAAGAAGAGGGGGGAGCAATGCCCGCTTCACGCGCCACTTCACGCAAACTCAGGCTGGCGa < 1:2985292/71‑1 (MQ=255) gAAATGCCGATAAAAAGAGGTGGGAGCAATGCCCGCTTCACGCGCCACTTCACGCAAACTCAGGCTGGCGa < 1:2750602/71‑1 (MQ=255) aaaTGCCGATAAGAAGAGGTGGGAGCAATGCCCGCTTCACGCGCCACTTCa < 1:386797/51‑1 (MQ=255) aaaTGCCGATAAGAAGAGGTGGGAGCAATGCCCGCTTCACGCGCCACTTCa < 1:3585683/51‑1 (MQ=255) aaaTGCCGATAAGAAGAGGTGGGAGCAATGCCCGCTTCACGCGCCACTTCa < 1:1964895/51‑1 (MQ=255) aaaTGCCGATAAGAAGAGGTGGGAGCAATGCCCGCTTCACGCGCCACTTCACg > 1:2954321/1‑53 (MQ=255) aaaTGCCGATAAGAAGAGGTGGGAGCAATGCCCGCTTCACGCGCCACTTCACGCAAACTCAGGCTGGCg > 1:1756543/1‑69 (MQ=255) aaaTGCCGATAAGAAGAGGTGGGAGCAATGCCCGCTTCACGCGCCACTTCACGCAAACTCAGGCTGGCg > 1:1374718/1‑69 (MQ=255) aaaTGCCGATAAAAAGAGGTGGGAGCAATGCCCGCTTCACGCGCCACTTCACGCAAACTCAGGCTGGCg > 1:1256906/1‑69 (MQ=255) aaaTGCCGATAAAAAGAGGTGGGAGCAATGCCCGCTTCACGCGCCACTTCACGCAAACTCAGGCTGGCGaa < 1:1223506/71‑1 (MQ=255) aaaTGCCGATAAAAAGAGGTGGGAGCAATGCCCGCTTCACGCGCCACTTCACGCAAACTCAGGCTGGCGa < 1:2405591/70‑1 (MQ=255) aTAAGAAGAGGTGGGAGCAATGCCCGCTTCACGCGCCACTTCACGCAAACTCAGGCTGGCGa < 1:2167098/62‑1 (MQ=255) tAAAAAGAGGTGGGAGCAATGCCCGCTTCACGCGCCACTTCACGCAAACTCAGGCTGGCGAAGCTGCGtt > 1:1672120/1‑70 (MQ=255) tAAAAAGAGGTGGGAGCAATGCCCGCTTCACGCGCCACTTCACGCAAACTCAGGCTGGCGAAGCTGCGtt > 1:633836/1‑70 (MQ=255) tAAAAAGAGGTGGGAGCAATGCCCGCTTCACACGCCACTTCACGCAAACTCAGGCTGGCGAAGCTGCGTTc < 1:1578987/71‑1 (MQ=255) tAAAAAGAGGTGGGAGCAATGCCAGCTTCACGCGCCACTTCACGCAAACTCAGGCTGGCGAAGCTGCGtt > 1:2508109/1‑70 (MQ=255) | GTAGCATTAAACCGCTCTCATCAACCATGGTCAGACCCAGTTCGTCTACGTCGCGGAAATGCCGATAAAAAGAGGTGGGAGCAATGCCCGCTTCACGCGCCACTTCACGCAAACTCAGGCTGGCGAAGCTGCGTTC > Exported/2281053‑2281188 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |