| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 2,367,537 | C→T | 42.1% | intergenic (‑85/‑105) | pepQ ← / → fadB | proline dipeptidase/fused 3‑hydroxybutyryl‑CoA epimerase/delta(3)‑cis‑delta(2)‑trans‑enoyl‑CoA isomerase/enoyl‑CoA hydratase and 3‑hydroxyacyl‑CoA dehydrogenase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 2,367,537 | 0 | C | T | 42.1% | 26.8 / 68.5 | 57 | intergenic (‑85/‑105) | pepQ/fadB | proline dipeptidase/fused 3‑hydroxybutyryl‑CoA epimerase/delta(3)‑cis‑delta(2)‑trans‑enoyl‑CoA isomerase/enoyl‑CoA hydratase and 3‑hydroxyacyl‑CoA dehydrogenase |
| Reads supporting (aligned to +/- strand): ref base C (14/19); new base T (16/8); total (30/27) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.07e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.95e-01 | |||||||||||
TTTGACCTTAAGTCTCCGCATCTTAGCACATCGTTCATCCAGAGCGTGATTTCTGCCGAGCGTGATCAGATCGGCATTTCTTTAATCTTTTGTTTGCATATTTTTAACACAAAATACACACTTCGACTCATCTGG > Exported/2367471‑2367605 | tttGACCTTAAGTCTCCGCATCTTAGCACATCGTTCATCCAGAGCGTGATTTCTGCCGAGCGTGATTAg < 1:1630908/69‑1 (MQ=255) tAAGTCTCCGCATCTTAGCACATCGTTCATCCAGAGCGTGATTTCTGCCGAGCGTGATCAGATCGGCAttt > 1:1509256/1‑71 (MQ=255) aGTCTCCGCATCTTAGCACATCGTTCATCCAGAGCGTGATTTCTGCCGAGCGTGATCAGATCGGCATTTCt < 1:2869113/71‑1 (MQ=255) gTCTCCGCATCTTAGCACATCGTTCATCCAGAGCGTGATTTCTGCCGAGCGTGATCAGATCGGCATTTCtt < 1:1934330/71‑1 (MQ=255) tctcCGCATCTTAGCACATCGTTCATCCAGAGCGTGATTTCTGCCGAGCGTGATCAGATCGGCATTTCttt < 1:3408843/71‑1 (MQ=255) cGCATCTTAGCACATCGTTCATCCAGAGCGTGATTTCTGCCGAGCGTGATCAGATCGGCATTTCTTTAAt < 1:3147531/70‑1 (MQ=255) gCATCTTAGCACATCGTTCATCCAGAGCGTGATTTCTGCCGAGCGTGATCAGATCGGCATTTCTTTAATCt > 1:1153358/1‑71 (MQ=255) ttAGCACATCGTTCATCCAGAGCGTGATTTCTGCCGAGCGTGATTAGATCGTCATTTCTTTAATCtttt > 1:1787656/1‑69 (MQ=255) ttAGCACATCGTTCATCCAGAGCGTGATTTCTGCCGAGCGTGATTAGATCGGCATTTCTTTAATCtttt > 1:411875/1‑69 (MQ=255) ttAGCACATCGTTCATCCAGAGCGTGATTTCTGCCGAGCGTGATCAGATCGGCATTTCTTTAATCt > 1:2158012/1‑66 (MQ=255) ttAGCACATCGTTCATCCAGAGCGTGATTTCTGCCGAGCGTGATCAGATCGGCATTTCTTTAATCt > 1:720704/1‑66 (MQ=255) aGCACATCGTTCATCCAGAGGGTGATTTCTGCCGAGCGTGATCAGATCGGCAt < 1:1555531/53‑1 (MQ=255) aGCACATCGTTCATCCAGAGCGTGATTTCTGCCGAGCGTGATCAGATCGGCAt < 1:3261401/53‑1 (MQ=255) aGCACATCGTTCATCCAGAGCGTGATTTCTGCCGAGCGTGATCAGATCGGCAt < 1:3448063/53‑1 (MQ=255) aGCACATCGTTCATCCAGAGCGTGATTTCTGCCGAGCGTGATCAGATCGGCATTTCTTTAATCTtttgt < 1:3091992/69‑1 (MQ=255) aGCACATCGTTCATCCAGAGCGTGATTTCTGCCGAGCGTGATCAGATCGGCATTTCTTTAATCTtttgt < 1:1661034/69‑1 (MQ=255) caTCGTTCATCCAGAGCGTGATTTCTGCCGAGCGTGATTAGATCGGCATTTCttt < 1:2660/55‑1 (MQ=255) aTCGTTCATCCAGAGCGTGATTTCTGCCGAGCGTGATTAGATCg < 1:2381800/44‑1 (MQ=255) aTCGTTCATCCAGAGCGTGATTTCTGCCGAGCGTGATTAGATCg < 1:2259267/44‑1 (MQ=255) aTCGTTCATCCAGAGCGTGATTTCTGCCGAGCGTGATTAGATCg < 1:458920/44‑1 (MQ=255) tCGTTCATCCAGAGCGTGATTTCTGCCGAGCGTGATTAGATCGGCATTTCTTTAATCTtttgttt > 1:2305522/1‑65 (MQ=255) tCGTTCATCCAGAGCGTGATTTCTGCCGAGCGTGATTAGATCGGCATTTCTTTAATCTtttgttt > 1:1451512/1‑65 (MQ=255) ttCATCCAGAGCGTGATTTCTGCCGAGCGTGATCAGATCGGCATTTCTTTAATCTTTTGTTTGCATAtttt < 1:1986811/71‑1 (MQ=255) tCATCCAGAGCGTGATTTCTGCCGAGCGTGATTAGATCGGCATTTCTTTAATCTTTTGTTTGCATAtttt > 1:1464828/1‑70 (MQ=255) tCATCCAGAGAGTGATTTCTGCCGAGCGTGATTAGATCGGCATTTCTTTAATCTTTTGTTTGCat > 1:1454836/1‑65 (MQ=255) gagCGTGATTTCTGCCGAGCGTGATTAGATCGGCATTTCTTTAATCTTTTGTTTGCATATTTTTAACACaa < 1:2069181/71‑1 (MQ=255) cGTGATTTCTGCCGAGCGTGATCAGATCGGCATTTCTTTAATCTTTTGTTTGCATATTTTTAACACaaaa > 1:2980576/1‑70 (MQ=255) gTGATTTCTGCCGAGCGTGATCAGATCGGCATTTCTTTAATCTTTTGTTTGCATATTTTTAACACAAAATa < 1:1907395/71‑1 (MQ=255) gTGATTTCTGCCGAGCGTGATCAGATCGGCATTTCTTTAATCTTTTGTTTGCATATTTTTAACACAAAATa < 1:1698230/71‑1 (MQ=255) gTGATTTCTGCCGAGCGTGATCAGATCGGCATTTCTTTAATCTTTTGTTTGCATATTTTTAACACAAAATa < 1:1682041/71‑1 (MQ=255) gATTTCTGCCGAGCGTGATTAGATCGGCATTTCTTTAATCTTTTGTTTGCATATTTTTAACACAAAATaca > 1:2407305/1‑71 (MQ=255) gATTTCTGCCGAGCGTGATCAGATCGGCATTTCTTTAATCTTTTGTTTGCATATTTTTAACACaaa > 1:2685032/1‑66 (MQ=255) aTTTCTGCCGAGCGTGATCAGATCGGCATTTCTTTAATCtt > 1:262226/1‑41 (MQ=255) ttCTGCCGAGCGTGATCAGATCGGCATTTCTTTAATCTTTTGTTTGCat > 1:87565/1‑49 (MQ=255) tCTGCCGAGCGTGATTAGATCGGCATTTCTTTAATCTTTTGTTTGCATATTTTTAACACAAAATacagac < 1:3040400/70‑1 (MQ=255) ccGAGCGTGATTAGATCGGCATTTCTTTAATCTtttgtttg > 1:183865/1‑41 (MQ=255) ccGAGCGTGATTAGATCGGCATTTCTTTAATCTTTTGTTTGCATATTTTTAACACAAAATACACACtt < 1:998389/68‑1 (MQ=255) ccGAGCGTGATCAGATCGGCATTTCTTTAATCTTTTGTTTGCATATTTTTAACACAAAATACACACTTCGa > 1:2236831/1‑71 (MQ=255) cGAGCGTGATTAGATCGGCATTTCTTTAATCTTTTGTTTGCATATTTTTaa > 1:949488/1‑51 (MQ=255) cGAGCGTGATTAGATCGGCATTTCTTTAATCTTTTGTTTGCATATTTTTaa > 1:1322392/1‑51 (MQ=255) gAGCGTGATTAGATCGGCATTTCTTTAATCTTTTGTTTGCATATTTTTAACACAAAATACACACTTCGAc > 1:3113855/1‑70 (MQ=255) gAGCGTGATTAGATCGGCATTTCTTTAATCTTTTGTTTGCATATTTTTAACACAAAATACACACTTCGACt > 1:3430043/1‑71 (MQ=255) gAGCGTGATTAGATCGGCATTTCTTTAATCTTTTGTTTGCATATTTTTAACACAAAATACACACTTCGACt > 1:961128/1‑71 (MQ=255) gAGCGTGATTAGATCGGCATTTCTTTAATCTTTTGTTTGCATATTTTTAACACAAAATACACACTTCGACt > 1:496643/1‑71 (MQ=255) gCGTGATCAGATCGGCATTTCTTTAATCTtttgtttg > 1:3599461/1‑37 (MQ=255) gCGTGATCAGATCGGCATTTCTTTAATCTtttgtttg > 1:1224096/1‑37 (MQ=255) gCGTGATCAGATCGGCATTTCTTTAATCTtttgttt > 1:164664/1‑36 (MQ=255) gCGTGATCAGATCGGCATTTCTTTAATCTTTTGTTTGCATATTTTTAACACAAAATACACACTTCGACTCa < 1:3311538/71‑1 (MQ=255) gCGTGATCAGATCGGCATTTCTTTAATCTTTTGTTTGCATATTTTTAACACAAAATACACACTTCGACTCa < 1:3307186/71‑1 (MQ=255) gATTAGATCGGCATTTCTTTAATCTTTTGTTTGCATATTTTTAACACAAAATACACACTTCGACTCATCTg > 1:3335343/1‑71 (MQ=255) gATTAGATCGGCATTTCTTTAATCTTTTGTTTGCATATTTTTAACACAAAATACACACTTCGACTCATCTg > 1:2712308/1‑71 (MQ=255) aTCAGATCGGCATTTCTTTAATCTTTTGTTTGCATATTTTTAACACAAAATACACACTTCGACTCATCTgg > 1:2874440/1‑71 (MQ=255) aTCAGATCGGCATTTCTTTAATCTTTTGTTTGCATATTTTTAACACAAAATACACACTTCGACTCATCTgg > 1:1073861/1‑71 (MQ=255) aTCAGATCGGCATTTCTTTAATCTTTTGTTTGCATATTTTTAACACAAAATACACACTTCGACTCATCTg < 1:3682802/70‑1 (MQ=255) aTCAGATCGGCATTTCTTTAATCTTTTGTTTGCATATTTTTAACACAAAATACACACTTCGACTCATCTg < 1:1199817/70‑1 (MQ=255) aTCAGATCGGCATTTCTTTAATCTTTTGTTTGCATATTTTTAACACAAAATACACACTTCGACTCATCTg < 1:2197024/70‑1 (MQ=255) aTCAGATCGGCATTTCTTTAATCTTATGTTTGCATATTTTTAACACAAAATACACACTTCGACTCATCTg < 1:3277797/70‑1 (MQ=255) | TTTGACCTTAAGTCTCCGCATCTTAGCACATCGTTCATCCAGAGCGTGATTTCTGCCGAGCGTGATCAGATCGGCATTTCTTTAATCTTTTGTTTGCATATTTTTAACACAAAATACACACTTCGACTCATCTGG > Exported/2367471‑2367605 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |