| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 2,523,621 | C→T | 71.0% | G32S (GGT→AGT) | dinD ← | DNA‑damage‑inducible protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 2,523,621 | 0 | C | T | 71.0% | 102.2 / 52.0 | 69 | G32S (GGT→AGT) | dinD | DNA‑damage‑inducible protein |
| Reads supporting (aligned to +/- strand): ref base C (6/14); new base T (31/18); total (37/32) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.68e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CCACTGTTCTCACAGGCTTCTTTGGCGCGCGTTAATACAGGTATAAAGTGACGATACTCTGAATAACCCAGTAGTTTCCCAAGTTGTCTTGCTGACCATTGTTCTGCTCCGTTTGCATTAATCAGTTTTATCTCTT > Exported/2523554‑2523689 | ccACTGTTCTCACAGGCTTCTTTGGCGCGCGTTAATGCAGGTATAAAGTGACGATACTGTGAATAACTCag > 1:2324409/1‑71 (MQ=255)ccACTGTTCTCACAGGCTTCTTTGGCGCGCGTTAATACAGGTATAAAGTGACGATACTCTGAATAACTCag > 1:837556/1‑71 (MQ=255)ccACTGTTCTCACAGGCTTCTTTGGCGCGCGTTAATACAGGTATAAAGTGACGATACTCTGAATAACTCag > 1:2280899/1‑71 (MQ=255)ccACTGTTCTCACAGGCTTCTTTGGCGCGCGTTAATACAGGTATAAAGTGACGATACTCTGAATAACTCag > 1:2960825/1‑71 (MQ=255)ccACTGTTCTCACAGGCTTCTTTGGCGCGCGTTAATACAGGTATAAAGTGACGATACTCTGAATAACTCag > 1:806298/1‑71 (MQ=255) aCTGTTCTCACAGGCTTCTTTGGCGCGCGTTAATACAGGTATAAAGTGACGATACTCTGAATAACTCag > 1:431958/1‑69 (MQ=255) cTGTTCTCACAGGCTTCTTTGGCGCGCGTTAATACAGGTATAAAGTGACGATACTCTGAATAACTCagta > 1:581922/1‑70 (MQ=255) ttCTCACAGGCTTCTTTGGCGCGCGTTAATACAGGTATAAAGTGACGATACTCTGAATAACCCAGTAGttt < 1:1064709/71‑1 (MQ=255) ttCTCACAGGCTTCTTTGGCGCGCGTTAATACAGGTATAAAGTGACGATACTCTGAATAACCCAGTAGttt < 1:1467708/71‑1 (MQ=255) ttCTCACAGGCTTCTTTGGCGCGCGTTAATACAGGTATAAAGTGACGATACTCTGAATAACCCAGTAGtt < 1:2914408/70‑1 (MQ=255) ctcACAGGCTTCTTTGGCGCGCGTTAATACAGGTATAAAGTGACGATACTCTGAATAACCCAGTAGTTTcc > 1:2312310/1‑71 (MQ=255) caGGCTTCTTTGGCGCGCGTTAATACAGGTATAAAGTGACGATACTCTGAATAACTCAGTAGTTTCCCAAg > 1:2563758/1‑71 (MQ=255) cttcttTGGCGCGCGTTAATACAGGTATAAAGTGACGATACTCTGAATAACTCagtagt < 1:2884031/59‑1 (MQ=255) cttTGGCGCGCGTTAATACAGGTATAAAGTGACGATACTCTGAATAACCCAGTAGTTTCCCAAGTTGTc < 1:1569145/69‑1 (MQ=255) tttGGCGCGCGTTAATACAGGTATAAAGTGACGATACTCTGAATAACTCAGTAGTTTCCCAAGTTGTCt < 1:3674503/69‑1 (MQ=255) tGGCGCGCGTTAATACAGGTATAAAGTGACGATACTCTGAATAACTCAGTAGTTTCCCAAGTTGt > 1:2514407/1‑65 (MQ=255) ggCGCGCGTTAATACAGGTATAAAGTGACGATACTCTGAATAACCCAGTAGTTTCCCAAGTTGTCTTGCt > 1:2494199/1‑70 (MQ=255) gcgTTAATACAGGTATAAAGTGACGATACTCTGAATAACTCAGTAGTTTCCCAAGTTGTCTTGCTGACCAt > 1:3725351/1‑71 (MQ=255) gcgTTAATACAGGTATAAAGTGACGATACTCTGAATAACTCAGTAGTTTCCCAAGTTGTCTTGCTGACCAt < 1:681036/71‑1 (MQ=255) gcgTTAATACAGGTATAAAGTGACGATACTCTGAATAACTCAGTAGTTTCCCAAGTTGTCTTGCTGACCAt < 1:1248674/71‑1 (MQ=255) cgTTAATACAGGTATAAAGTGACGATACTCTGAATAACCCAGTAGTTTCCCAAGTTGTCTTGCTGACCAtt < 1:2831537/71‑1 (MQ=255) gTTAATACAGGTATAAAGTGACGATACTCTGAATAACTCagtag < 1:2979419/44‑1 (MQ=255) gTTAATACAGGTATAAAGTGACGATACTCTGAATAACTCagtag < 1:2343150/44‑1 (MQ=255) gTTAATACAGGTATAAAGTGACGATACTCTGAATAACTCagtag < 1:1040900/44‑1 (MQ=255) gTTAATACAGGTATAAAGTGACGATACTCTGAATAACTCagtag < 1:2202235/44‑1 (MQ=255) ttAATACAGGTATAAAGTGACGATACTCTGAATAACCCagt < 1:556554/41‑1 (MQ=255) aaTACAGGTATAAAGTGACGATACTCTGAATAACTCAGTAGTTTCCCAAGTTGTCTTGCTGACCATTGtt < 1:1147867/70‑1 (MQ=255) aaTACAGGTATAAAGTGACGATACTCTGAATAACTCAGTAGTTTCCCAAGTTGTCTTGCTGACCATTGTTc > 1:2500943/1‑71 (MQ=255) aaTACAGGTATAAAGTGACGATACTCTGAATAACCCAGTAGTTTCCCAAGTTGTCTTGCTGACCATTg > 1:90895/1‑68 (MQ=255) aaTACAGGTATAAAGTGACGATACTCTGAATAACCCAGTAGTTTCCCAAGTTGTCTTGCTGACCATTGtt < 1:3135897/70‑1 (MQ=255) aaTACAGGTATAAAGTGACGATACTCTGAATAACCCAGTAGTTTCCCAAGTTGTCTTGCTGACCATTGtt < 1:2854430/70‑1 (MQ=255) aTACAGGTATAAAGTGACGATACTCTGAATAACCCAGTAGTTTCCCAAGTTGTCTTGCTGACCATTGtt < 1:1155778/69‑1 (MQ=255) cAGGTATAAAGTGACGATACTCTGAATAACTCAGTAGTTTCCCAAGTTGTCTTGCTGACCATTGTTCTGCt > 1:155570/1‑71 (MQ=255) cAGGTATAAAGTGACGATACTCTGAATAACCCAGTAGTTTCCCAAGTTGTCTTGCTGACCATTGTTCTGc < 1:2816591/70‑1 (MQ=255) ggTATAAAGTGACGATACTCTGAATAACCCAGTAGTTTCCCAAGTTGTCTTGCTGACCATTGTTCTGCTcc > 1:2894489/1‑71 (MQ=255) taAAGTGACGATACTCTGAATAACTCAGTAGTTTCCCAAGTTGTCtt < 1:2201582/47‑1 (MQ=255) taAAGTGACGATACTCTGAATAACCCAGTAGTTTCCCAAGTTGTCTTGCt < 1:1715478/50‑1 (MQ=255) aaaGTGACGATACTCTGAATAACTCAGTAGTTTCCCAAGTTGTCTTGc > 1:2332736/1‑48 (MQ=255) aaaGTGACGATACTCTGAATAACTCAGTAGTTTCCCAAGTTGTCTTGc > 1:394971/1‑48 (MQ=255) aaGTGACGATACTCTGAATAACTCAGTAGTTTCCCAAGTTGTCt > 1:2540686/1‑44 (MQ=255) aaGTGACGATACTCTGAATAACTCAGTAGTTTCCCAAGTTGTCt > 1:1057492/1‑44 (MQ=255) aaGTGACGATACTCTGAATAACTCAGTAGTTTCCCAAGTTGTCt > 1:630101/1‑44 (MQ=255) aaGTGACGATACTCTGAATAACTCAGTAGTTTCCCAAGTTGTCt > 1:2989914/1‑44 (MQ=255) aGTGACGATACTCTGAATAACTCAGTAGTTTCCCAAGTTGTCTTGCTGACCATTGTTCTGCTCCGTTTGCa > 1:2185977/1‑71 (MQ=255) gTGACGATACTCTGAATAACTCAGTAGTTTCCCAAGTTGTCTTGCTGACCATTGTTCTGCTCCGTTTGCAt > 1:1736119/1‑71 (MQ=255) gTGACGATACTCTGAATAACTCAGTAGTTTCCCAAGTTGTCTTGCTGACCATTGTTCTGCTCCGTTTGCAt > 1:2013025/1‑71 (MQ=255) tgccGAAACTCTGAATAACTCAGTAGTTTCCCAAGTTGTCTTGCTGACCATTGTTCTGCTCCGTTTGCa > 1:8561/4‑69 (MQ=255) tGACGATACTCTGAATAACTCAGTAGTTTCCCAAGTTGTCTTGCTGACCATTGt < 1:1875701/54‑1 (MQ=255) tGACGATACTCTGAATAACTCAGTAGTTTCCCAAGTTGTCTTGCTGACCATTGt < 1:1720011/54‑1 (MQ=255) tGACGATACTCTGAATAACTCAGTAGTTTCCCAAGTTGTCTTGCTGACCATTGTTCTGc < 1:522853/59‑1 (MQ=255) tGACGATACTCTGAATAACTCAGTAGTTTCCCAAGTTGTCTTGCTGACCATTGTTCTGc < 1:1639329/59‑1 (MQ=255) gACGATACTCTGAATAACTCAGTAGTTTCCCAAGTTGTCTTGCTGACCATTGTTCTGCTCCGTTTGCAtt > 1:1453923/1‑70 (MQ=255) gACGATACTCTGAATAACTCAGTAGTTTCCCAAGTTGTCTTGCTGACCATTGTTCTGCTCCGTTTGCAtt > 1:1378911/1‑70 (MQ=255) gACGATACTCTGAATAACTCAGTAGTTTCCCAAGTTGTCTTGCTGACCATTGTTCTGCTCCGTTTGCAt > 1:3619432/1‑69 (MQ=255) aCGATACTCTGAATAACTCAGTAGTTTCCCAAGTTGTCTTGCTGACCATTGTTCTGCTc > 1:570173/1‑59 (MQ=255) aCGATACTCTGAATAACTCAGTAGTTTCCCAAGTTGTCTTGCTGACCATTGTTCTGCTCCGTTTGCATTa < 1:3069784/70‑1 (MQ=255) gATACTCTGAATAACTCAGTAGTTTCCCAAGTTGTCTTGCTGACCATTGTTCTGCTCCGTTTg > 1:3397890/1‑63 (MQ=255) ctctGAATAACCCAGTAGTTTCCCAAGTTGTCTTGCTGACCATTGTTCTGCTCCGTTTGCATTAATCAGt < 1:2626431/70‑1 (MQ=255) tctGAATAACTCAGTAGTTTCCCAAGTTGTCTTGCTGACCATTg < 1:2367939/44‑1 (MQ=255) tctGAATAACTCAGTAGTTTCCCAAGTTGTCTTGCTGACCATTg < 1:3042568/44‑1 (MQ=255) tctGAATAACTCAGTAGTTTCCCAAGTTGTCTTGCTGACCATTg < 1:232513/44‑1 (MQ=255) tctGAATAACCCAGTAGTTTCCCAAGTTGTCTTGCTGACCATTg < 1:2765517/44‑1 (MQ=255) tctGAATAACCCAGTAGTTTCCCAAGTTGTCTTGCTGACCATTg < 1:2630760/44‑1 (MQ=255) tGAATAACTCAGTAGTTTCCCAAGTTGTCTTGCTGACCATTGtt > 1:2194078/1‑44 (MQ=255) tAACTCAGTAGTTTCCCAAGTTGTCTTGCTGACCATTGTTCTGCTCCGtt > 1:1015319/1‑50 (MQ=255) tAACTCAGTAGTTTCCCAAGTTGTCTTGCTGACCATTGTTCTGCTCCGTTTGCATTAATCAGTTTTAtctc > 1:3733987/1‑71 (MQ=255) tAACTCAGTAGTTTCCCAAGTTGTCTTGCTGACCATTGTTCTGCTCCGTTTGCATTAATCAGTTTTAtctc > 1:2795224/1‑71 (MQ=255) aCCCAGTAGTTTCCCAAGTTTTCTTGCTGACCATTGTTCTGCTCCGTTTGCATTAATCAGTTTTATCTCtt > 1:902543/1‑71 (MQ=255) aCCCAGTAGTTTCCCAAGTTGTCTTGCTGACCATTGTTCTGCTCCGTTTGCATTAATCAGTTTTATCTCtt > 1:10991/1‑71 (MQ=255) | CCACTGTTCTCACAGGCTTCTTTGGCGCGCGTTAATACAGGTATAAAGTGACGATACTCTGAATAACCCAGTAGTTTCCCAAGTTGTCTTGCTGACCATTGTTCTGCTCCGTTTGCATTAATCAGTTTTATCTCTT > Exported/2523554‑2523689 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |