| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 2,572,487 | A→G | 13.3% | intergenic (+1255/‑524) | yibH → / → ysaB | hypothetical protein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 2,572,487 | 0 | A | G | 13.3% | 200.3 / 20.4 | 75 | intergenic (+1255/‑524) | yibH/ysaB | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (34/31); new base G (4/6); total (38/37) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.16e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.18e-01 | |||||||||||
TATGCCGTCAGGTTTTCTATTGCTTGCTCCCGGGTCATTAACATTCCAACTCCATAGGCCTTGAGGTATTAGCCATCTATTTATAAATGTGTACAACGGGGATTATTTTTACATTGCATATTATTACCAGAAGCGACTG > Exported/2572417‑2572555 | tATGCCGTCAGGTTTTCTATTGCTTGCTCCCGGGTCATTAACATTCCAACTCCATAGGCCTTGAGGTATTa < 1:1706495/71‑1 (MQ=255) tGCCGTCAGGTTTTCTATTGCTTGCTCCCGGGTCATTAACATTCCAACTCCATAGGCCTTGAGGTATTAg < 1:2969598/70‑1 (MQ=255) tGCCGTCAGGTTTTCTATTGCTTGCTCCCGGGTCATTAACATTCCAACTCCATAGGCCTTGAGGTATTAGc < 1:2118040/71‑1 (MQ=255) ttttCTATTGCTTGCTCCCGGGTCATTAACATTCCAACTCCATAGGCCTTGAGGTATTAGCCATCTATTta < 1:2094796/71‑1 (MQ=255) ttttCTATTGCTTGCTCCCGGGTCATTAACATTCCAACTCCATAGGCCTTGAGGTATTAGCCATCTATTta > 1:695270/1‑71 (MQ=255) ttttCTATTGCTTGCTCCCGGGTCATTAACATTCCAACTCCATAGGCCTTGAGGTATTAGCCATCTATTta < 1:1980591/71‑1 (MQ=255) ttttCTATTGCTTGCTCCCGGGTCATTAACATTCCAACTCCATAGGCCTTGAGGTATTAGCCATCTATTta < 1:1711207/71‑1 (MQ=255) tttCTATTGCTTGCTCCCGGGTCATTAACATTCCAACTCCATAGGCCTTGAGGTATTAGCCATCTATTta > 1:3178750/1‑70 (MQ=255) tCTATTGCTTGCTCCCGGGTCATTAACATTCCAACTCCATAGGCCTTGAGGTATTAGCCATCTATTtata < 1:351166/70‑1 (MQ=255) tCTATTGCTTGCTCCCGGGTCATTAACATTCCAACTCCATAGGCCTTGAGGTATTAGCCATCTATTtata < 1:3327674/70‑1 (MQ=255) cTATTGCTTGCTCCCGGGTCATTAACATTCCAACTCCATAGGCCTTGAGGTATTAGCCATCTATTTATaaa > 1:3037807/1‑71 (MQ=255) ttgcttgcTCCCGGGTCATTAACATTCCAACTCCATAGGCCTTGAGGTATTAGCCATCTATTtat < 1:1403811/65‑1 (MQ=255) ttgcttgcTCCCGGGTCATTAACATTCCAACTCCATAGGCCTTGAGGTATTAGCCATCTATTtat < 1:2599088/65‑1 (MQ=255) cttgctCCCGGGTCATTAACATTCCAACTCCATAGGCCTTGAGGTATTAGCCATCTATTTATaa < 1:2766502/64‑1 (MQ=255) tgctCCCGGGTCATTAACATTCCAACTCCATAGGCCTTGAGGTATTAGCCATCTATTTATAAATGTGTAc > 1:2076148/1‑70 (MQ=255) gctCCCGGGTCATTAACATTCCAACTCCATAGGCCTTGAGGTATTGGCCATCTATTTATAAATGTGTACaa > 1:1072681/1‑71 (MQ=255) gctCCCGGGTCATTAACATTCCAACTCCATAGGCCTTGAGGTATTAGCCATCTATTTATAAATGTGTACa < 1:2887650/70‑1 (MQ=255) ctCCCGGGTCATTAACATTCCAACTCCATAGGCCTTGAGGTATTGGCCATCTATTTATAAATGTGTACaa < 1:2698685/70‑1 (MQ=255) ctCCCGGGTCATTAACATTCCAACTCCATAGGCCTTGAGGTATTGGCCATCTATTTATAAATGTGTACaa < 1:2141018/70‑1 (MQ=255) ctCCCGGGTCATTAACATTCCAACTCCATAGGCCTTGAGGTATTGGCCATCTATTTATAAATGTGTACAAc > 1:1615545/1‑71 (MQ=255) ctCCCGGGTCATTAACATTCCAACTCCATAGGCCTTGAGGTATTAGCCATCTATTTATAAATGTGTACAAc > 1:1835470/1‑71 (MQ=255) ctCCCGGGTCATTAACATTCCAACTCCATAGGCCTTGAGGTATTAGCCATCTATTTATAAATGTGTACAAc > 1:101386/1‑71 (MQ=255) tCCCGGGTCATTAACATTCCAACTCCATAGGCCTTGAGGTATTAGCCATCTATTTATAAATGTGTACAACg > 1:2050285/1‑71 (MQ=255) ccGGGTCATTAACATTCCAACTCCATAGGCCTTGAGGTATTAGCCATCTATTTATAAATGTGTACAACg < 1:1744106/69‑1 (MQ=255) cGGGTCATTAACATTCCAACTCCATAGGCCTTGAGGTATTAGCCATCTATTTATAAATGTGTACAACggg > 1:903323/1‑70 (MQ=255) gggTCATTAACATTCCAACTCCATAGGCCTTGAGGTATTGGCCATCTATTTATAAATGTGTACAACGGGGa < 1:163864/71‑1 (MQ=255) gggTCATTAACATTCCAACTCCATAGGCCTTGAGGTATTAg > 1:1425145/1‑41 (MQ=255) gggTCATTAACATTCCAACTCCATAGGCCTTGAGGTATTAGCCATCTATTTATAAATGTGTACAACGGGGa < 1:1542032/71‑1 (MQ=255) gggTCATTAACATTCCAACTCCATAGGCCTTGAGGTATTAGCCATCTATTTATAAATGTGTACAACGGGGa < 1:613559/71‑1 (MQ=255) ggTCATTAACATTCCAACTCCATAGGCCTTGAGGTATTAGCCATCTATTTATAAATGTGTACAACGGGGat < 1:2577989/71‑1 (MQ=255) tCATTAACATTCCAACTCCATAGGCCTTGAGGTATTAGCCATCTATTTATAAATGTGTACAACGGGGatt < 1:63402/70‑1 (MQ=255) tCATTAACATTCCAACTCCATAGGCCTTGAGGTATTAGCCATCTATTTATAAATGTGTACAACGGGGatt < 1:2633292/70‑1 (MQ=255) aTTAACATTCCAACTCCATAGGCCTTGAGGTATTGGCCATCTATTTATAAATGTGTACAACGGGGattat < 1:869440/70‑1 (MQ=255) aTTAACATTCCAACTCCATAGGCCTTGAGGTATTAGCCATCTATTTATAAATGTGTACAACGGGGattat < 1:3670738/70‑1 (MQ=255) aTTAACATTCCAACTCCATAGGCCTTGAGGTATTAGCCATCTATTTATAAATGTGTACAACGGGGattat < 1:2667569/70‑1 (MQ=255) ttAACATTCCAACTCCATAGGCCTTGAGGTATTGGCCATCTAt < 1:2864669/43‑1 (MQ=255) ttAACATTCCAACTCCATAGGCCTTGAGGTATTGGCCATCTAt < 1:1820636/43‑1 (MQ=255) ttAACATTCCAACTCCATAGGCCTTGAGGTATTAGCCATCTATTTATAAATGTGTACAACGGGGATTAttt > 1:3190274/1‑71 (MQ=255) ttAACATTCCAACTCCATAGGCCTTGAGGTATTAGCCATCTATTTATAAATGTGTACAACGGGGATTAttt > 1:3377502/1‑71 (MQ=255) aaCATTCCAACTCCATAGGCCTTGAGGTCTTAGCCATCTATTTATAAATGTGTACAACGGGGATTAtttt < 1:1823261/70‑1 (MQ=255) aCATTCCAACTCCATAGGCCTTGAGGTATTAGCCATCTATTTATAAATGTGTACAACGGGGATTATTTTTa > 1:760695/1‑71 (MQ=255) cATTCCAACTCCATAGGCCTTGAGGTATTAGCCATCTATTTATAAATGTGTACAACGGGGATTATTTTTa > 1:79855/1‑70 (MQ=255) tCCAACTCCATAGGCCTTGAGGTATTAGCCATCTATTTATAAATGTGTAc > 1:612440/1‑50 (MQ=255) tCCAACTCCATAGGCCTTGAGGTATTAGCCATCTATTTATAAATGTGTAc > 1:128734/1‑50 (MQ=255) tCCAACTCCATAGGCCTTGAGGTATTAGCCATCTATTTATAAATGTGTAc > 1:2270410/1‑50 (MQ=255) ccAACTCCATAGGCCTTGAGGTATTAGCCATCTATTta > 1:2433082/1‑38 (MQ=255) ccAACTCCATAGGCCTTGAGGTATTAGCCATCTATTta > 1:2307531/1‑38 (MQ=255) ccAACTCCATAGGCCTTGAGGTATTAGCCATCTATTTATaa < 1:3692908/41‑1 (MQ=255) cAACTCCATAGGCCTTGAGGTATTAGCCATCTATTTATAAATGTGTACAACGGGGATTATTTTTACATTg < 1:320315/70‑1 (MQ=255) cAACTCCATAGGCCTTGAGGTATTAGCCATCTATTTATAAATGTGTACAACGGGGATTATTTTTACATTGc < 1:3070558/71‑1 (MQ=255) aaCTCCATAGGCCTTGAGGTATTAGCCATCTATTTATAAATGTGTACAACGGGGattatt < 1:251878/60‑1 (MQ=255) cTCCATAGGCCTTGAGGTATTAGCCATCTATTTATAAATGTGTACAACGGGGATTATTTTTACATTGCata < 1:1076396/71‑1 (MQ=255) cTCCATAGGCCTTGAGGTATTAGCCATCTATTTATAAATGTGTACAACGGGGATTATTTTTACATTGCata < 1:2590508/71‑1 (MQ=255) cTCCATAGGCCTTGAGGTATTAGCCATCTATTTATAAATGTGTACAACGGGGATTATTTTTACATTGCat > 1:3129248/1‑70 (MQ=255) ccATAGGCCTTGAGGTATTAGCCATCTATTTATAAATGTGTACAACgg > 1:1425500/1‑48 (MQ=255) ccATAGGCCTTGAGGTATTAGCCATCTATTTATAAATGTGTACAACGGGGatta < 1:1702629/54‑1 (MQ=255) cATAGGCCTTGAGGTATTAGCCATCTATTTATAAATGTGTACAACGGGGATTATTTTTa < 1:2447418/59‑1 (MQ=255) tAGGCCTTGAGGTATTGGCCATCTATTTATAAATGTGTACAACGGGGattat > 1:3372007/1‑52 (MQ=255) tAGGCCTTGAGGTATTAGCCATCTATTTATAAATGTGTACAACgggg > 1:3582783/1‑47 (MQ=255) tAGGCCTTGAGGTATTAGCCATCTATTTATAAATGTGTACAACGGGGATTATTTTTACATTGCAtattat > 1:2027299/1‑70 (MQ=255) ggCCTTGAGGTATTAGCCATCTATTTATAAATGTGTACAACGGGGATTATTTTTACATTGCata > 1:304899/1‑64 (MQ=255) gCCTTGAGGTATTAGCCATCTATTTATAAATGTGTACAACGGGGATTATTTTTACATTGCATATTATTAc > 1:452515/1‑70 (MQ=255) ccTTGAGGTATTAGCCATCTATTTATAAATGTGTACAACGGGGATTATTTTTACATTGCATATTATTAc > 1:821776/1‑69 (MQ=255) cTTGAGGTATTGGCCATCTATTTATAAATGTGTACAACGGGGATTATTTTTACATTGCATATTATTAc > 1:2858601/1‑68 (MQ=255) cTTGAGGTATTAGCCATCTATTTATAAATGTGTACAACGGGGATTATTTTTACATTGCATATTATTACCAg < 1:1201218/71‑1 (MQ=255) tGAGGTATTAGCCATCTATTTATAAATGTGTACAACg > 1:2885249/1‑37 (MQ=255) tGAGGTATTAGCCATCTATTTATAAATGTGTACAACGGGGATTATTTTTACATTGCATATTATTACCAg > 1:3199139/1‑69 (MQ=255) tGAGGTATTAGCCATCTATTTATAAATGTGTACAACGGGGATTATTTTTACATTGCATATTATTACCAg > 1:30467/1‑69 (MQ=255) tGAGGTATTAGCCATCTATTTATAAATGTGTACAACGGGGATTATTTTTACATTGCATATTATTACCAg > 1:728570/1‑69 (MQ=255) gAGGTATTAGCCATCTATTTATAAATGTGTACAACGGGGATTATTTTTACAt > 1:290535/1‑52 (MQ=255) gAGGTATTAGCCATCTATTTATAAATGTGTACAACGGGGATTATTTTTACATTGCATATTATTACCAGaa < 1:2409516/70‑1 (MQ=255) aGGTATTAGCCATCTATTTATAAATGTGTACAACGGGGATTATTTTTACATTGCATATTATTACCAGAAGc > 1:2386953/1‑71 (MQ=255) gTATTAGCCATCTATTTATAAATGTGTACAACGGGGATTATTTTTACATTGCATATTATTACCAGAAGCGa > 1:2896732/1‑71 (MQ=255) aTTAGCCATCTATTTATAAATGTGTACAACGGGGATTATTTTTACATTGCATATTATTACCAGAAGCGACt > 1:799605/1‑71 (MQ=255) ttAGCCATCTATTTATAAATGTGTACAACGGGGATTATTTTTACATTGCATATTATTACCAGa < 1:745963/63‑1 (MQ=255) tAGCCATCTATTTATAAATGTGTACAACGGGGATTATTTTTACATTGCATATTATTACCAGAAGCGACTg > 1:1452331/1‑70 (MQ=255) aGCCATCTATTTATAAATGTGTACAACGGGGATTATTTTTACATTGCAtattat > 1:1399105/1‑54 (MQ=255) aGCCATCTATTTATAAATGTGTACAACGGGGATTATTTTTACATTGCATATTATTACCAGAAGCg < 1:2629929/65‑1 (MQ=255) aGCCATCTATTTATAAATGTGTACAACGGGGATTATTTTTACATTGCATATTATTACCAGAAGCGACTg < 1:833357/69‑1 (MQ=255) | TATGCCGTCAGGTTTTCTATTGCTTGCTCCCGGGTCATTAACATTCCAACTCCATAGGCCTTGAGGTATTAGCCATCTATTTATAAATGTGTACAACGGGGATTATTTTTACATTGCATATTATTACCAGAAGCGACTG > Exported/2572417‑2572555 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |