| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 2,625,149 | G→A | 35.2% | R16H (CGT→CAT) | ftsX → | predicted transporter subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 2,625,149 | 0 | G | A | 35.2% | 76.2 / 68.5 | 71 | R16H (CGT→CAT) | ftsX | predicted transporter subunit |
| Reads supporting (aligned to +/- strand): ref base G (19/27); new base A (14/11); total (33/38) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.20e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CTTGCATGGAGGCGTGGGCCATGAATAAGCGCGATGCAATCAATCATATTCGGCAGTTTGGCGGGCGTCTTGATCGCTTCCGTAAATCGGTCGGCGGCTCAGGCGACGGCGGTCGTAACGCACCAAAACGC > Exported/2625083‑2625213 | cTTGCATGGAGGCGTGGGCCATGAATAAGCGCGATGCAATCAATCATATTCGGCAGTTTGGCGGGCATCtt < 1:1144298/71‑1 (MQ=255)cTTGCATGGAGGCGTGGGCCATGAATAAGCGCGATGCAATCAATCATATTCGGCAGTTTGGCGGGCATCtt < 1:682085/71‑1 (MQ=255)cTTGCATGGAGGCGTGGGCCATGAATAAGCGCGATGCAATCAATCATATTCGGCAGTTTGGCGGGCATCtt < 1:2409808/71‑1 (MQ=255)cTTGCATGGAGGCGTGGGCCATGAATAAGCGCGATGCAATCAATCATATTCGGCAGTTTGGCGGGCATCtt < 1:1669923/71‑1 (MQ=255) gCATGGAGGCGTGGGCCATGAATAAGCGCGATGCAATCAATCATATTCGGCAGTTTGGCGGGCGTCTTg < 1:3623984/69‑1 (MQ=255) gCATGGAGGCGTGGGCCATGAATAAGCGCGATGCAATCAATCATATTCGGCAGTTTGGCGGGCGTCTTg < 1:3304523/69‑1 (MQ=255) gCATGGAGGCGTGGGCCATGAATAAGCGCGATGCAATCAATCATATTCGGCAGTTTGGCGGGCATCt > 1:1342592/1‑67 (MQ=255) gCATGGAGGCGTGGGCCATGAATAAGCGCGATGCAATCAATCATATTCGGCAGTTTGGCGGGCATCt > 1:1953631/1‑67 (MQ=255) cATGGAGGCGTGGGCCATGAATAAGCGCGATGCAATCTATCATATTCGGCAGTTTGGCGGGCGTCTTg < 1:3215687/68‑1 (MQ=255) cATGGAGGCGTGGGCCATGAATAAGCGCGATGCAATCAATCATATTCGGCAGTTTGGCGGGCGTCTTg < 1:2379569/68‑1 (MQ=255) aTGGAGGCGTGGGCCATGAATAAGCGCGATGCAATCAATCATATTCGGCAGTTTGGCGGGCGTCTTGATCg > 1:1068300/1‑71 (MQ=255) tGGAGGCGTGGGCCATGAATAAGCGCGATGCAATCAATCATATTCGGCAGTTTGGCGGGCGTCTTGAt > 1:2052070/1‑68 (MQ=255) tGGAGGCGTGGGCCATGAATAAGCGCGATGCAATCAATCATATTCGGCAGTTTGGCGGGCGTCTTGAt > 1:3112897/1‑68 (MQ=255) tGGAGGCGTGGGCCATGAATAAGCGCGATGCAATCAATCATATTCGGCAGTTTGGCGGGCGTCTTGATCGc < 1:3487935/71‑1 (MQ=255) tGGAGGCGTGGGCCATGAATAAGAGCGATGCAATCAATCATATTCGGCAGTTTGGCGGGCGTCTTGa > 1:2737740/1‑67 (MQ=255) ggCGTGGGCCATGAATAAGCGCGATGCAATCAATCATATTCGGCAGTTTGGCGGGCGTCTTGATCGCTTcc < 1:2277731/71‑1 (MQ=255) ggCGTGGGCCATGAATAAGCGCGATGCAATCAATCATATTCGGCAGTTTGGCGGGCGTCTTGATCGCTTcc < 1:2156771/71‑1 (MQ=255) gCGTGGGCCATGAATAAGCGCGATGCAATCAATCATATTCGGCAGTTTGGCGGGCGTCTTGATCGCTTCCg < 1:3383654/71‑1 (MQ=255) gCGTGGGCCATGAATAAGCGCGATGCAATCAATCATATTCGGCAGTTTGGCGGGCGTCTTGATCGCTTCCg < 1:3387564/71‑1 (MQ=255) gCGTGGGCCATGAATAAGCGCGATGCAATCAATCATATTCGGCAGTTTGGCGGGCATCTTGATCGCTTCCg < 1:2263194/71‑1 (MQ=255) tGGGCCATGAATAAGCGCGATGCAATCAATCATATTCGGCAGTTTGGCGGGCGTCTTGATCGCTTCCGTaa < 1:3308893/71‑1 (MQ=255) tGGGCCATGAATAAGCGCGATGCAATCAATCATATTCGGCAGTTTGGCGGGCGTCTTGATCGCTTCCGTaa < 1:3418863/71‑1 (MQ=255) tGGGCCATGAATAAGCGCGATGCAATCAATCATATTCGGCAGTTTGGCGGGCGTCTTGATCGCTTCCGTaa < 1:3573251/71‑1 (MQ=255) tGGGCCATGAATAAGCGCGATGCAATCAATCATATTCGGCAGTTTGGCGGGCGTCTTGATCGCTTCCGTaa < 1:2019825/71‑1 (MQ=255) gggCCATGAATAAGCGCGATGCAATCAATCATATTCGGCAGTTTGGCGGGCATCTTGATCGCtt > 1:2534334/1‑64 (MQ=255) ggCCATGAATAAGCGCGATGCAATCAATCATATTCGGCAGTTTGGCGGGCATCTTGAt > 1:1960844/1‑58 (MQ=255) ggCCATGAATAAGCGCGATGCAATCAATCATATTCGGCAGTTTGGCGGGCATCTTGAt > 1:1377848/1‑58 (MQ=255) ccATGAATAAGCGCGATGCAATCAATCATATTCGGCAGTTTGGCGGGCGTCTTGATCGCTTCCGTaaa > 1:3625313/1‑68 (MQ=255) ccATGAATAAGCGCGATGCAATCAATCATATTCGGCAGTTTGGCGGGCGTCTTGATCGCTTCCGTAAAtcg > 1:903319/1‑71 (MQ=255) ccATGAATAAGCGCGATGCAATCAATCATATTCGGCAGTTTGGCGGGCGTCTTGATCGCTTCCGTAAAtcg < 1:1246021/71‑1 (MQ=255) ccATGAATAAGCGCGATGCAATCAATCATATTCGGCAGTTTGGCGGGCATCTTGATCGCTTCCGTAAAtcg < 1:1676624/71‑1 (MQ=255) cATGAATAAGCGCGATGCAATCAATCATATTCGGCAGTTTGGCGGGCGTCt < 1:3385858/51‑1 (MQ=255) aTGAATAAGCGCGATGCAATCAATCATATTCGGCAGTTTGGCGGGCGTCTTGATCGCTTCCGTAAAtcggt < 1:1669772/71‑1 (MQ=255) aTGAATAAGCGCGATGCAATCAATCATATTCGGCAGTTTGGCGGGCATCTTGATCGCTTCCGTAAAtcggt > 1:1661566/1‑71 (MQ=255) tGAATAAGCGCGATGCAATCAATCATATTCGGCAGTTTGGCGGGCGTCTTg < 1:954598/51‑1 (MQ=255) gAATAAGCGCGATGCAATCAATCATATTCGGCAGTTTGGCGGGCATCTTGATCGCTTCCGTAAAtcggtcg > 1:2869612/1‑71 (MQ=255) aaTAAGCGCGATGCAATCAATCATATTCGGCAGTTTGGCGGGCGTCTTGATCGCTTCCGTAAAtcggtc < 1:3733678/69‑1 (MQ=255) aaTAAGCGCGATGCAATCAATCATATTCGGCAGTTTGGCGGGCGTCTTGATCGCTTCCGTAAAtcggtc < 1:3461085/69‑1 (MQ=255) aaTAAGCGCGATGCAATCAATCATATTCGGCAGTTTGGCGGGCGTCTTGATCGCTTCCGTAAAtcggtc < 1:2255262/69‑1 (MQ=255) aaTAAGCGCGATGCAATCAATCATATTCGGCAGTTTGGCGGGCGTCTTGATCGCTTCCGTAAAtcggtc < 1:204773/69‑1 (MQ=255) aaTAAGCGCGATGCAATCAATCATATTCGGCAGTTTGGCGGGCATc > 1:754847/1‑46 (MQ=255) aaTAAGCGCGATGCAATCAATCATATTCGGCAGTTTGGCGGGCATc > 1:3488364/1‑46 (MQ=255) aaTAAGCGCGATGCAATCAATCATATTCGGCAGTTTGGCGGGCATCTTGATCGCTTCCGTAAAtcggtcgg > 1:302083/1‑71 (MQ=255) aaTAAGCGCGATGCAATCAATCATAATCGGCAGTTTGGCGGGCATCTTGATCGCTTCCGTAAAtcggtcgg < 1:3262742/71‑1 (MQ=255) aTAAGCGCGATGCAATCAATCATATTCGGCAGTTTGGCGGGCGTCTTGATCGCTTCCGTAAATCGGTcggc < 1:2062330/71‑1 (MQ=255) aGCGCGATGCAATCAATCATATTCGGCAGTTTGGCGGGCATCTTGATCGCTTCCGTAAATCGGTCggcggc > 1:2466012/1‑71 (MQ=255) cgcgATGCAATCAATCATATTCGGCAGTTTGGCGGGCATCTTGATCGCTTCCGTAAATCGGTCGGCGGCt > 1:2703665/1‑70 (MQ=255) tGCAATCAATCATATTCGGCAGTTTGGCGGGCGTCTTGATCGCTTCCGTAAATCGGTCGGCGGCTCAGGc > 1:1701523/1‑70 (MQ=255) tGCAATCAATCATATTCGGCAGTTTGGCGGGCGTCGTGATCGCTTCCGTAAATCGGTCGGCGGCTCAGGc > 1:3661754/1‑70 (MQ=255) gCAATCAATCATATTCGGCAGTTTGGCGGGCATCTTGATCGCTTCCGTAAAtcggtcgg > 1:2408049/1‑59 (MQ=255) atcaatcaTATTCGGCAGTTTGGCGGGCGTCTTGATCGCTTCCGTAAATCGGTCGGCGGCTCAGGCGAcgg > 1:1581186/1‑71 (MQ=255) atcaatcaTATTCGGCAGTTTGGCGGGCGTCTTGATCGCTTCCGTAAATCGGTCGGCGGCTCAGGCGAcgg > 1:2623943/1‑71 (MQ=255) atcaatcaTATTCGGCAGTTTGGCGGGCATCTTGATCGCTTCCGTAAATCGGTCGGCGGCTCAGGCGAcgg < 1:3580831/71‑1 (MQ=255) atcaatcaTATTCGGCAGTTTGGCGGGCATCTTGATCGCTTCCGTAAATCGGTCGGCGGCTCAGGCGAcgg < 1:1656835/71‑1 (MQ=255) tcaatcaTATTCGGCAGTTTGGCGGGCGTCTTGATc > 1:101985/1‑36 (MQ=255) tcaatcaTATTCGGCAGTTTGGCGGGCGTCTTGATc > 1:3028004/1‑36 (MQ=255) caatcaTATTCGGCAGTTTGGCGGGCGTCTTGATCGCTTCCGTAAAtcggtc > 1:3150350/1‑52 (MQ=255) caatcaTATTCGGCAGTTTGGCGGGCATCTTGATCGCTTCCGTAAATCGGTCGGCGGCTCAGGCGAcggc > 1:373310/1‑70 (MQ=255) atcaTATTCGGCAGTTTGGCGGGCGTCTTGATCGCTTCCGTAAATCGGTCGGCGGCTCAg > 1:1576353/1‑60 (MQ=255) tcaTATTCGGCAGTTTGGCGGGCGTCTTGATCGCTTCCGTAAATCGGTCGGCGGCTCAGGCGACGGCGGTc > 1:1870206/1‑71 (MQ=255) atatTCGGCAGTTTGGCGGGCATCTTGATCGCTTCCGTAAATCGGTCGGCGGCTCAGGCGACGGCGGTCGt < 1:2306461/71‑1 (MQ=255) ttCGGCAGTTTGGCGGGCGTCTTGATCGCTTCCGTAAATCGGTCGGCGGCTCAGGc < 1:1739718/56‑1 (MQ=255) tCGGCAGTTTGGCGGGCGTCTTGATAGCTTCCGTAAATCGGTCGGCGGCTCAggg > 1:2414246/1‑54 (MQ=255) cAGTTTGGCGGGCGTCTTGATCGCTTCCGTAAAtcggt > 1:228107/1‑38 (MQ=255) gTTTGGCGGGCGTCTTGATCGCTTCCGTAAATCGGTCGGCGGCTCAGGCGACGGCGGTCGTAACGCACCaa < 1:2840038/71‑1 (MQ=255) gTTTGGCGGGCGTCTTGATCGCTTCCGTAAATCGGTCGGCGGCTCAGGCGACGGCGGTCGTAACGCACCaa < 1:1616376/71‑1 (MQ=255) gTTTGGCGGGCGTCTTGATCGCTTCCGTAAATCGGTCGGCGGCTCAGGCGACGGCGGTCGTAACGCACCa > 1:1234655/1‑70 (MQ=255) tttGGCGGGCGTCTTGATCGCTTCCGTAAAtcggtcg < 1:1576267/37‑1 (MQ=255) tttGGCGGGCGTCTTGATCGCTTCCGTAAAtcggtcg < 1:2458810/37‑1 (MQ=255) tGGCGGGCGTCTTGATCGCTTCCGTAAATCGGTCGGCGGCTCAGGCGACGGCGGTCGt > 1:177710/1‑58 (MQ=255) tGGCGGGCATCTTGATCGCTTCCGTAAATCGGTCGGCGGCTCAGGCGACGGCGGTCGTAACGCACCaaaa < 1:1045719/70‑1 (MQ=255) ggcgggcgTCTTGATCGCTTCCGTAAATCGGTCGGCGGCTCAGGCGACGGCGGTCGTAACGCACCAAAAc < 1:2556944/70‑1 (MQ=255) gcgggcaTCTTGATCGCTTCCGTAAATCGGTCGGCGGCTCAGGCGACGGCGGTCGTAACGCACCAAAAcgc < 1:1603770/71‑1 (MQ=255) gcgggcaTCTTGATCGCTTCCGTAAATCGGTCGGCGGCTCAGGCGACGGCGGTCGTAACGCACCAAAAcgc < 1:196587/71‑1 (MQ=255) | CTTGCATGGAGGCGTGGGCCATGAATAAGCGCGATGCAATCAATCATATTCGGCAGTTTGGCGGGCGTCTTGATCGCTTCCGTAAATCGGTCGGCGGCTCAGGCGACGGCGGTCGTAACGCACCAAAACGC > Exported/2625083‑2625213 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |