| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 2,823,628 | G→A | 6.6% | intergenic (+373/+585) | nrfG → / ← pheU | heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfG/tRNA‑Phe |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 2,823,628 | 0 | G | A | 6.6% | 243.9 / 5.6 | 76 | intergenic (+373/+585) | nrfG/pheU | heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfG/tRNA‑Phe |
| Reads supporting (aligned to +/- strand): ref base G (29/42); new base A (3/2); total (32/44) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.44e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.61e-01 | |||||||||||
CGGGGAACGGCGCTCCATTGAGGAAGTCATTCATAATAGAAACTCATTCGAAAAGGGAATGATGCGATGATAATTGCCACAACCTATTTTTACCATCTATAGATGGGTTTATTTACATATTATTGGTGAATGC > Exported/2823563‑2823695 | cGGGGAACGGCGCTCCATTGAGGAAGTCATTCATAATAGAAACTCATTCGAAAAGGGAATGATGCgatgat < 1:1947899/71‑1 (MQ=255) ggggAACGGCGCTCCATTGAGGAAGTCATTCATAATAGAAACTCATTCGAAAAGGGAATGATGCGATGATa < 1:290874/71‑1 (MQ=255) gAACGGCGCTCCATTGAGGAAGTCATTCATAATAGAAACTCATTCGAAAAGGGAATGATGCGATGATAAtt < 1:1493537/71‑1 (MQ=255) aaCGGCGCTCCATTGAGGAAGTCATTCATAATAGAAACTCATTCGAAAAGGGAATGATGCGATGATAATTg > 1:2060586/1‑71 (MQ=255) cGGCGCTCCATTGAGGAAGTCATTCATAATAGAAACTCATTCGAAAAGGGAATGATGCGATGATAATTGc > 1:2727151/1‑70 (MQ=255) cGGCGCTCCATTGAGGAAGTCATTCATAATAGAAACTCATTCGAAAAGGGAATGATGCGAAGATAAtt > 1:2665162/1‑68 (MQ=255) ggCGCTCCATTGAGGAAGTCATTCATAATAGAAACTCATTCGAAAAGGGAATGATGCGATGATAATTGcc < 1:2886774/70‑1 (MQ=255) gcgcTCCATTGAGGAAGTCATTCATAATAGAAACTCATTCGAAAAGGGAATGATGCGATGATAATTGCca > 1:1244555/1‑70 (MQ=255) gcgcTCCATTGAGGAAGTCATTCATAATAGAAACTCATTCGAAAAGGGAATGATGCGATGATAATTGCca > 1:630508/1‑70 (MQ=255) gcgcTCCATTGAGGAAGTCATTCATAATAGAAACTCATTCGAAAAGGGAATGATGAGATGATAATTGCcac < 1:2787839/71‑1 (MQ=255) gcgcTCCATTGAGGAAGTCATTCATAATAGAAACTCATTCGAAAAGGGAATGATGAGATGATAATTGCcac < 1:775409/71‑1 (MQ=255) cgcTCCATTGAGGAAGTCATTCATAATAGAAACTCATTCGAAAAGGGAATGATGCGATGATAATTGCcaca < 1:1960893/71‑1 (MQ=255) cgcTCCATTGAGGAAGTCATTCATAATAGAAACTCATTCGAAAAGGGAATGATGCGATGATAATTGCcaca < 1:1956652/71‑1 (MQ=255) cgcTCCATTGAGGAAGTCATTCATAATAGAAACTCATTCGAAAAGGGAATGATGCGATGATAATTGCcaca < 1:3018961/71‑1 (MQ=255) cgcTCCATTGAGGAAGTCATTCATAATAGAAACTCATTCGAAAAGGGAATGATGCGATGATAATTGCcac < 1:2916560/70‑1 (MQ=255) aTTGAGGAAGTCATTCATAATAGAAACTCATTCGAAAAGGGAATGATGCGATGATAATTGCCACAACCTAt < 1:3577494/71‑1 (MQ=255) aTTGAGGAAGTCATTCATAATAGAAACTCATTCGAAAAGGGAATGATGCGATGATAATTGCCACAACCTAt < 1:2788792/71‑1 (MQ=255) ttGAGGAAGTCATTCATAATAGAAACTCATTCGAAAAGGGAATGATGCg < 1:3486026/49‑1 (MQ=255) ttGAGGAAGTCATTCATAATAGAAACTCATTCGAAAAGGGAATGATGCg < 1:2877622/49‑1 (MQ=255) ttGAGGAAGTCATTCATAATAGAAACTCATTCGAAAAGGGAATGATGCg < 1:619154/49‑1 (MQ=255) ttGAGGAAGTCATTCATAATAGAAACTCATTCGAAAAGGGAATGATGCGATGATAATTGc < 1:1867179/60‑1 (MQ=255) ttGAGGAAGTCATTCATAATAGAAACTCATTCGAAAAGGGAATGATGCGATGATAATTGc < 1:3086150/60‑1 (MQ=255) ttGAGGAAGTCATTCATAATAGAAACTCATTCGAAAAGGGAATGATGCGATGATAATTGc < 1:218860/60‑1 (MQ=255) ttGAGGAAGTCATTCATAATAGAAACTCATTCGAAAAGGGAATGATGCGATGATAATTGCCACAACCTAtt > 1:3201881/1‑71 (MQ=255) ttGAGGAAGTCATTCATAATAGAAACTCATTCGAAAAGGGAATGATGCGATGATAATTGCCACAACCTAt < 1:2704701/70‑1 (MQ=255) tGAGGAAGTCATTCATAATAGAAACTCATTCGAAAAGGGAATGATGCGATGATAATTGCCACAACCTAtt > 1:1010298/1‑70 (MQ=255) aGGAAGTCATTCATAATAGAAACTCATTCGAAAAGGGAATGATGCGATGATAATTGCCACAACCTAttttt < 1:2071530/71‑1 (MQ=255) gAAGTCATTCATAATAGAAACTCATTCGAAAAGGGAATGATGCGATGATAATTg > 1:1688219/1‑54 (MQ=255) gAAGTCATTCATAATAGAAACTCATTCGAAAAGGGAATGATGCGATGATAATTGCCACAACCTATTTTTAc > 1:2875047/1‑71 (MQ=255) aaGTCATTCATAATAGAAACTCATTCGAAAAGGGAATGATGCGATGATAATTGCCACAACCTATTTTTAcc < 1:2776127/71‑1 (MQ=255) gTCATTCATAATAGAAACTCATTCGAAAAGGGAATGATGCGATGATAATTGCCACAACCTATTTTTACCAt > 1:1481003/1‑71 (MQ=255) cattcatAATAGAAACTCATTCGAAAAGGGAATGATGCGATGATAATTGCCACAACCTAt < 1:101338/60‑1 (MQ=255) ttgcatAATAGAAACTCATTCGAAAAGGGAATGATGCAATGATAATTGCCGCAACCTATTTTTACCATCta < 1:85759/68‑1 (MQ=255) ttgcatAATAGAAACTCATTCGAAAAGGGAATGATGCAATGATAATTGCCACAACCTATTTTTACCATCta < 1:308462/68‑1 (MQ=255) attcatAATAGAAACTCATTCGAAAAGGGAATGATGCGATGATAATTGCCACAACCTa < 1:23571/58‑1 (MQ=255) attcatAATAGAAACTCATTCGAAAAGGGAATGATGCGATGATAATTGCCACAACCTa < 1:2866217/58‑1 (MQ=255) attcatAATAGAAACTCATTCGAAAAGGGAATGATGCGATGATAATTGCCACAACCTATTTTTACCATCta > 1:715736/1‑71 (MQ=255) attcatAATAGAAACTCATTCGAAAAGGGAATGATGCGATGATAATTGCCACAACCTATTTTTACCATCta < 1:3241456/71‑1 (MQ=255) ttcatAATAGAAACTCATTCGAAAAGGGACTGATGCGATGATAATTGCCACAACCTAt < 1:419251/58‑1 (MQ=255) ttcatAATAGAAACTCATTCGAAAAGGGAATGATGCGATGATAATTGCCACAACCTa < 1:946693/57‑1 (MQ=255) catAATAGAAACTCATTCGAAAAGGGAATGATGCGATGATAATTGCCACAACCTAttttt < 1:2410764/60‑1 (MQ=255) catAATAGAAACTCATTCGAAAAGGGAATGATGCGATGATAATTGCCACAACCTAttttt < 1:1759691/60‑1 (MQ=255) taataGAAACTCATTCGAAAAGGGAATGATGCGATGATAATTGCCACAACCTATTTTTACCATCTATAGAt < 1:18906/71‑1 (MQ=255) taataGAAACTCATTCGAAAAGGGAATGATGCGATGATAATTGCCACAACCTATTTTTACCATCTATAGAt < 1:679244/71‑1 (MQ=255) taataGAAACTCATTCGAAAAGGGAATGATGCGATGATAATTGCCACAACCTATTTTTACCATCTATAGAt < 1:1696265/71‑1 (MQ=255) aataGAAACTCATTCGAAAAGGGAATGATGCGATGATAATTGCCACAACCTATTTTTACCATCTATAGATg > 1:2372673/1‑71 (MQ=255) ataGAAACTCATTCGAAAAGGGAATGATGCGATGATAATTGCCACAACCTATTTTTACCATCTATAGATg < 1:186396/70‑1 (MQ=255) ataGAAACTCATTCGAAAAGGGAATGATGCAATGATa > 1:52036/1‑37 (MQ=255) ataGAAACTCATTCGAAAAGGGAATGATGCAATGATa > 1:525423/1‑37 (MQ=255) ataGAAACTCATTCGAAAAGGGAATGATGCAATGATa > 1:1661641/1‑37 (MQ=255) aGAAACTCATTCGAAAAGGGAATGATGCGATGATAATTGCCACAACCTATTTTTACCATCTATAGATGGGt > 1:862554/1‑71 (MQ=255) gAAACTCATTCGAAAAGGGAATGATGCGATGATAATTg > 1:2870427/1‑38 (MQ=255) gAAACTCATTCGAAAAGGGAATGATGCGATGATAATTGCCACAACCTATTTTTACCATCTATAGATGGGtt > 1:759764/1‑71 (MQ=255) aaaCTCATTCGAAAAGGGAATGATGCGATGATAATTGCCACAACCTATTTTTACCATCTATAGATGGGttt < 1:2102222/71‑1 (MQ=255) aaCTCATTCGAAAAGGGAATGATGCGATGATAATTGCCACAACCTATTTTTACCATCTATAGATGGGttt < 1:2097781/70‑1 (MQ=255) ttCGAAAAGGGAATGATGCGATGATAATTGCCACAACCTATTTTTACCATCTATAGATGGGTTTATTTACa > 1:704633/1‑71 (MQ=255) tCGAAAAGGGAATGATGCGATGATAATTGCCACAACCTA‑TTTTACCATCTATAGATGGGTTTATTTACata > 1:873270/1‑71 (MQ=255) cGAAAAGGGAATGATGCGATGATAATTGCCACAACCTAtt < 1:1457082/40‑1 (MQ=255) cGAAAAGGGAATGATGCGATGATAATTGCCACAACCTAtt < 1:1039232/40‑1 (MQ=255) cGAAAAGGGAATGATGCGATGATAATTGCCACAACCTAtt < 1:1472918/40‑1 (MQ=255) gAAAAGGGAATGATGCGATGATAATTGCCACAACCTATTTTTACCATCTATAGATGGGTTTATTTACatat < 1:521945/71‑1 (MQ=255) aaaaGGGAATGATGCGATGATAATTGCCACAACCTAtttt > 1:3304967/1‑40 (MQ=255) aaaaGGGAATGATGCGATGATAATTGCCACAACCTAtttt > 1:432463/1‑40 (MQ=255) aaaaGGGAATGATGCGATGATAATTGCCACAACCTAtttt > 1:3154876/1‑40 (MQ=255) aaaaGGGAATGATGCGATGATAATTGCCACAACCTAtttt > 1:1896266/1‑40 (MQ=255) aaaaGGGAATGATGCGATGATAATTGCCACAACCTATTTTTACCATCTATAGATGGGTTTATTTACatat < 1:3030842/70‑1 (MQ=255) aaGGGAATGATGCGATGATAATTGCCACAACCTATTTTTACCATCTATAGATGGGTTTATTTACAtattat > 1:1406792/1‑71 (MQ=255) aaGGGAATGATGCGATGATAATTGCCACAACCTATTTTTACCATCTATAGATGGGTTTATTTACAtattat > 1:2509866/1‑71 (MQ=255) aaGGGAATGATGCGATGATAATTGCCAAAACCTATTTTTACCATCTATAGATGGGTTTATTTACAtattat > 1:3722255/1‑71 (MQ=255) ggAATGATGCGATGATAATTGCCACAACCTATTTTTACCATCtata > 1:1468036/1‑46 (MQ=255) ggAATGATGCGATGATAATTGCCACAACCTATTTTTACCATCtata > 1:610821/1‑46 (MQ=255) ggAATGATGCGATGATAATTGCCACAACCTATTTTTACCATCTATAGAt < 1:3292087/49‑1 (MQ=255) gAATGATGCGATGATAATTGCCACAACCTATTTTTACCATCTATAGATGGGTTTATTTACATATTATTGGt < 1:2860248/71‑1 (MQ=255) aaTGATGCGATGATAATTGCCACAACCTATTTTTACCATCTATAGATGGGTTTATTTACATATTATTGGt > 1:1877847/1‑70 (MQ=255) aaTGATGCGATGATAATTGCCACAACCTATTTTTACCATCTATAGATGGGTTTATTTACATATTATTGGTg < 1:3244487/71‑1 (MQ=255) tgatgCGATGATAATTGCCACAACCTATTTTTACCATCTATAGATGGGtttattta > 1:798613/1‑56 (MQ=255) atgCGATGATAATTGCCACAACCTATTTTTACCATCTATAGATGGGTTTATTTACATATTATTGGTGAATg > 1:501453/1‑71 (MQ=255) atgCGATGATAATTGCCACAACCTATTTTTACCATCTATAGATGGGTTTATTTACATATTATTGGTGAATg < 1:2927680/71‑1 (MQ=255) tgCGATGATAATTGCCACAACCTATTTTTACCATCTATAGATGGGTTTATTTACATATTATTGGTGAATGc < 1:3144767/71‑1 (MQ=255) tgCGATGATAATTGCCACAACCTATTTTTACCATCTATAGATGGGTTTATTTACATATTATTGGTGAATGc < 1:309654/71‑1 (MQ=255) | CGGGGAACGGCGCTCCATTGAGGAAGTCATTCATAATAGAAACTCATTCGAAAAGGGAATGATGCGATGATAATTGCCACAACCTATTTTTACCATCTATAGATGGGTTTATTTACATATTATTGGTGAATGC > Exported/2823563‑2823695 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |