| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 2,887,887 | T→A | 8.2% | intergenic (+52/+27) | ytfK → / ← ytfL | conserved hypothetical protein/predicted inner membrane protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 2,887,887 | 0 | T | A | 8.2% | 132.6 / 4.3 | 49 | intergenic (+52/+27) | ytfK/ytfL | conserved hypothetical protein/predicted inner membrane protein |
| Reads supporting (aligned to +/- strand): ref base T (20/25); new base A (2/2); total (22/27) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.78e-01 | |||||||||||
AAACAGAGATGGCTTAACCAAAGTGCTATGCAGTAAAAAGTGCTATGCAGTAATAAGACGGCTCCTGATTCAGGAGCCGTTGATGTTTCTGGGGGTTACGCGACGCTTTCTTCTTTATCTTTAGCGTCAGGCAGTTT > Exported/2887819‑2887955 | aaaCAGAGATGGCTTACCCAAAGTGCTATGCAGTAAAAAGTGCTATGCAGTAATAAGACGGCTCCTGAtt > 1:3039140/1‑70 (MQ=255) aaCAGAGATGGCTTAACCAAAGTGCTATGCAGTAAAAAGTGCTATGCAGTAATAAGACGGCTCCTGATTc < 1:2808253/70‑1 (MQ=255) aCAGAGATGGCTTAACCAAAGTGCTATGCAGTAAAAAGTGCTATGCAGTAATAAGACGGCTCCTGATTc > 1:3436325/1‑69 (MQ=255) aCAGAGATGGCTTAACCAAAGTGCTATGCAGTAAAAAGTGCTATGCAGTAATAAGACGGCTCCTGATTc > 1:3209703/1‑69 (MQ=255) gagaTGGCTAAACCAAAGTGCTATGCAGTAAAAAGTGCTATGCAGTAATAAGACGGCTCCTGAATCAGGAg < 1:671163/71‑1 (MQ=255) tGGCTTAACCAAAGTGCTATGCAGTAAAAAGTGCTATGCAGTAATAAGACGGCTCCTGATTCa < 1:3492950/63‑1 (MQ=255) tGGCTTAACCAAAGTGCTATGCAGTAAAAAGTGCTATGCAGTAATAAGACGGCTCCTGATTCa < 1:2237517/63‑1 (MQ=255) ggCTTAACCAAAGTGCTATGCAGTAAAAAGTGCTATGCAGTAATAAGACGGCTCCTGATTCa < 1:3055370/62‑1 (MQ=255) gCTTAACCAAAGTGCTATGCAGTAAAAAGTGCTATGCAGTAATAAGACGGCTCCTGATTCAGGAGCCGTTg < 1:3052610/71‑1 (MQ=255) cTTAACCAAAGTGCTATGCAGTAAAAAGTGCTATGCAGTAATAAGACGGCTCCTGATTCa < 1:2899090/60‑1 (MQ=255) cTTAACCAAAGTGCTATGCAGTAAAAAGTGCTATGCAGTAATAAGACGGCTCCTGATTCAGGAGCCGTTGa < 1:2526104/71‑1 (MQ=255) cAAAGTGCTATGCAGTAAAAAGTGCTATGCAGTAATAAGACGGCTCCTGATTCAGGAGCCGTTGATGTTTc < 1:2480938/71‑1 (MQ=255) aagtgctatgcagtaaaaagtgctatgcagtaaTAAGACGGCTCCTGATTCAGGAGCCGTTGATGTTTCTg < 1:2999396/71‑1 (MQ=255) agtgctatgcagtaaaaagtgctatgcagtaaTAAGACGGCTCCTGATTCAGGAGCCGTTGATGTTTCTgg > 1:2096857/1‑71 (MQ=255) gctatgcagtaaaaagtgctatgcagtaaTAAGACGGCTCCTGATTCAGGAGCCGTTGATg > 1:2334233/1‑61 (MQ=255) ctatgcagtaaaaagtgctatgcagtaaTAAGACGGCTCCTGATTCAGGAGCCGTTGATGTTTCTg < 1:1839646/66‑1 (MQ=255) tatgcagtaaaaagtgctatgcagtaaTAAGACGGCTCCTGATTCAGGAGCCGTTGATGTTTCTgg < 1:3409448/66‑1 (MQ=255) tgcagtaaaaagtgctatgcagtaaTAAGACGGCTCCTGATTCAGGAGCCGTTGATGTTTCTGGGGGTTa < 1:1739226/70‑1 (MQ=255) gcagtaaaaagtgctatgcagtaaTAAGACGGCTCCTGATTCAGGAGCCGTTGATGTTTCTGGGGGTTAcg > 1:3695203/1‑71 (MQ=255) agtaaaaagtgctatgcagtaaTAAGACGGCTCCTGATTCAGGAGCCGTTGATGTTTCTGGGGGTTAcgc > 1:1246275/1‑70 (MQ=255) aaaaagtgctatgcagtaaTAAGACGGCTCCTGATTCAGGAGCCGTTGATGTTTCTGGGGGTTACGCGACg > 1:1135449/1‑71 (MQ=255) aaaaagtgctatgcagtaaTAAGACGGCTCCTGATTCAGGAGCCGTTGATGTTTCTGGGGGTTACGCGACg > 1:677175/1‑71 (MQ=255) aaaagtgctatgcagtaaTAAGACGGCTCCTGATTCAGGAGCCGTTGATGTTTCTGGGGGTTACGCGACg < 1:2621520/70‑1 (MQ=255) aaaagtgctatgcagtaaTAAGACGGCTCCTGATTCAGGAGCCGTTGATGTTTCTGGGGGTTACGCGACGc > 1:2718489/1‑71 (MQ=255) aagtgctatgcagtaaTAAGACGGCTCCTGATTCAGGAGCCGTTGATGTTTCTGGGGGTTACGCGACGCtt > 1:1403656/1‑71 (MQ=255) agtgctatgcagtaaTAAGACGGCTCCTGATTCAGGAGCCGTTGATGTTTCTGGGGGTTACGCGACGCt < 1:630470/69‑1 (MQ=255) tgcagtaaTAAGACGGCTCCTGATTCAGGAGCCGTTGATGTTTCTGGGGGTTACGCGACGCTTTCTtcttt < 1:867860/71‑1 (MQ=255) gcagtaaTAAGACGGCTCCTGATTCAGGAGCCGTTGATGTTTCTGGGGGTTACGCGAc > 1:1981551/1‑58 (MQ=255) gcagtaaTAAGACGGCTCCTGATTCAGGAGCCGTTGATGTTTCTGGGGGTTACGCGACGCTTTCTtcttta > 1:1842707/1‑71 (MQ=255) cagtaaTAAGACGGCTCCTGATTCAGGAGCCGTTGATGTTTCTGGGGGTTACGCGACGCTTTCTtcttta > 1:2830728/1‑70 (MQ=255) agtaaTAAGACGGCGCCTGATTCAGGAGCCGTTGATGTTTCTggg < 1:1941298/45‑1 (MQ=255) gtaaTAAGACGGCTCCTGATTCAGGAGCCGTTGATGTTTCTGGGGGTTACGCGACGCttt < 1:1909355/60‑1 (MQ=255) gtaaTAAGACGGCTCCTGATTCAGGAGCCGTTGATGTTTCTGGGGGTTACGCGACGCTTTCTtctttatct > 1:3169918/1‑71 (MQ=255) gtaaTAAGACGGCTCCTGATTCAGGAGCCGTTGATGTTTCTGGGGGTTACGCGACGCTTTCTtctttatct > 1:623067/1‑71 (MQ=255) aaGACGGCTCCTGATTCAGGAGCCGTTGATGTTTCt > 1:629546/1‑36 (MQ=255) aaGACGGCTCCTGATTCAGGAGCCGTTGATGTTTCTGGGGGTTACGCGACGCttt < 1:1913534/55‑1 (MQ=255) aGACGGCTCCTGATTCAGGAGCCGTTGATGTTTCt < 1:3543375/35‑1 (MQ=255) aGACGGCTCCTGATTCAGGAGCCGTTGATGTTTCt < 1:1161571/35‑1 (MQ=255) cGGCTCCTGATTCAGGAGCCGTTGATGTTTCTGGGGGTTACGCGACGCTTTCTTCTTTATCTTTAGCGt < 1:3293707/69‑1 (MQ=255) cGGCTCCTGATTCAGGAGCCGTTGATGTTTCTGGGGGTTACGCGACGCTTTCTTCTTTATCTTTAGCGt > 1:1978962/1‑69 (MQ=255) cGGCTCCTGATTCAGGAGCCGTTGATGTTTCTGGGGGTTACGCGACGCTTTCTTCTTTATCTTTAGCGt > 1:1201682/1‑69 (MQ=255) cGGCTCCTGATTCAGGAGCCGTTGATGTTTCTGGGGGTTACGCGACGCTTTCTTCTTTATCTTTAGCGTc < 1:1255849/70‑1 (MQ=255) ggCTCCTGATTCAGGAGCCGTTGATGTTTCTGGGGGTTACGCGACGCTTTCTTCTTTATCTTTAGCg < 1:960345/67‑1 (MQ=255) ggCTCCTGAATCAGGAGCCGTTGATGTTTCTGGGGGTTACGCGACGCTTTCTtctttatcttta > 1:1537436/1‑64 (MQ=255) ggCTCCTGAATCAGGAGCCGTTGATGTTTCTGGGGGTTACGCGACGCTTTCTtctttatcttta > 1:1336525/1‑64 (MQ=255) ggCTCCTGAATCAGGAGCCGTTGATGTTTCTGGGGGTTACGCGACGCTTTCTTCTTTATCTTTAg < 1:2442913/65‑1 (MQ=255) cTCCTGATTCAGGAGCCGTTGATGTTTCTGGGGGTTACGCGACGCTTTCTTCTTTATCTTTAGCGTCAGGc < 1:430154/71‑1 (MQ=255) tCCTGATTCAGGAGCCGTTGATGTTTCTGGGGGTTACGCGACGCTTTCTTCTTTATCTTTAGCGTCAGGc < 1:3051359/70‑1 (MQ=255) ccTGATTCAGGAGCCGTTGATGTTTCTGGGGGTTACGCGACGCTTTCTTCTTTATCTTTAGCGt > 1:1856684/1‑64 (MQ=255) gATTCAGGAGCCGTTGATGTTTCTGGGGGTTACGCGACGCTTTCTTCTTTATCTTTAGCGTCAGGCAGttt > 1:976555/1‑71 (MQ=255) | AAACAGAGATGGCTTAACCAAAGTGCTATGCAGTAAAAAGTGCTATGCAGTAATAAGACGGCTCCTGATTCAGGAGCCGTTGATGTTTCTGGGGGTTACGCGACGCTTTCTTCTTTATCTTTAGCGTCAGGCAGTTT > Exported/2887819‑2887955 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |