| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 2,954,718 | A→G | 8.0% | R82G (AGG→GGG) | rimI → | acetylase for 30S ribosomal subunit protein S18 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 2,954,718 | 0 | A | G | 8.0% | 215.5 / 7.9 | 75 | R82G (AGG→GGG) | rimI | acetylase for 30S ribosomal subunit protein S18 |
| Reads supporting (aligned to +/- strand): ref base A (33/36); new base G (3/3); total (36/39) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GTGGTGCTGGATGAAGCTACATTGTTCAATATTGCGGTCGATCCTGACTATCAGCGTCAGGGATTGGGAAGGGCGCTGCTGGAACATCTGATCGACGAACTGGAAAAACGCGGCGTGGCGACACTATGGCTGGAAGTCCG > Exported/2954649‑2954788 | gtggtgCTGGATGAAGCTACATTGTTCAATATTGCGGTCGATCCTGACTATCAGCGTCAGGGATTGGGAAg > 1:2226013/1‑71 (MQ=255) ggtgCTGGATGAAGCTACATTGTTCAATATTGCGGTCGATCCTGACTATCAGCGTCAGGGATTGGGAAggg > 1:2397030/1‑71 (MQ=255) cTGGATGAAGCTACATTGTTCAATATTGCGGTCGATCCTGACTATCAGCGTCAGGGATTGGGAAGGgcgc < 1:376636/70‑1 (MQ=255) aTGAAGCTACATTGTTCAATATTGCGGTCGATCCTGACTATCAGCGTCAGGGATTGGGAAGGGCGctgctg < 1:440145/71‑1 (MQ=255) aTGAAGCTACATTGTTCAATATTGCGGTCGATCCTGACTATCAGCGTCAGGGATTGGGAAGGGCGctgctg < 1:2760762/71‑1 (MQ=255) tGAAGCTACATTGTTCAATATTGCGGTCGATCCTGACTATCAGCGTCAGGGATTGGGAAGGGCGCTGCTgg < 1:2894909/71‑1 (MQ=255) aaGCTACATTGTTCAATATTGCGGTCGATCCTGACTATCAGCGTCAGGGATTGGGAAGGGCGCTGCTGGa < 1:873649/70‑1 (MQ=255) aaGCTACATTGTTCAATATTGCGGTCGATCCTGACTATCAGCGTCAGGGATTGGGAAGGGCGCTGCTGGa < 1:1259515/70‑1 (MQ=255) aaGCTACATTGTTCAATATTGCGGTCGATCCTGACTATCAGCGTCAGGGATTGGGAAGGGCGCTGCTGGa < 1:2944882/70‑1 (MQ=255) aGCTACATTGTTCAATATTGCGGTCGATCCTGACTATCAGCGTCAGGGATTGGGAAGGGCGCTGCTGGaa > 1:1054993/1‑70 (MQ=255) aGCTACATTGTTCAATATTGCGGTCGATCCTGACTATCAGCGTCAGGGATTGGGAAGGGCGCTGCTGGaa > 1:395847/1‑70 (MQ=255) cATTGTTCAATATTGCGGTCGATCCTGACTATCAGCGTCAGGGATTGGGAGGGGCGCTGCTGGAACATCt > 1:204416/1‑70 (MQ=255) ttGTTCAATATTGCGGTCGATCCTGACTATCAGCGTCAGGGATTGGGAAg > 1:851869/1‑50 (MQ=255) tGTTCAATATTGCGGTCGATCCTGACTATCAGCGTCAGGGATTGGGAAGGGCGCTGCTGGAAc > 1:2744173/1‑63 (MQ=255) tGTTCAATATTGCGGTCGATCCTGACTATCAGCGTCAGGGATTGGGAAGGGCGCTGCTGGAACATCTGATc > 1:704332/1‑71 (MQ=255) tGTTCAATATTGCGGTCGATCCTGACTATCAGCGTCAGGGATTGGGAAGGGCGCTGCTGGAACATCTGATc > 1:2038706/1‑71 (MQ=255) gTTCAATATTGCGGTCGATCCTGACTATCAGCGTCAGGGATTGGGAAggg > 1:1877464/1‑50 (MQ=255) gTTCAATATTGCGGTCGATCCTGACTATCAGCGTCAGGGATTGGGAAGGGCGCTGCTGGAACATCTGATc < 1:912695/70‑1 (MQ=255) gTTCAATATTGCGGTCGATCCTGACTATCAGCGTCAGGGATTGGGAAGGGCGCTGCTGGAACATCTGATc < 1:1291330/70‑1 (MQ=255) gTTCAATATTGCGGTCGATCCTGACTATCAGCGTCAGGGATTGGGAAGGGCGCTGCTGGAACATCTGATc > 1:2879700/1‑70 (MQ=255) gTTCAATATTGCGGTCGATCCTGACTATCAGCGTCAGGGATTGGGAAGGGCGCTGCTGGAACATCTGATc > 1:522525/1‑70 (MQ=255) atatTGCGGTCGATCCTGACTATCAGCGTCAGGGATTGGGAAGGGCGCTGCTGGAACATCTGATCGACGaa < 1:3008268/71‑1 (MQ=255) atatTGCGGTCGATCCTGACTATCAGCGTCAGGGATTGGGAAGGGCGCTGCTGGAACATCTGATCGACGaa > 1:1364704/1‑71 (MQ=255) atatTGCGGTCGATCCTGACTATCAGCGTCAGGGATTGGGAAGGGCGCTGCTGGAACATCTGATCGACGaa > 1:2864810/1‑71 (MQ=255) atatTGCGGTCGATCCTGACTATCAGCGTCAGGGATTGGGAAGGGCGCTGCTGGAACATCTGATCGACGaa < 1:3012529/71‑1 (MQ=255) atatTGCGGTCGATCCTGACTATCAGCGTCAGGGATTGGGAAGGGCGCTGCTGGAACATCTGATCGACGaa > 1:3091835/1‑71 (MQ=255) tatTGCGGTCGATCCTGACTATCAGCGTCAGGGATTGGGaa > 1:3662603/1‑41 (MQ=255) tatTGCGGTCGATCCTGACTATCAGCGTCAGGGATTGGGAAGGgcg > 1:143714/1‑46 (MQ=255) tatTGCGGTCGATCCTGACTATCAGCGTCAGGGATTGGGAAGGgcg > 1:2222189/1‑46 (MQ=255) tatTGCGGTCGATCCTGACTATCAGCGTCAGGGATTGGGAAGGGCgct > 1:1248981/1‑48 (MQ=255) tatTGCGGTCGATCCTGACTATCAGCGTCAGGGATTGGGAAGGGCGCTGCTGGAACATCTGATCGACGAAc > 1:2562847/1‑71 (MQ=255) tatTGCGGTCGATCCTGACTATCAGCGTCAGGGATTGGGAAGGGCGCTGCTGGAACATCTGATCGACGAAc > 1:1565433/1‑71 (MQ=255) ttGCGGTCGATCCTGACTATCAGCGTCAGGGATTGGGAGGGGCGCTGCTGGAACATCTGATCGACGAACt < 1:113032/70‑1 (MQ=255) gCGGTCGATCCTGACTATCAGCGTCAGGGATTGGGAAGGGCGCTGCTGGAACATCTGATCGACGAACTgg < 1:3226459/70‑1 (MQ=255) cGGTCGATCCTGACTATCAGCGTCAGGGATTGGGAAGGGCgctgct < 1:3674397/46‑1 (MQ=255) cGGTCGATCCTGACTATCAGCGTCAGGGATTGGGAAGGGCgctgct < 1:3383353/46‑1 (MQ=255) cGGTCGATCCTGACTATCAGCGTCAGGGATTGGGAAGGGCGCTGCTGGAACATCTGATCGACGAACTg < 1:3695702/68‑1 (MQ=255) cGGTCGATCCTGACTATCAGCGTCAGGGATTGGGAAGGGCGCTGCTGGAACATCTGATCGACGAACTg < 1:339060/68‑1 (MQ=255) ggTCGATCCTGACTATCAGCGTCAGGGATTGGGAAGGGCGCTGCTGGAACATCTGATCGACGAACTGGaa > 1:231843/1‑70 (MQ=255) aTCCTGACTATCAGCGTCAGGGATTGGGAAGGGCGCTGCTGGAACATCTGATCGACGAACTGGAAAAAcgc < 1:52698/71‑1 (MQ=255) tCCTGACTATCAGCGTCAGGGATTGGGAAGGGCGCTGCTGGAACATCTGATCGACGAACTGGaa > 1:1381884/1‑64 (MQ=255) tCCTGACTATCAGCGTCAGGGATTGGGAAGGGCGCTGCTGGAACATCTGATCGACGAACTGGaa > 1:176536/1‑64 (MQ=255) tCCTGACTATCAGCGTCAGGGATTGGGAAGGGCGCTGCTGGAACATCTGATCGACGAACTGGaa > 1:610993/1‑64 (MQ=255) tCCTGACTATCAGCGTCAGGGATTGGGAAGGGCGCTGCTGGAACATCTGATCGACGAACTGGaa > 1:2262600/1‑64 (MQ=255) tCCTGACTATCAGCGTCAGGGATTGGGAAGGGCGCTGCTGGAACATCTGATCGACGAACTGGAAAAAcgcg < 1:1036324/71‑1 (MQ=255) ccTGACTATCAGCGTCAGGGATTGGGAAGGGCGCTGCTGGAACATCTGATCGACGAACTGGAAAAAcgc > 1:557832/1‑69 (MQ=255) ccTGACTATCAGCGTCAGGGATTGGGAAGGGCGCTGCTGGAACATCTGATCGACGAACTGGAAAAACgcgg > 1:2382004/1‑71 (MQ=255) cTGACTATCAGCGTCAGGGATTGGGAAGGGCGCTGCTgg < 1:1220409/39‑1 (MQ=255) cTGACTATCAGCGTCAGGGATTGGGAAGGGCGCTGCTGGAACATCTGATCGACGAACTggg < 1:985281/61‑2 (MQ=255) cTGACTATCAGCGTCAGGGATTGGGAAGGGCGCTGCTGGAACATCTGATCGACGAACTGGAAAAACgcggc > 1:2728399/1‑71 (MQ=255) cTATCAGCGTCAGGGATTGGGAAGGGCGCTGCTGGAACATCTGATCGACGAACTGGAAAAACGCGGCGTgg > 1:1725984/1‑71 (MQ=255) cAGCGTCAGGGATTGGGAGGGGCGCTGCTGGAACATCTGATCGACGAACTGGAAAAACGCGGCGTGGCGa > 1:1412188/1‑70 (MQ=255) cAGCGTCAGGGATTGGGAAGGGCGCTGCTGGAACATCTGATCGACGAACTGGAAAAACGCGGCGt < 1:1702783/65‑1 (MQ=255) cAGCGTCAGGGATTGGGAAGGGCGCTGCTGGAACATCTGATCGACGAACTGGAAAAACGCGGCGt < 1:449068/65‑1 (MQ=255) gCGTCAGGGATTGGGAAGGGCGCTGCTGGAACATCTGATCGACGAACTGGAAAAACGCGGCGTgg > 1:2140271/1‑65 (MQ=255) tCAGGGATTGGGAAGGGCGCTGCTGGAACATCTGATCGACGAACTgg < 1:2547176/47‑1 (MQ=255) aGGGATTGGGAGGGGCGCTGCTGGAACATCTGATCGACGAACTGGAAAAACGCGGCGTGGCGACACTATg > 1:1783427/1‑70 (MQ=255) gggATTGGGAAGGGCGCTGCTGGAACATCTGATCGACGAACTGGAAAAACGCGGCGTGGCGACACTATGGc > 1:328296/1‑71 (MQ=255) gggATTGGGAAGGGCGCTGCTGGAACATCTGATCGACGAACTGGAAAAACGCGGCGTGGCGACACTATGGc > 1:1413630/1‑71 (MQ=255) ggATTGGGAAGGGCGCTGCTGGAACATCTGATCGACGAACTGGAAAAACGCGGCGTGGCGACACTATGGCt < 1:1060270/71‑1 (MQ=255) ggATTGGGAAGGGCGCTGCTGGAACATCTGATCGACGAACTGGAAAAACGCGGCGTGGCGACACTATGGCt < 1:2839584/71‑1 (MQ=255) gATTGGGAGGGGCGCTGCTGGAACATCTGATCGACGAACTGGAAAAACGCGGCGTGGCGACACTATGGCTg < 1:277830/71‑1 (MQ=255) gATTGGGAGGGGCGCTGCTGGAACATCTGATCGACGAACTGGAAAAACGCGGCGTGGCGACACTATGGCTg < 1:3156525/71‑1 (MQ=255) gATTGGGAAGGGCGCTGCTGGAACATCTGATCGACGAACTGGAAAAACGCGGCGTGGCGACACTATGGCTg < 1:1172187/71‑1 (MQ=255) aTTGGGAAGGGCGCTGCTGGAACATCTGATCGACGAACTGGAAAAACGCGGCGTGGc < 1:2531812/57‑1 (MQ=255) aTTGGGAAGGGCGCTGCTGGAACATCTGATCGACGAACTGGAAAAACGCGGCGTGGCGACACTATGGCTg > 1:3044156/1‑70 (MQ=255) ttGGGAAGGGCGCTGCTTGAACATCTGATCGACGAACTGGAAAAACGCGGCGt < 1:3305138/53‑1 (MQ=255) ttGGGAAGGGCGCTGCTGGAACATCTGATCGACGAACTGGaaaaa < 1:2455001/45‑1 (MQ=255) ttGGGAAGGGCGCTGCTGGAACATCTGATCGACGAACTGGaaaaa < 1:1934726/45‑1 (MQ=255) ttGGGAAGGGCGCTGCTGGAACATCTGATCGACGAACTGGAAAAACgcggc < 1:328177/51‑1 (MQ=255) ttGGGAAGGGCGCTGCTGGAACATCTGATCGACGAACTGGAAAAACgcggc < 1:323679/51‑1 (MQ=255) ttGGGAAGGGCGCTGCTGGAACATCTGATCGACGAACTGGAAAAACGCGGCGt < 1:3392450/53‑1 (MQ=255) tGGGAAGGGCGCTGCTGGAACATCTGATCGACGAACTGGaaaaa < 1:2480627/44‑1 (MQ=255) tGGGAAGGGCGCTGCTGGAACATCTGATCGACGAACTGGaaaaa < 1:2773796/44‑1 (MQ=255) gggAAGGGCGCTGCTGGAACATCTGATCGACGAACTGGAAAAACGCGGCGt > 1:2036295/1‑51 (MQ=255) gAAGGGCGCTGCTGGAACATCTGATCGACGAACTGGAAAAACGCGGCGTGGCGacac < 1:3363035/57‑1 (MQ=255) aGGGCGCTGCTGGAACATCTGATCGACGAACTGGAAAAACGCGGCGTGGCGACACTATGGCTGGAAGTCCg < 1:2654869/71‑1 (MQ=255) aGGGCGCTGCTGGAACATCTGATCGACGAACTGGAAAAACGCGGCGTGGCGACACTATGGCTGGAAGTCCg > 1:2215467/1‑71 (MQ=255) | GTGGTGCTGGATGAAGCTACATTGTTCAATATTGCGGTCGATCCTGACTATCAGCGTCAGGGATTGGGAAGGGCGCTGCTGGAACATCTGATCGACGAACTGGAAAAACGCGGCGTGGCGACACTATGGCTGGAAGTCCG > Exported/2954649‑2954788 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |