| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 450,341 | C→G | 5.4% | intergenic (‑4/+19) | kdpB ← / ← kdpA | potassium translocating ATPase, subunit B/potassium translocating ATPase, subunit A |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 450,341 | 0 | C | G | 5.4% | 234.0 / 2.0 | 74 | intergenic (‑4/+19) | kdpB/kdpA | potassium translocating ATPase, subunit B/potassium translocating ATPase, subunit A |
| Reads supporting (aligned to +/- strand): ref base C (33/37); new base G (2/2); total (35/39) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.62e-01 | |||||||||||
CACCGCTTCTTTCAGCGCCTGAACGACAAGTGTTGGTTCGAATAGCGCCAGTTGTTTACGACTCATATTCAGTGCTCACTCAATATCATCAGGAGAGATATTCCGCCACCGGACCAAGCGCCAGGGCAGGGATAAAGGT > Exported/450272‑450410 | cACCGCTTCTTTCAGCGCCTGAACGACAAGTGTTGGTTCGAATAGCGCCAGTTGTTTACGACTCATATTc < 1:655153/70‑1 (MQ=255) cttcttTCAGCGCCTGAACGACAAGTGTTGGTTCGAATAGCGCCAGTTGTTTACGACTCATATTCAGTGct > 1:2381285/1‑71 (MQ=255) cttTCAGCGCCTGAACGACAAGTGTTGGTTCGAATAGGGCCAGTTGTTTACGACTCATATTCAGTGctca < 1:1872063/70‑1 (MQ=255) cttTCAGCGCCTGAACGACAAGTGTTGGTTCGAATAGCGCCAGTTGTTTACGACTCATATTCAGTGctca < 1:2094701/70‑1 (MQ=255) tCAGCGCCTGAACTACAAGTGTTGGTTCGAATAGCGCCAGTTGTTTACGACTCATATTCAGTGctcac < 1:1643406/68‑1 (MQ=255) tCAGCGCCTGAACGACAAGTGTTGGTTCGAATAGCGCCAGTTGTTTACGACTCATATTCAGTGctcac < 1:3280637/68‑1 (MQ=255) aGCGCCTGAACGACAAGTGTTGGTTCGAATAGCGCCAGTTGTTTACGACTCATATTCAGTGCTCACTCaa > 1:171247/1‑70 (MQ=255) gcgcCTGAACGACAAGTGTTGGTTCGAATAGCGCCAGTTGTTTACGACTCATATTGAGTGagcactga < 1:3289959/68‑3 (MQ=255) gcgcCTGAACGACAAGTGTTGGTTCGAATAGCGCCAGTTGTTTACGACTCATATTGAGTGagcactga < 1:2246258/68‑3 (MQ=255) gcCTGAACGACAAGTGTTGGTTCGAATAGCGCCAGTTGTTTACGACTCATATTGAGTGAGCACTGAat > 1:597038/1‑68 (MQ=38) gcCTGAACGACAAGTGTTGGTTCGAATAGCGCCAGTTGTTTACGACTCATATTCAGTGCTCACTCAatat > 1:365797/1‑70 (MQ=255) gcCTGAACGACAAGTGTTGGTTCGAATAGCGCCAGATGTTTACGACTCATATAGAGTGAGCACTGAat > 1:2409394/1‑68 (MQ=255) cTGAACGACAAGTGTTGGTTCGAATAGCGCCAGTTGTTTACGACTCATATTCAGTGCTCACTCAATatcat < 1:2564911/71‑1 (MQ=255) tGAACGACAAGTGTTGGTTCGAATAGCGCCAGTTGTTTACGACTCATATTCAGTGCTCACTCAATatcat > 1:716749/1‑70 (MQ=255) aaCGACAAGTGTTTGTTCGAATAGCGCCAGTTGTTTACGACTCATATTCAGTGCTCACTCAATatcatc < 1:1009670/69‑1 (MQ=255) aaCGACAAGTGTTGGTTCGAATAGCGCCAGTTGTTTACGACTCATATTCAg > 1:1532420/1‑51 (MQ=255) aaCGACAAGTGTTGGTTCGAATAGCGCCAGTTGTTTACGACTCATATTCAGTGCTCACTCAATATCATCAg > 1:853560/1‑71 (MQ=255) aaCGACAAGTGTTGGTTCGAATAGCGCCAGTTGTTTACGACTCATATTCAGTGCTCACTCAATATCATCAg < 1:238476/71‑1 (MQ=255) aaGTGTTGGTTCGAATAGCGCCAGTTGTTTACGACTCATATTCAGTGCTCACTCAATATCATCAGgagaga < 1:3277218/71‑1 (MQ=255) aaGTGTTGGTTCGAATAGCGCCAGTTGTTTACGACTCATATTCAGTGCTCACTCAATATCATCAGga > 1:2513470/1‑67 (MQ=255) gtgtTGGTTCGAATAGCGCCAGTTGTTTACGACTCATATTCAGTGCTCACTCAATATCATCAgg > 1:2252634/1‑64 (MQ=255) gtgtTGGTTCGAATAGCGCCAGTTGTTTACGACTCATATTCAGTGCTCACTCAATATCATCAGGAGAGata > 1:3479911/1‑71 (MQ=255) ttGGTTCGAATAGCGCCAGTTGTTTACGACTCATATTCAGTGCTCACTCAATATCATCAGGAGAGATAtt < 1:2120346/70‑1 (MQ=255) ttGGTTCGAATAGCGCCAGTTGTTTACGACTCATATTCAGTGCTCACTCAATATCATCAGGAGAGATATTc > 1:2409131/1‑71 (MQ=255) tGGTTCGAATAGCGCCAGTTGTTTACGACTCATATTCAGTGctcac < 1:2906608/46‑1 (MQ=255) tGGTTCGAATAGCGCCAGTTGTTTACGACTCATATTCAGTGctcac < 1:1162873/46‑1 (MQ=255) tGGTTCGAATAGCGCCAGTTGTTTACGACTCATATTCAGTGctcac < 1:856841/46‑1 (MQ=255) tGGTTCGAATAGCGCCAGTTGTTTACGACTCATATTCAGTGctcac < 1:1195336/46‑1 (MQ=255) ggTTCGAATAGCGCCAGTTGTTTACGACTCATATTCAg > 1:1277007/1‑38 (MQ=255) ggTTCGAATAGCGCCAGTTGTTTACGACTCATATTCAg > 1:813561/1‑38 (MQ=255) ggTTCGAATAGCGCCAGTTGTTTACGACTCATATTCAg > 1:936223/1‑38 (MQ=255) ggTTCGAATAGCGCCAGTTGTTTACGACTCATATTCAg > 1:2011643/1‑38 (MQ=255) gTTCGAATAGCGCCAGTTGTTTACGACTCATATTCAGTGCTCACTCAATATCATCAGGAGAGat < 1:2277185/64‑1 (MQ=255) gTTCGAATAGCGCCAGTTGTTTACGACTCATATTCAGTGCTCACTCAATATCATCAGGAGAGATATTCCGc < 1:3220880/71‑1 (MQ=255) gTTCGAATAGCGCCAGTTGTTTACGACTCATATTCAGTGCTCACTCAATATCATCAGGAGAGATATTCCGc < 1:2041498/71‑1 (MQ=255) gTTCGAATAGCGCCAGTTGTTTACGACTCATATTCAGTGCTCACTCAATATCATCAGGAGAGATATTCCGc < 1:492694/71‑1 (MQ=255) ttCGAATAGCGCCAGTTGTTTACGACTCATATTCAGTGctcact > 1:524635/1‑44 (MQ=255) ttCGAATAGCGCCAGTTGTTTACGACTCATATTCAGTGCTCACTCAATATCATCAGGAGAGATATTCCGcc < 1:1619492/71‑1 (MQ=255) ttCGAATAGCGCCAGTTGTTTACGACTCATATTCAGTGCTCACTCAATATCATCAGGAGAGATATTCCGcc < 1:2225873/71‑1 (MQ=255) cGAATAGCGCCAGTTGTTTACGACTCATATTCAGTg > 1:2410931/1‑36 (MQ=255) aGCGCCAGTTGTTTACGACTCATATTCAGTGCTCACTCAATATCATCAGga < 1:8895/51‑1 (MQ=255) aGTTGTTTACGACTCATATTCAGTGCTCACTCAATATCATCAGGAGAGATATTCCGCCACCGGACCAAgcg > 1:3729623/1‑71 (MQ=255) ttgttTACGACTCATATTCAGTTCTCACTCAATATCATCAGGAGAGATATTCCGCCACCGGACCaa < 1:275120/66‑1 (MQ=255) ttgttTACGACTCATATTCAGTGCTCACTCAATATCATCAGGAGAGATATTCCGCCACCGGACCaa < 1:1689561/66‑1 (MQ=255) ttgttTACGACTCATATTCAGTGCTCACTCAATATCATCAGGAGAGATATTCCGCCACCGGACCaa < 1:3684108/66‑1 (MQ=255) ttgttTACGACTCATATTCAGTGCTCACTCAATATCATCAGGAGAGATATTCCGCCACCGGACCaa < 1:3322091/66‑1 (MQ=255) ttgttTACGACTCATATTCAGTGCTCACTCAATATCATCAGGAGAGATATTCCGCCACCGGACCAAGCGcc < 1:1865134/71‑1 (MQ=255) tgttTACGACTCATATTCAGTGCTCACTCAATATCATCAg < 1:1287895/40‑1 (MQ=255) gttAACGACTCATATTCAGTCCTCAATCAATATCATCAGTAGAGATATTCCGcc > 1:1770779/1‑54 (MQ=255) tttACGACTCATATTCAGTGCTCACTCAATATCATCAg < 1:2180387/38‑1 (MQ=255) tttACGACTCATATTCAGTGCTCACTCAATATCATCAGGAGAGATATTCCGcc < 1:3141704/53‑1 (MQ=255) tttACGACTCATATTCAGTGCTCACTCAATATCATCAGGAGAGATATTCCGCCACCGGACCAAGCGCcagg < 1:1628023/71‑1 (MQ=255) ttACGACTCATATTCAGTGCTCACTCAATATCATCAGgagaga > 1:2630190/1‑43 (MQ=255) ttACGACTCATATTCAGTGCTCACTCAATATCATCAGgagaga > 1:2322055/1‑43 (MQ=255) ttACGACTCATATTCAGTGCTCACTCAATATCATCAGgagaga > 1:3488585/1‑43 (MQ=255) ttACGACTCATATTCAGTGCTCACTCAATATCATCAGGAGAGATATTCCGCCACCGGAcc < 1:2261609/60‑1 (MQ=255) tACGACTCATATTCAGTGCTCACTCAATATCATCAGga > 1:261542/1‑38 (MQ=255) tACGACTCATATTCAGTGCTCACTCAATATCATCAGga > 1:1378517/1‑38 (MQ=255) tACGACTCATATTCAGTGCTCACTCAATATCATCAGga > 1:3092387/1‑38 (MQ=255) tACGACTCATATTCAGTGCTCACTCAATATCATCAGga > 1:1484659/1‑38 (MQ=255) tACGACTCATATTCAGTGCTCACTCAATATCATCAGga > 1:1680054/1‑38 (MQ=255) tACGACTCATATTCAGTGCTCACTCAATATCATCAGGAGAGATATTCCGc < 1:384319/50‑1 (MQ=255) tACGACTCATATTCAGTGCTCACTCAATATCATCAGGAGAGATATTCCGCCAc > 1:3105376/1‑53 (MQ=255) tACGACTCATATTCAGTGCTCACTCAATATCATCAGGAGAGATATTCCGCCAc > 1:637096/1‑53 (MQ=255) aCGACTCATATTCAGTGCTCACTCAATATCATCAGGAGAGATATTCCGc < 1:1551154/49‑1 (MQ=255) aCGACTCATATTCAGTGCTCACTCAATATCATCAGGAGAGATATTCCGCCACCGGACCAAGCGCcagggc < 1:597946/70‑1 (MQ=255) atatTCAGTGCTCACTCAATATCATCAGGAGAGATATTCCGCCACCGGACCAAGCGCcagg < 1:1145357/61‑1 (MQ=255) atatTCAGTGCTCACTCAATATCATCAGGAGAGATATTCCGCCACCGGACCAAGCGCcagg < 1:192800/61‑1 (MQ=255) atatTCAGTGCTCACTCAATATCATCAGGAGAGATATTCCGCCACCGGACCAAGCGCCAGGGCAGGGATaa < 1:830769/71‑1 (MQ=255) atatTCAGTGCTCACTCAATATCATCAGGAGAGATATTCCGCCACCGGACCAAGCGCCAGGGCAGGGATa < 1:3152882/70‑1 (MQ=255) tatTCAGTGCTCACTCAATATCATCAGGAGAGATATTCCGCCACCGGACCAAGCGCCAGGGCAGGGATa > 1:620542/1‑69 (MQ=255) tatTCAGTGCTCACTCAATATCATCAGGAGAGATATTCCGCCACCGGACCAAGCGCCAGGGCAGGGATa > 1:1805540/1‑69 (MQ=255) atTCAGTGCTCACTCAATATCATCAGTAGAGATATTCCGCCACCGGACCAAgc > 1:1988743/1‑53 (MQ=255) atTCAGTGCTCACTCAATATCATCAGGAGAGATATTCCGCCACCGGACCAAgc > 1:959177/1‑53 (MQ=255) tCAGTGCTCACTCAATATCATCAGGAGAGATATTCCGCCACCGGACCAAGCGCCAGGGCAGGGATAAAGGt > 1:171741/1‑71 (MQ=255) cAGTGCTCACTCAATATCATCAGGAGAGATATTCCGCCACCGGACCAAGCGCCAGGGCAGGGATAAAGGt < 1:963696/70‑1 (MQ=255) | CACCGCTTCTTTCAGCGCCTGAACGACAAGTGTTGGTTCGAATAGCGCCAGTTGTTTACGACTCATATTCAGTGCTCACTCAATATCATCAGGAGAGATATTCCGCCACCGGACCAAGCGCCAGGGCAGGGATAAAGGT > Exported/450272‑450410 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |