New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AP009048 20390 =NA (NA)9 (0.170) 3/94 NT NA coding (119/276 nt) insA IS1 repressor protein InsA
?AP009048 20407 = NA (NA)coding (102/276 nt) insA IS1 repressor protein InsA

GGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AP009048/20463‑20390
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcaGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAA  >  AP009048/20407‑20476
                                                                                                                                                
GGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATG                                                                           >  1:4678859/1‑71
GGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATG                                                                           <  1:676901/71‑1
GGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATG                                                                           <  1:2039132/71‑1
 GGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGG                                                                          <  1:278587/71‑1
  GGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGC                                                                         <  1:1189439/71‑1
  GGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGC                                                                         <  1:3425426/71‑1
  GGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGC                                                                         <  1:1916658/71‑1
  GGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGC                                                                         <  1:2055610/71‑1
  GGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGG                                                                          >  1:79837/1‑70
      GTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGC                                                                         >  1:582534/1‑67
             ACGGCAAAAGCACCGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATG                                                                           >  1:3292310/1‑58
                 CAAAAGCACCGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGC                                                                         <  1:2761496/56‑1
                  AAAAGCACCGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGG                                                                          <  1:4039620/54‑1
                   AAAGCACCGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGC                                                                         <  1:2390851/54‑1
                    AAGCACCGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGC                                                                         >  1:4000232/1‑53
                           GCCGGACATCAGCGCTATCTCTGCTCTCACTACCGTAAAACATGGC                                                                         <  1:3257234/46‑1
                             CGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGC                                                                         <  1:1741952/44‑1
                              GGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATG                                                                           >  1:1623486/1‑41
                                  ATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGG                                                                          <  1:1971005/38‑1
                                  ATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGG                                                                          <  1:1968904/38‑1
                                    CAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGC                                                                         <  1:3684613/37‑1
                                    CAGCGCTATCTCTGCTCTCACTGCCGTAAAACATG                                                                           >  1:4596199/1‑35
                                     AGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGCA                                                                        >  1:2004969/1‑37
                                      GCGCTATCTCTGCTCTCACTGCCGTAAATCATGGCA                                                                        <  1:368830/36‑1
                                                      CACTGCCGTAAAACATGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCT                                    <  1:3523564/56‑1
                                                       ctTGCCGTAAAACATGGCAAGGAGAGCAGAGATAGCGCTGATGTCCGGCAGTGCTTTTGCCGTTACGCAC                     >  1:2767940/3‑70
                                                       ctTGCCGTAAAACATGGCAAGGAGAGCAGAGATAGCGCTGATGTCCGGCAGTGCTTTTGACGTTACGCAC                     >  1:4776196/3‑70
                                                       ACTGCCGTAAAACATGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCAGTGCTTTTGCCGTTACGCA                      >  1:4378742/1‑69
                                                         TGCCGTAAAACATGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTT                                  >  1:2382449/1‑55
                                                         TGCCGTAAAACATGGCAGTGAGAGCAGAGATAGCGC                                                     >  1:1068716/1‑36
                                                         TGCCGTAAAACATGGCAGTGAGAGCAGAGATAGCG                                                      >  1:2772370/1‑35
                                                          GCCGTAAAACATGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACC                 >  1:3122145/1‑71
                                                          GCCGTAAAACATGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACC                 >  1:1247002/1‑71
                                                                      GGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCT     <  1:2015525/71‑1
                                                                      GGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTA        <  1:2856732/68‑1
                                                                      GGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGC                                     <  1:3486028/39‑1
                                                                       GCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTG    <  1:254709/71‑1
                                                                       GCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTG    <  1:4941226/71‑1
                                                                       GCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTG                                      <  1:931942/37‑1
                                                                        CAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCA           <  1:544591/63‑1
                                                                        CAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCA                   <  1:146976/55‑1
                                                                         AGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAA  <  1:2792018/71‑1
                                                                         AGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAA  <  1:2680795/71‑1
                                                                         AGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAA  <  1:727050/71‑1
                                                                         AGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAA  <  1:2480199/71‑1
                                                                                                                                                
GGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AP009048/20463‑20390
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcaGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAA  >  AP009048/20407‑20476

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.