New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AP009048	154410 =	59 (1.050)	4 (0.070)	3/102	NT	6.7%	coding (1017/2598 nt)	htrE	predicted outer membrane usher protein
	?	AP009048	154431 =	53 (0.940)					coding (996/2598 nt)	htrE	predicted outer membrane usher protein

TGTTACCATCGAAGAATCCGATGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AP009048/154434‑154410 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AACAATAAGATCGCTGCCGTACCCTGACGGACTC  >  AP009048/154431‑154464                                                             TGTTACCATCGAAGAATCCGATGGCAACAATAAGATCGCTGCCGTACCCTGACGGACTC  <  1:1994906/59‑1 TGTTACCATCGAAGAATCCGATGGCAACAATAAGATCGCTGCCGTACCCTGACGGACTC  <  1:4900620/59‑1     ACCATCGAAGAATCCGATGGCAACAATAAGATCGCTGCCGTACCCTGACGGACT   >  1:177898/1‑54       CATCGAAGAATCCGATGGCAACAATAAGATCGCTGCCGTACCCTGACG       <  1:2267255/48‑1                                                             TGTTACCATCGAAGAATCCGATGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AP009048/154434‑154410 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AACAATAAGATCGCTGCCGTACCCTGACGGACTC  >  AP009048/154431‑154464

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.