| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 225092 = | NA (NA) | 4 (0.080) | 3/96 | NT | NA | noncoding (1322/1542 nt) | rrsH | 16S ribosomal RNA |
| ? | AP009048 | 225114 = | NA (NA) | noncoding (1344/1542 nt) | rrsH | 16S ribosomal RNA | |||||
CAAGGCCCGGGAACGTATTCACCGTGGCATTCTGATCCACGATTACTAGCGATTCCGACTTCATGGAGTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/225162‑225092‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgCTAGTAATCGTGGATCAGAATGCCACGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCACACCA > AP009048/225114‑225183 CAAGGCCCGGGAACGTATTCACCGTGGCATTCTGATCCACGATTACTAGCGATTCCGACTTCATGGAGTCG < 1:4382729/71‑1CAAGGCCCGGGAACGTATTCACCGTGGCATTCTGATCCACGATTACTAGCGATTCCGACTTCATGGAGTCG < 1:1929250/71‑1CAAGGCCCGGGAACGTATTCACCGTGGCATTCTGATCCACGATTACTAGCGATTCCGACTTCATGGAGTCG < 1:4787546/71‑1CAAGGCCCGGGAACGTATTCACCGTGGCATTCTGATCCACGATTACTAGCGATTCCGACTTCATGGAGTCG < 1:295469/71‑1CAAGGCCCGGGAACGTATTCACCGTGGCATTCTGATCCACGATTACTAGCGATTCCGACTCCATGAAGTCG < 1:2091171/71‑1 ACCGTGGCATTCTGATCCACGATTACTAGCGATTCCGACTTCATGGAGTCG < 1:3117011/51‑1 ATTCTGATCCACGATTACTAGCGATTCCGACTTCATGGAGTCG < 1:3825594/43‑1 ATTCCGATCCACGATTACTAGCGATTCCGACTTCATGGAGTCG < 1:4283514/43‑1 ATCCACGATTACTAGCGATTCCGACTTCATGGAGTCG < 1:1014045/37‑1 AGCGATTCCGACTTCATGGAGTCGCTAGTAATCGTGGATCAGAATGCCACGGTGAATACGTTC > 1:2279181/1‑63 AGCGATTCCGACTTCATGGAGTCGCTAGTAATCGTGGATCAGAATGCCACGGTGAATACGTTC > 1:2161751/1‑63 GCGATTCCGACTTCATGGAGTCGCTAGTAATCGTGGATCAGAATGCCACGGTGAATACGTTCCAGGGCCTT > 1:609670/1‑71 CGATTCCGACTTCATGGAGTCGCTAGTAATCGTGGATCAGAATGCCACGGTGAATAC > 1:4001830/1‑57 TCGCTAGTAATCGTGGATCAGAATGCCACGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCTTCACAC < 1:816128/71‑1 TCGCTAGTAATCGTGGATCAGAATGCCACGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCACAC < 1:291046/71‑1 TCGCTAGTAATCGTGGATCAGAATGCCACGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCACAC > 1:990200/1‑71 TCGCTAGTAATCGTGGATCAGAATGCCACGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCACAC < 1:1547082/71‑1 TCGCTAGTAATCGTGGATCAGAATGCCACGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCACAC < 1:373942/71‑1 TCGCTAGTAATCGTGGATCAGAATGCCACGGTGAATACGTTCCCGGGCCTTGTACACACCGCCC > 1:1573774/1‑64 TCGCTAGTAATCGTGGATCAGAATGCCACGGTGAATACGTTCCCGGGCCTTGTA > 1:4975648/1‑54 CGCTAGTAATCGTGGATCAGAATGCCACGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCACAC > 1:3331385/1‑70 CGCTAGTAATCGTGGATCAGAATGCCACGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGT < 1:3898316/65‑1 GCTAGTAATCGTGGTTCAGAATGCCACGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCACACCA > 1:147945/1‑71 GCTAGTAATCGTGGATCATAATGCCACGGTGAATACGTTCCCGTGCCTTGTACACACCGCCCGTCACACCA < 1:990731/71‑1 GCTAGTAATCGTGGATCAGAATGCCACGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCACACCA < 1:3776905/71‑1 GCTAGTAATCGTGGATCAGAATGCCACGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCACACCA < 1:952087/71‑1 GCTAGTAATCGTGGATCAGAATGCCACGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCACACCA < 1:640420/71‑1 GCTAGTAATCGTGGATCAGAATGCCACGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCACACCA < 1:2305422/71‑1 GCTAGTAATCGTGGATCAGAATGCCACGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCACACCA > 1:4798969/1‑71 GCTAGTAATCGTGGATCAGAATGCCACGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCACACCA > 1:4519240/1‑71 GCTAGTAATCGTGGATCAGAATGCCACGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCACACCA > 1:4353293/1‑71 GCTAGTAATCGTGGATCAGAATGCCACGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCACACCA < 1:3735929/71‑1 GCTAGTAATCGTGGATCAGAATGCCACGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCACACCA < 1:3816712/71‑1 GCTAGTAATCGTGGATCAGAATGCCACGGTGAATACGTTCCCGGGCCTTGTA < 1:2185971/52‑1 GCTAGTAATCGTGGATCAGAATGCCACGGTGAATACGTTCCCGGGCCTTG < 1:3158838/50‑1 GCTAGTAATCGTGGATCAGAATGCCACGGTGAATACGTTCCCGGGCCTTG < 1:3634305/50‑1 GCTAGTAATCGTGGATCAGAATGCCACGGTGAATACGTTCCCGGGCCTTG < 1:3866568/50‑1 GCTAGTAATCGTGGATCAGAATGCCACGGTGAATACGTTCCCGG < 1:1647532/44‑1 GCTAGTAATCGTGGATCAGAATGCCACGGTGAATACGTTCCAGGGCCTTGTACACACCGCCCGTCACACCA > 1:3663221/1‑71 GCTAGTAATCGTGGATCAGAATGCCACGGTGAATA > 1:2555634/1‑35 GCTAGTAATCGCAGATCAGAATGCTGCGGTGAATACGTTCCCGGGCCTTGTACACACC > 1:3027996/1‑58 GCTAGTAATCGCAGATCAGAATGCTGCGGTGAATACGTTCCCGGGCCTTGTACACACC > 1:819153/1‑58 CAAGGCCCGGGAACGTATTCACCGTGGCATTCTGATCCACGATTACTAGCGATTCCGACTTCATGGAGTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/225162‑225092‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgCTAGTAATCGTGGATCAGAATGCCACGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCACACCA > AP009048/225114‑225183 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |