New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AP009048 225889 =NA (NA)4 (0.080) 3/88 NT NA noncoding (131/2904 nt) rrlH 23S ribosomal RNA
?AP009048 225907 = NA (NA)noncoding (149/2904 nt) rrlH 23S ribosomal RNA

ACTTAGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AP009048/225964‑225889
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acacactATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAA  >  AP009048/225907‑225975
                                                                                                                                                 
ACTTAGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAA                                                                             >  1:124358/1‑70
ACTTAGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAA                                                                             >  1:4430614/1‑70
ACTTAGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAA                                                                             >  1:4254780/1‑70
ACTTAGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAA                                                                             >  1:1498141/1‑70
 CTTAGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACA                                                                           >  1:5088695/1‑71
 CTTAGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACA                                                                           >  1:4208589/1‑71
 CTTAGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAAC                                                                            <  1:4903866/70‑1
 CTTAGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAAC                                                                            <  1:1622796/70‑1
 CTTAGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAAC                                                                            <  1:1077645/70‑1
   TAGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATTATAGTGTGTCGAAACACA                                                                         >  1:3865714/1‑71
   TAGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACA                                                                         >  1:2634583/1‑71
   TAGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACA                                                                         >  1:3615914/1‑71
   TAGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACAC                                                                          >  1:637854/1‑70
   TAGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACAC                                                                          >  1:837185/1‑70
    AGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTGAGTTAATGATAGTGTGTCGAAACACAC                                                                        >  1:2267014/1‑71
    AGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACAC                                                                        >  1:1048076/1‑71
    AGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACAC                                                                        >  1:3319209/1‑71
    AGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACAC                                                                        >  1:3027278/1‑71
    AGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACAC                                                                        >  1:2141055/1‑71
    AGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACAC                                                                        >  1:722994/1‑71
    AGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACAC                                                                        >  1:1180526/1‑71
    AGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACA                                                                         >  1:1569766/1‑70
    AGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACA                                                                         <  1:3351600/70‑1
    AGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACA                                                                         <  1:3357660/70‑1
    AGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACA                                                                         <  1:3571057/70‑1
    AGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACA                                                                           >  1:3887375/1‑68
    AGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAA                                                                             >  1:4423973/1‑66
     GATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACACT                                                                       <  1:4943279/71‑1
     GATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACACT                                                                       <  1:2274372/71‑1
     GATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACACT                                                                       <  1:4479167/71‑1
     GATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACAC                                                                        <  1:1203928/70‑1
     GATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACAC                                                                        <  1:2409323/70‑1
     GATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACAC                                                                        <  1:5188902/70‑1
     GATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACAC                                                                        <  1:2694334/70‑1
      ATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACA                                                                         <  1:2703581/68‑1
         TTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACACT                                                                       <  1:2724990/67‑1
         TTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACA                                                                         >  1:1970949/1‑65
         TTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACA                                                                         >  1:4861966/1‑65
          TTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACA                                                                           >  1:3168873/1‑62
           TCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACAC                                                                        >  1:4793672/1‑64
            CAGTTCCCCCGGTTCGGCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAA                                                                             >  1:3483054/1‑58
            CAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACAC                                                                          <  1:1724334/61‑1
             AGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACAC                                                                        >  1:2788179/1‑62
             AGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACAC                                                                        >  1:2184684/1‑62
                 CCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACACT                                                                       >  1:2336122/1‑59
                    CCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAA                                                                             <  1:5102898/50‑1
                         TCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAA                                                                             >  1:2650580/1‑45
                         TCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAA                                                                             >  1:3713837/1‑45
                          CGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACAC                                                                        >  1:4986213/1‑49
                          CGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACAC                                                                        >  1:4258817/1‑49
                          CGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACA                                                                         >  1:4484081/1‑48
                                      CTATGGATTCAGTTAATGATAGTGTGTCGAAACAC                                                                          <  1:3299381/35‑1
                                         TGGATTCAGTTAATGATAGTGTGTCGAAACACACT                                                                       <  1:4864201/35‑1
                                                       GATAGTGTGTCGAAACACACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCG                                  <  1:5038097/58‑1
                                                       GATAGTGTGTCGAAACACACTATCATTAACTGAATCCATAGGTTAATG                                            <  1:4319152/48‑1
                                                       GATAGTGTGTCGAAACACACTATCATTAACTGAATCCATAGGTTAATG                                            <  1:5130873/48‑1
                                                        ATAGTGTGTCGAAACACACTATCATTAACTGAATCCATAGGTTAATGAG                                          <  1:474161/49‑1
                                                                     ACACACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCG       <  1:1175691/71‑1
                                                                     ACACACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCG       <  1:1553775/71‑1
                                                                     ACACACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCG       <  1:5098414/71‑1
                                                                     ACACACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCG       <  1:4769909/71‑1
                                                                     ACACACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACT                          <  1:4928291/52‑1
                                                                      gACACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC                     <  1:4673235/55‑1
                                                                      CACACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGA      <  1:1801895/71‑1
                                                                       ACACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAGCTGAAA                      >  1:4939787/1‑54
                                                                       ACACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAG     >  1:5052133/1‑71
                                                                       ACACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAG     >  1:5041989/1‑71
                                                                       ACACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAA                       <  1:3825998/53‑1
                                                                       ACACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGG                               >  1:118924/1‑45
                                                                        CACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGG    <  1:2292284/71‑1
                                                                        CACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGG                              <  1:532279/45‑1
                                                                        CACTATCATTAACTGAATCCATAGGTTAATGAGGCG                                       <  1:689989/36‑1
                                                                         ACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGTAACTGAAACATCTAAGTACCCCGAGGA   <  1:4957802/71‑1
                                                                         ACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGA   <  1:2078546/71‑1
                                                                         ACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGA   <  1:425774/71‑1
                                                                         ACTATCATTAACTGAATCCATAGGTTAATGAGGCGA                                      <  1:3169373/36‑1
                                                                          CTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAA  <  1:1935594/71‑1
                                                                          CTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAA  <  1:4369047/71‑1
                                                                          CTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAA  <  1:202714/71‑1
                                                                          CTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACAT                   <  1:1473650/54‑1
                                                                          CTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTG                         <  1:1176582/48‑1
                                                                          CTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCG                                  <  1:4245072/39‑1
                                                                           TATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAA  >  1:1245314/1‑70
                                                                           TATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAA  >  1:3734418/1‑70
                                                                           TATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCC        <  1:467935/64‑1
                                                                           TATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCC        <  1:3472215/64‑1
                                                                           TATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACC          >  1:1186690/1‑62
                                                                           TATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTA                <  1:1464090/56‑1
                                                                           TATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC                     <  1:348165/51‑1
                                                                           TATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAA                       <  1:841637/49‑1
                                                                           TATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAAC                           >  1:1154605/1‑45
                                                                                                                                                 
ACTTAGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AP009048/225964‑225889
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acacactATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAA  >  AP009048/225907‑225975

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.