New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AP009048 = 226403NA (NA)3 (0.060) 3/90 NT NA noncoding (645/2904 nt) rrlH 23S ribosomal RNA
?AP009048 = 226408 NA (NA)noncoding (650/2904 nt) rrlH 23S ribosomal RNA

TATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAATAGGGGAGCCGAAGGGAAACCGAGTCTTAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AP009048/226329‑226403
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttaacGCCCAGTTAAGACTCGGTTTCCCTTCGGCTCCCCTATTCGGTTAACCTTGCTACAGAATATAAGTCGCTG  <  AP009048/226408‑226339
                                                                                                                                                 
TATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAATAGGGGAGCCGAAGGGAAACCGAGTC                                                                             <  1:4174953/70‑1
 ATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAATAGGGGAGCCGAAGGGAAACCGAGTCT                                                                            >  1:2731903/1‑70
 ATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAATAGGGGAGCCGAAGGGAAACCGAGTC                                                                             <  1:761904/69‑1
  TAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACTGAATAGGGGAGCCGAAGGGAAACCGAGTCTT                                                                           >  1:2217945/1‑70
  TAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAATAGGGGAGCCGAAGGGAAACCGAGTCTTA                                                                          <  1:1195870/71‑1
  TAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAATAGGGGAGCCGAAGGGAAACCGAGTCTTA                                                                          <  1:2172954/71‑1
  TAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAATAGGGGAGCCGAAGGGAAACCGAGTCTT                                                                           <  1:1927778/70‑1
  TAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAATAGGGGAGCCGAAGGGAAACCGAGTCTT                                                                           >  1:2915584/1‑70
  TAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAATAGGGGAGCCGAAGGGAAACCGAGTCTT                                                                           <  1:976314/70‑1
  TAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAATAGGGGAGCCGAAGGGAAACCGAGTCTT                                                                           >  1:4377431/1‑70
  TAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAATAGGGGAGCCGAAGGGAAACCGAGTCTT                                                                           <  1:2590512/70‑1
  TAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAATAGGGGAGCCGAAGGGAAACCGAGTCTT                                                                           <  1:523301/70‑1
   AATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAATAGGGGAGCCGAAGGGAAACCGAGTCTTAA                                                                         >  1:3066576/1‑71
   AATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAATAGGGGAGCCGAAGGGAAACCGAGTCTTAA                                                                         >  1:3198441/1‑71
   AATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAATAGGGGAGCCGAAGGGAAACCGAGTCTTAA                                                                         >  1:2604731/1‑71
    ATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAATAGGGGAGCCGAAGGGAAACCGAGTCTTAAC                                                                        <  1:3325758/71‑1
    ATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAATAGGGGAGCCGAAGGGAAACCGAGTCTTAAC                                                                        <  1:2233364/71‑1
    ATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAATAGGGGAGCCGAAGGGAAACCGAGTCTTAA                                                                         <  1:634847/70‑1
    ATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAATAGGGGAGCCGAAGGGAAACCGAGTCTTAA                                                                         <  1:1106646/70‑1
    ATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAATAGGGGAGCCGAAGGGAAACCGAGTC                                                                             >  1:3827622/1‑66
     TGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAATAGGGGAGCCGAAGGGAAACCGAGTC                                                                             >  1:1900364/1‑65
          CAGCGACTTATATTCTGTAGCAAGGTTAACCGAATAGGGGAGCCGAAGGGAAACCGAGTCTTA                                                                          >  1:4726270/1‑63
            GCGACTTATATTCTGTAGCAAGGTTAACCGAATAGGGGAGCCGAAGGGAAACCGAGTCTT                                                                           <  1:4708459/60‑1
             CGACTTATATTCTGTAGCAAGGTTAACCGAATAGGGGAGCCGAAGGGAAACCGAGTCTT                                                                           >  1:38840/1‑59
              GACTTATATTCTGTAGCAAGGTTAACCGAATAGGGGAGCCGAAGGGAAACCGAGTCTTA                                                                          <  1:556067/59‑1
                CTTATATTCTGTAGCAAGGTTAACCGAATAGGGGAGCCGAAGGGAAACCGAGTCTT                                                                           <  1:3688795/56‑1
                 TTATATTCTGTAGCAAGGTTAACCGAATAGGGGAGCCGAAGGGAAACCGAGTCTTAAC                                                                        >  1:1676179/1‑58
                  TATATTCTGTAGCAAGGTTAACCGAATAGGGGAGCCGTAGGGAAACCGAGTCTTAACaga                                                                     >  1:2755300/1‑57
                   ATATTCTGTAGCAAGGTTAACCGAATAGGGGAGCCGAAGGGAAACCGAGTCTTAACGCCCAGTTAAGACT                                                          <  1:761809/70‑1
                      TTCTGTAGCAAGGTTAACCGAATAGGGGAGCCGAAGGGAAACCGAGTCTT                                                                           <  1:2064928/50‑1
                      TTCTGTAGCAAGGTTAACCGAATAGGGGAGCCGAAGGGAAACCGAGTCTT                                                                           <  1:2136932/50‑1
                      TTCTGTAGCAAGGTTAACCGAATAGGGGAGCCGAAGGGAAACCGAGTCTT                                                                           <  1:4951785/50‑1
                      TTCTGTAGCAAGGTTAACCGAATAGGGGAGCCGAAGGGAAACCGAGTCTT                                                                           <  1:1508282/50‑1
                       TCTGTAGCAAGGTTAACCGAATAGGGGAGCCGAAGGGAAACCGAGTCTTAA                                                                         >  1:2381480/1‑51
                            AGCAAGGTTAACCGAATAGGGGAGCCGAAGGGAAACCGAGTCTTAAC                                                                        >  1:1796542/1‑47
                               AAGGTTAACCGAATAGGGGAGCCGAAGGGAAACCGAGTCTT                                                                           <  1:1037042/41‑1
                                AGGTTAACCGAATAGGGGAGCCGAAGGGAAACCGAGTCTTAACGCCCA                                                                   >  1:2818045/1‑48
                                AGGTTAACCGAATAGGGGAGCCGAAGGGAAACCGAGTCTTAAC                                                                        >  1:1835052/1‑43
                                AGGTTAACCGAATAGGGGAGCCGAAGGGAAACCGAGTCTTAAC                                                                        >  1:4422302/1‑43
                                AGGTTAACCGAATAGGGGAGCCGAAGGGAAACCGAGTCTT                                                                           <  1:4833945/40‑1
                                 GGTTAACCGAATAGGGGAGCCGAAGGGAAACCGAGTCTTAAC                                                                        >  1:3341342/1‑42
                                 GGTTAACCGAATAGGGGAGCCGAAGGGAAACCGAGTCTTA                                                                          <  1:4831119/40‑1
                                 GGTTAACCGAATAGGGGAGCCGAAGGGAAACCGAGTCTT                                                                           <  1:1310090/39‑1
                                 GGTTAACCGAATAGGGGAGCCGAAGGGAAACCGAGTCTT                                                                           <  1:4624298/39‑1
                                  GTTAACCGAATAGGGGAGCCGAAGGGAAACCGAGTCTTA                                                                          <  1:601042/39‑1
                                  GTTAACCGAATAGGGGAGCCGAAGGGAAACCGAGTCTT                                                                           <  1:4652174/38‑1
                                  GTTAACCGAATAGGGGAGCCGAAGGGAAACCGAGTCTT                                                                           <  1:1890998/38‑1
                                    TAACCGAATAGGGGAGCCGAAGGGAAACCGAGTCTT                                                                           <  1:3892354/36‑1
                                    TAACCGAATAGGGGAGCCGAAGGGAAACCGAGTCTT                                                                           <  1:1437189/36‑1
                                      ACCGAATAGGGGAGCCGAAGGGAAACCGAGTCTTAACGCCCAGTTAAGACTCG                                                        <  1:2243604/53‑1
                                                 GAGCCGAAGGGAAACCGAGTCTTAACGCCCAGTTA                                                               <  1:308629/35‑1
                                                                     CTTAACGCCCAGTTAAGACTCGGTTTCCCTTCGGCTCCCCTATTCGGTTAACCTTGCTACAGAATATAAGT       >  1:2584529/1‑71
                                                                     CTTAACGCCCAGTTAAGACTCGGTTTCCCTTCGGCTCCCCTATTCGGTTAACCTTGCTACAGAATATAAGT       >  1:450145/1‑71
                                                                     CTTAACGCCCAGTTAAGACTCGGTTTCCCTTCGGCTCCCCTATTCGGTTAACCTTGCTACAGAATATAAGT       <  1:876594/71‑1
                                                                     CTTAACGCCCAGTTAAGACTCGGTTTCCCTTCGGCTCCCCTATTCGGTTAACCTTGCTACAGAATATAAGT       <  1:571377/71‑1
                                                                     CTTAACGCCCAGTTAAGACTCGGTTTCCCTTCGGCTCCCCTATTCGGTTAACCTTGCTACAGAATATAAGT       <  1:4242062/71‑1
                                                                     CTTAACGCCCAGTTAAGACTCGGTTTCCCTTCGGCTCCCCTATTCGGTTAACCTTGCTACAGAATATAAGT       >  1:2062691/1‑71
                                                                     CTTAACGCCCAGTTAAGACTCGGTTTCCCTTCGGCTCCCCTATTCGGTTAACCTTGCTACAGAATATAAG        >  1:328072/1‑70
                                                                     CTTAACGCCCAGTTAAGACTCGGTTTCCCTTCGGCTCCCCTATTCGGTTAACCTTGCTACAGAATATAAG        >  1:334162/1‑70
                                                                     CTTAACGCCCAGTTAAGACTCGGTTTCCCTTCGGCTCCCCTATTCGGTTAACCTTGCTACAGAAT             >  1:4555223/1‑65
                                                                      TTAACGCCCAGTTAAGACTCGGTTTCCCTTCGGCTCCCCTATTCGGTTAACCTTGCTACAGAATATAAGTC      >  1:4681940/1‑71
                                                                      TTAACGCCCAGTTAAGACTCGGTTTCCCTTCGGCTCCCCTATTCGGTTAACCTTGCTACAGAAT             <  1:2526226/64‑1
                                                                      TTAACGCCCAGTTAAGACTCGGTTTCCCTTCGGCTCCCCTATTCGGTTAACC                         <  1:2702451/52‑1
                                                                       TAACGCCCAGTTAAGACTCGGTTTCCCTTCGGCTCCCCTATTCGGTTAACCTTGCTACAGAATATAAGTCG     >  1:4355218/1‑71
                                                                       TAACGCCCAGTTAAGACTCGGTTTCCCTTCGGCTCCCCTATTCGGTTAACCTTGCTACAGAATATAAGTCG     >  1:4817146/1‑71
                                                                       TAACGCCCAGTTAAGACTCGGTTTCCCTTCGGCTCCCCTATTCGGTTAACCTTGCTACAGAA              >  1:3822770/1‑62
                                                                       TAACGCCCAGTTAAGACTCGGTTTCCCTTCGGCTCCCCTATTCGGTTAACC                         >  1:1657880/1‑51
                                                                       TAACGCCCAGTTAAGACTCGGTTTCCCTTCGGCTCCCCTATT                                  >  1:2163289/1‑42
                                                                       TAACGCCCAGTTAAGACTCGGTGTCCCTTCGGCTCCCCTATTCGGTTAACCTTGCTACAGAATATAAGTCG     >  1:4718676/1‑71
                                                                        AACGCCCAGTTAAGACTCGGTTTCCCTTCGGCTCCCCTATTCGGTTAACCTTGCTACAGAATATAAGTCGC    >  1:4737656/1‑71
                                                                        AACGCCCAGTTAAGACTCGGTTTCCCTTCGGCTCCCCTATTCGGTTAACCTTGCTACAGAATATAAGTCGC    >  1:152499/1‑71
                                                                        AACGCCCAGTTAAGACTCGGTTTCCCTTCGGCTCCCCTATTCGGTTAACCTTGCTACAGAATATAAGTCG     >  1:2024480/1‑70
                                                                        AACGCCCAGTTAAGACTCGGTTTCCCTTCGGCTCCCCTATTCGGTTAACCTTGCTACAGAATATAAGTCG     >  1:1555164/1‑70
                                                                        AACGCCCAGTTAAGACTCGGTTTCCCTTCGGCTCCCCTATTCGGTTAACCTTGCTACAGAATATAAGTC      <  1:767566/69‑1
                                                                        AACGCCCAGTTAAGACTCGGTTTCCCTTCGGCTCCCCTATTCGGTTAACCTT                       >  1:4521112/1‑52
                                                                        AACGCCCAGTTAAGACTCGGTTTCCCTTCGGCTCCCCTATT                                  <  1:3355281/41‑1
                                                                         ACGCCCAGTTAAGACTCGGTTTCCCTTCGGCTCCCCTATTCGGTTAACCTTGCTACAGAATATAAGTCGCT   >  1:5052406/1‑71
                                                                         ACGCCCAGTTAAGACTCGGTTTCCCTTCGGCTCCCCTATTCGGTTAACCTTGCTACAGAATATAAGTCGCT   >  1:4431482/1‑71
                                                                         ACGCCCAGTTAAGACTCGGTTTCCCTTCGGCTCCCCTATTCGGTTAACCTTGCTACAGAATATAAGTCGCT   >  1:4657260/1‑71
                                                                         ACGCCCAGTTAAGACTCGGTTTCCCTTCGGCTCCCCTATTCGGTTAACCTTGCTACAGAATATAAGTCGCT   >  1:4577404/1‑71
                                                                         ACGCCCAGTTAAGACTCGGTTTCCCTTCGGCTCCCCTATTCGGTTAACCTTGCTACAGAATATAAGTCGCT   >  1:4279067/1‑71
                                                                         ACGCCCAGTTAAGACTCGGTTTCCCTTCGGCTCCCCTATTCGGTTAACCTTGCTACAGAATATAAGTCGCT   >  1:4257319/1‑71
                                                                         ACGCCCAGTTAAGACTCGGTTTCCCTTCGGCTCCCCTATTCGGTTAACCTTGCTACAGAATATAAGTCGCT   <  1:2141902/71‑1
                                                                         ACGCCCAGTTAAGACTCGGTTTCCCTTCGGCTCCCCTATTCGGTTAACCTTGCTACAGAATATAAGTCGCT   <  1:2257377/71‑1
                                                                         ACGCCCAGTTAAGACTCGGTTTCCCTTCGGCTCCCCTATTCGGTTAACCTTGCTACAGAATATAAGTCGCT   <  1:3246705/71‑1
                                                                         ACGCCCAGTTAAGACTCGGTTTCCCTTCGGCTCCCCTATTCGGTTAACCTTGCTACAGAATATAAGTCG     <  1:1816501/69‑1
                                                                         ACGCCCAGTTAAGACTCGGTTTCCCTTCGGCTCCCCTATTCGG                               >  1:1017750/1‑43
                                                                          CGCCCAGTTAAGACTCGGTTTCCCTTCGGCTCCCCTATTCGGTTAACCTTGCTACAGAATATAAGTCGCTG  <  1:2277580/71‑1
                                                                          CGCCCAGTTAAGACTCGGTTTCCCTTCGGCTCCCCTATTCGGTTAACCTTGCTACAGAA              <  1:4369397/59‑1
                                                                          CGCCCAGTTAAGACTCGGTTTCCCTTCGGCTCCCCTATTCGGTTAACCTTGCT                    <  1:2999437/53‑1
                                                                          CGCCCAGTTAAGACTCGGTTTCCCTTCGGCTCCCCTATTCGGTTAACCTTG                      >  1:3215293/1‑51
                                                                                                                                                 
TATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAATAGGGGAGCCGAAGGGAAACCGAGTCTTAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AP009048/226329‑226403
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttaacGCCCAGTTAAGACTCGGTTTCCCTTCGGCTCCCCTATTCGGTTAACCTTGCTACAGAATATAAGTCGCTG  <  AP009048/226408‑226339

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.