New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AP009048 227072 =NA (NA)4 (0.080) 4/94 NT NA noncoding (1314/2904 nt) rrlH 23S ribosomal RNA
?AP009048 227097 = NA (NA)noncoding (1339/2904 nt) rrlH 23S ribosomal RNA

TTTCCCATCGACTACGCCTTTCGGCCTCGCCTTAGGGGTCGACTCACCCTGCCCCGATTAACGTTGGACAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AP009048/227143‑227072
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggGTGAGTCGACCCCTAAGGCGAGGCCGAAAGGCGTAGTCGATGGGAAACAGGTTAATATTCCTGTACTTGG  >  AP009048/227097‑227166
                                                                                                                                              
TTTCCCATCGACTACGCCTTTCGGCCTCGCCTTAGGGGTCGACTCACCCTGCCCCGATTAACGTTGGACAG                                                                         >  1:3867215/1‑71
TTTCCCATCGACTACGCCTTTCGGCCTCGCCTTAGGGGTCGACTCACCCTGCCCCGATTAACGTTGGACAG                                                                         >  1:3330864/1‑71
TTTCCCATCGACTACGCCTTTCGGCCTCGCCTTAGGGGTCGACTCACCCTGCCCCGATTAACGTTGGACAG                                                                         <  1:1618159/71‑1
TTTCCCATCGACTACGCCTTTCGGCCTCGCCTTAGGGGTCGACTCACCCTGCCCCGATTAACGTTGGACAG                                                                         <  1:1697487/71‑1
TTTCCCATCGACTACGCCTTTCGGCCTCGCCTTAGGGGTCGACTCACCCTGCCCCGATTAACGTTGGACAG                                                                         <  1:3525655/71‑1
TTTCCCATCGACTACGCCTTTCGGCCTCGCCTTAGGGGTCGACTCACCCTGCCCCGATTAACGTTGGACAG                                                                         <  1:1726116/71‑1
TTTCCCATCGACTACGCCTTTCGGCCTCGCCTTAGGGGTCGACTCACCCTGCCCCGATTAACGTTGGACAG                                                                         <  1:3077324/71‑1
TTTCCCATCGACTACGCCTTTCGGCCTCGCCTTAGGGGTCGACTCACCCTGCCCCGATTAACGTTGGACA                                                                          <  1:849484/70‑1
TTTCCCATCGACTACGCCTTTCGGCCTCGCCTTAGGGGTCGACTCACCCTGCCCCGATTAACGTTGGAC                                                                           <  1:1358361/69‑1
TTTCCCATCGACTACGCCTTTCGGCCTCGCCTTAGGGGTCGACTCACCCTGCCCCGATTAACGTTGGAC                                                                           <  1:1925634/69‑1
TTTCCCATCGACTACGCCTTTCGGCCTCGCCTTAGGGGTCGACTCACCCTGCCCCGATTAACGTTGGAC                                                                           <  1:733295/69‑1
 TTCCCATCGACTACGCCTTTCGGCCTCGCCTTAGGGGTCGACTCACCCTGCCCCGATTAACGTTGGACAG                                                                         >  1:4199719/1‑70
  TCCCATCGACTACGCCTTTCGGCCTCGCCTTAGGGGTCGACTCACCCTGCCCCGATTAACGTTGGACAGG                                                                        >  1:2616206/1‑70
  TCCCATCGACTACGCCTTTCGGCCTCGCCTTAGGGGTCGACTCACCCTGCCCCGATTAACGTTGGACAGG                                                                        <  1:2768108/70‑1
  TCCCATCGACTACGCCTTTCGGCCTCGCCTTAGGGGTCGACTCACCCTGCCCCGATTAACGTTGGACAGG                                                                        <  1:3676857/70‑1
  TCCCATCGACTACGCCTTTCGGCCTCGCCTTAGGGGTCGACTCACCCTGCCCCGATTAACGTTGGACAGG                                                                        >  1:3243263/1‑70
  TCCCATCGACTACGCCTTTCGGCCTCGCCTTAGGGGTCGACTCACCCTGCCCCGATTAACGTTGGACAGG                                                                        >  1:2181615/1‑70
  TCCCATCGACTACGCCTTTCGGCCTCGCCTTAGGGGTCGACTCACCCTGCCCCGATTAACGTTGGACAGG                                                                        >  1:2097572/1‑70
  TCCCATCGACTACGCCTTTCGGCCTCGCCTTAGGGGTCGACTCACCCTGCCCCGATTAACGTTGGACAG                                                                         >  1:3534473/1‑69
  TCCCATCGACTACGCCTTTCGGCCTCGCCTTAGGGGTCGACTCACCCTGCCACGATTAACGTTGGACAGG                                                                        >  1:1587769/1‑70
    CCATCGACTACGCCTTTCGGCCTCGCCTTAGGGGTCGACTCACCCTGCCCCGATTAACGTTGGACAG                                                                         >  1:2762363/1‑67
      ATCGACTACGCCTTTCGGCCTCGCCTTAGGGGTCGACTCACCCTGCCCCGATTAACGTTGGACAG                                                                         <  1:157899/65‑1
       TCGACTACGCCTTTCGGCCTCGCCTTAGGGGTCGACTCACCCTGCCCCGATTAACGTTGGACAG                                                                         >  1:1725954/1‑64
       TCGACTACGCCTTTCGGCCTCGCCTTAGGGGTCGACTCACCCTGCCCCGATTAACGTTGGACA                                                                          >  1:394107/1‑63
        CGACTACGCCTTTCGGCCTCGCCTTAGGGGTCGACTCACCCTGCCCCGATTAACGTTGGACAG                                                                         >  1:5112822/1‑63
         GACTACGCCTTTCGGCCTCGCCTTAGGGGTCGACTCACCCTGCCCCGATTAACGTTGGACA                                                                          >  1:2147854/1‑61
               GCCTTTCGGCCTCGCCTTAGGGGTCGACTCACCCTGCCCCGATTAACGTTGGACAGG                                                                        <  1:3947695/57‑1
                 CTTTCGGCCTCGCCTTAGGGGTCGACTCACCCTGCCCCGATTAACGTTGGACA                                                                          >  1:2471782/1‑53
                  TTTCGGCCTCGCCTTAGGGGTCGACTCACCCTGCCCCGATTAACGTTGGAC                                                                           >  1:99408/1‑51
                    TCGGCCTCGCCTTAGGGGTCGACTCACCCTGCCCCGATTAACGTTGGACA                                                                          >  1:2864757/1‑50
                     CGGCCTCGCCTTAGGGGTCGACTCACCCTGCCCCGATTAACGTTGGACA                                                                          >  1:4515094/1‑49
                     CGGCCTCGCCTTAGGGGTCGACTCACCCTGCCCCGATTAACGTTGGACA                                                                          >  1:2934875/1‑49
                          TCGCCTTAGGGGTCGACTCACCCTGCCCCGATTAACGTTGGAC                                                                           <  1:3622185/43‑1
                          TCGCCTTAGGGGTCGACTCACCCTGCCCCGATTAACGTTGGAC                                                                           <  1:2453857/43‑1
                              CTTAGGGGTCGACTCACCCTGCCCCGATTAACGTTGGACAG                                                                         >  1:2806035/1‑41
                                TAGGGGTCGACTCACCCTGCCCCGATTAACGTTGGACAG                                                                         >  1:2855365/1‑39
                                 AGGGGTCGACTCACCCTGCCCCGATTAACGTTGGAC                                                                           >  1:1858733/1‑36
                                  GGGGTCGACTCACCCTGCCCCGATTAACGTTGGACAG                                                                         >  1:295227/1‑37
                                           TCACCCTGCCCCGATTAACGTTGGACAGGGTGAGTCGACCCCTAAGGCGAGGCCGAAAGGCGTAGTCGATG                              >  1:3205811/1‑71
                                             ACCCTGCCCCGATTAACGTTGGACAGGGTGAGTCGACCCCTAAGGCGAGGCCGAAAGGCGTAGTCGATGG                             >  1:1760515/1‑70
                                             ACCCTGCCCCGATTAACGTTGGACAGGGTGAGTCGACCCCTAAGGCGAGGCCGAAAGGCGTA                                     <  1:1942894/62‑1
                                                   CCCCGATTAACGTTGGACAGGGTGAGTCGACCCCTAAGGCGAGGCCGAAAGGCGTAGTCGATGGGAAAC                        <  1:4640211/69‑1
                                                                    CAGGGTGAGTCGACCCCTAAGGCGAGGCCGAAAGGCGTAGTCGATGGGAAACAGGTTAATATTCCTGTACT     <  1:3055092/71‑1
                                                                    CAGGGTGAGTCGACCCCTAAGGCGAGGCCGAAAGGCGTAGTCGATGGGAAACAGGTTAATATTCCTGTACT     <  1:2724403/71‑1
                                                                    CAGGGTGAGTCGACCCCTAAGGCGAGGCCGAAAGGCGTAGTCGATGGGAAACAGGTTAATATTCCTGTACT     <  1:4951835/71‑1
                                                                    CAGGGTGAGTCGACCCCTAAGGCGAGGCCGAAAGGCGTAGTCGATGGGAAACAGGTTAATATTCCTGTACT     <  1:3684864/71‑1
                                                                    CAGGGTGAGTCGACCCCTAAGGCGAGGCCGAAAGGCGTAGTCGATGGGAAACAGGTTAATATTCCT          >  1:1910981/1‑66
                                                                    CAGGGTGAGTCGACCCCTAAGGCGAGGCCGAAAGGCGTAGTCGATGGGAAA                         <  1:3186407/51‑1
                                                                    CAGGGTGAGTCGACCCCTAAGGCGAGGCCGAAAGGCGTAGTCGATGGGAAA                         <  1:4006782/51‑1
                                                                    CAGGGGGAGTCGACCCCTAAGGCGAGGCCGAAAGGCGTAGTCGATGGGAAACAGGTTAATATTCCTGTACT     <  1:4101133/71‑1
                                                                     AGGGTGAGTCGACCCCTAAGGCGAGGCCGAAAGGCGTAGTCGATGGGAAACAGGTTAATATTCCTGTACTT    <  1:4938879/71‑1
                                                                     AGGGTGAGTCGACCCCTAAGGCGAGGCCGAAAGGCGTAGTCGATGGGAAACAGGTTAATATTCCTGTACTT    >  1:4032752/1‑71
                                                                     AGGGTGAGTCGACCCCTAAGGCGAGGCCGAAAGGCGTAGTCGATGGGAAACAGGTTAAT                >  1:1519362/1‑59
                                                                     AGGGTGAGTCGACCCCTAAGGCGAGGCCGAAAGGCGTAGTCGATGGGAAA                         >  1:3669666/1‑50
                                                                      GGGTGAGTCGACCCCTAAGGCGAGGCCGAAAGGCGTAGTCGATGGGAAACAGGTTAATATTCCTGTACTTG   >  1:2136211/1‑71
                                                                      GGGTGAGTCGACCCCTAAGGCGAGGCCGAAAGGCGTAGTCGATGGGAAACAGGTTAATATTCCTGTACTTG   >  1:4839169/1‑71
                                                                      GGGTGAGTCGACCCCTAAGGCGAGGCCGAAAGGCGTAGTCGATGGGAAACAGGTTAATATTCCTGTACTTG   <  1:2436487/71‑1
                                                                       GGTGAGTCGACCCCTAAGGCGAGGCCGAAAGGCGTAGTCGATGGGAAACAGGTTAATATTCCTGTACTTGG  <  1:2025511/71‑1
                                                                       GGTGAGTCGACCCCTAAGGCGAGGCCGAAAGGCGTAGTCGATGGGAAACAGGTTAATATTCCTGTACTTGG  <  1:2542033/71‑1
                                                                       GGTGAGTCGACCCCTAAGGCGAGGCCGAAAGGCGTAGTCGATGGGAAACAGGTTAATATTCCTGTACTTGG  >  1:555149/1‑71
                                                                       GGTGAGTCGACCCCTAAGGCGAGGCCGAAAGGCGTAGTCGATGGGAAACAGGTTAATATTCCTGTACTTGG  <  1:723153/71‑1
                                                                       GGTGAGTCGACCCCTAAGGCGAGGCCGAAAGGCGTAGTCGATGGGAAACAGGTTAATATTCCTGTACTTGG  <  1:2703516/71‑1
                                                                       GGTGAGTCGACCCCTAAGGCGAGGCCGAAAGGCGTAGTCGATGGGAAACAGGTTAATATTCCTGTACTTGG  >  1:3373945/1‑71
                                                                       GGTGAGTCGACCCCTAAGGCGAGGCCGAAAGGCGTAGTCGATGGGAAACAGGTTAATATTCCTGTACTTGG  >  1:2844475/1‑71
                                                                       GGTGAGTCGACCCCTAAGGCGAGGCCGAAAGGCGTAGT                                   <  1:1911236/38‑1
                                                                                                                                              
TTTCCCATCGACTACGCCTTTCGGCCTCGCCTTAGGGGTCGACTCACCCTGCCCCGATTAACGTTGGACAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AP009048/227143‑227072
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggGTGAGTCGACCCCTAAGGCGAGGCCGAAAGGCGTAGTCGATGGGAAACAGGTTAATATTCCTGTACTTGG  >  AP009048/227097‑227166

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.