New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AP009048 = 274373NA (NA)61 (1.080) 32/102 NT 100% intergenic (‑32/‑176) insH/mmuP IS5 transposase and trans‑activator/predicted S‑methylmethionine transporter
?AP009048 576000 = 0 (0.000)pseudogene (109/1128 nt) nmpC DLP12 prophage region; ECK0544:JW5078:b0553; truncated outer membrane porin

Only 100 of 140 total aligned reads displayed.

ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AP009048/274304‑274373
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCTTTTTTTG  >  AP009048/576000‑576065
                                                                                                                                        
ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT                                                                   >  1:5047399/1‑71
ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT                                                                   >  1:4247268/1‑71
ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT                                                                   <  1:3656762/71‑1
ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT                                                                   >  1:3561515/1‑71
ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT                                                                   >  1:3386035/1‑71
ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT                                                                   >  1:4436633/1‑71
ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT                                                                   >  1:597092/1‑71
ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT                                                                   >  1:1334843/1‑71
ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT                                                                   <  1:292151/71‑1
ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT                                                                   >  1:2676344/1‑71
ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT                                                                   >  1:2671098/1‑71
ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT                                                                   >  1:1785328/1‑71
ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT                                                                   >  1:521189/1‑71
 TGATGAACCCTGTTCTATGGCTCCAGATGACAAACTTGATCTCATATCAGGGACTTGTACGCACCTTCCTT                                                                  <  1:1870181/71‑1
 TGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT                                                                  <  1:4018154/71‑1
 TGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT                                                                   >  1:4803037/1‑70
 TGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT                                                                   >  1:2468427/1‑70
 TGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT                                                                   >  1:4186989/1‑70
 TGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT                                                                   >  1:655876/1‑70
  GATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT                                                                  >  1:3236338/1‑70
  GATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT                                                                   >  1:2843845/1‑69
  GATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT                                                                   <  1:123001/69‑1
  GATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT                                                                   >  1:3015749/1‑69
  GATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT                                                                   <  1:2325853/69‑1
   ATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG                                                                <  1:2515076/71‑1
   ATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG                                                                <  1:3240145/71‑1
   ATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTA                                                                 <  1:2829321/70‑1
    TGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG                                                                >  1:2388379/1‑70
     GAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTA                                                              >  1:2252167/1‑71
     GAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTA                                                              >  1:353983/1‑71
      AACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTAC                                                             >  1:3907871/1‑71
       ACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACT                                                            <  1:3301833/71‑1
       ACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACT                                                            <  1:4869555/71‑1
       ACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT                                                                   <  1:3824695/64‑1
         CCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGA                                                          >  1:1883602/1‑71
         CCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT                                                                  <  1:2446281/63‑1
          CTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGAT                                                         <  1:2392396/71‑1
           TGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT                                                                  <  1:2749323/61‑1
             TTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACT                                                            <  1:675007/65‑1
             TTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTA                                                                 <  1:2718833/60‑1
             TTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT                                                                  <  1:3777241/59‑1
              TCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGT                                                               >  1:3441111/1‑61
              TCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT                                                                   <  1:260272/57‑1
               CTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT                                                                  <  1:1097565/57‑1
                  TGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTA                                                  <  1:2270458/70‑1
                    GCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAG                                               >  1:2217007/1‑71
                      TCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACT                                                            <  1:1632994/56‑1
                      TCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT                                                                  <  1:1648785/50‑1
                        CAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGA                                           <  1:3367715/71‑1
                         AGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTA                                                              >  1:4551341/1‑51
                           ATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAAT                                        >  1:692101/1‑71
                            TGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT                                                                  >  1:3527469/1‑44
                              ACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT                                                                   <  1:2139511/41‑1
                              ACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT                                                                   <  1:4822889/41‑1
                               CAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCC                                    <  1:443282/71‑1
                               CAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGC                                     <  1:2430330/70‑1
                               CAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT                                                                  >  1:570116/1‑41
                                AAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAA                                         <  1:2391127/65‑1
                                AAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAA                                          <  1:312725/64‑1
                                AAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT                                                                  <  1:1868308/40‑1
                                 AACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGC                                     <  1:3661124/68‑1
                                 AACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGT                                                               >  1:2996599/1‑42
                                  ACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACT                                 >  1:4783694/1‑71
                                  ACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAG                                                     >  1:359447/1‑51
                                  ACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG                                                                >  1:407485/1‑40
                                  ACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG                                                                >  1:3804312/1‑40
                                  ACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG                                                                >  1:1096479/1‑40
                                  ACATGATCTCATATCAGGGACTTGTTCGCACATTCCTT                                                                  >  1:1470457/1‑38
                                   CATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG                                                                >  1:913138/1‑39
                                   CATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG                                                                >  1:128188/1‑39
                                     TGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGT                               >  1:525708/1‑70
                                     TGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGT                               >  1:209709/1‑70
                                     TGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG                                                                >  1:5101862/1‑37
                                      GATCTCATATCAGGGACTTGTTCGCAGCTTCCTTAGTACT                                                            <  1:3783855/40‑1
                                        TCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGGAGCTACAGCAGAAATTGCCACTGTTAAT                           >  1:2367194/1‑71
                                           CATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTT                        >  1:4204125/1‑71
                                            ATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTT                       >  1:4066985/1‑71
                                            ATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTT                        <  1:4958747/70‑1
                                               TCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAG                                                     >  1:2545856/1‑38
                                                CAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAA                                          <  1:3316801/48‑1
                                                   GGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTT                         <  1:637240/62‑1
                                                       TTGTTCGCACCTTCCTTAGTACTGATGCATCTACAGCAGAAAT                                        <  1:2173351/43‑1
                                                       TTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGC            >  1:1192907/1‑71
                                                       TTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCAC                                  >  1:396080/1‑49
                                                       TTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAAT                                        <  1:4461759/43‑1
                                                       TTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAAT                                        <  1:3733079/43‑1
                                                         GTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCC          >  1:579901/1‑71
                                                          TTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATT                          <  1:764613/54‑1
                                                          TTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTA                             <  1:3280619/51‑1
                                                          TTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTA                             <  1:1564428/51‑1
                                                              CACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCTTTTT     <  1:4144397/71‑1
                                                              CACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCTTTTT     >  1:631312/1‑71
                                                               ACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCTTTTTT    >  1:131461/1‑71
                                                               ACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCTTTTTT    >  1:1706945/1‑71
                                                                  TTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCTTTTTTT   >  1:4238400/1‑69
                                                                  TTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGC            >  1:5076005/1‑60
                                                                  TTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACT                                 <  1:1069072/39‑1
                                                                   TCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCTTTTTTTG  <  1:1286477/69‑1
                                                                   TCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTT                        <  1:4653299/47‑1
                                                                   TCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATT                          >  1:1983479/1‑45
                                                                                                                                        
ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AP009048/274304‑274373
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCTTTTTTTG  >  AP009048/576000‑576065

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.