New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AP009048 = 2173564NA (NA)84 (1.520) 51/100 NT 100% pseudogene (307/2041 nt)
pseudogene (307/339 nt)
gatR
gatR
DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498
DNA‑binding transcriptional regulator, C‑ter fragment; ECK2083:JW2074:b2090
?AP009048 3920276 = 0 (0.000)coding (91/213 nt) cspA major cold shock protein

Only 100 of 108 total aligned reads displayed.

GCCTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCa‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AP009048/2173495‑2173564
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGAT  >  AP009048/3920276‑3920345
                                                                                                                                            
GCCTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCA                                                                       <  1:2602359/71‑1
GCCTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCA                                                                       >  1:2653054/1‑71
GCCTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCA                                                                       <  1:3261572/71‑1
GCCTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCA                                                                       <  1:1849110/71‑1
GCCTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCA                                                                       >  1:4587551/1‑71
 CCTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCA                                                                       >  1:3554036/1‑70
   TCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACA                                                                     >  1:3780014/1‑70
    CAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACA                                                                   >  1:514300/1‑71
     AGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACtt                                                                  >  1:1392294/1‑69
     AGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACtt                                                                  <  1:3941866/71‑3
     AGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACtt                                                                  <  1:1933602/71‑3
     AGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACtt                                                                  <  1:898544/71‑3
     AGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACAT                                                                  >  1:926751/1‑71
       TCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCg                                                                <  1:4585584/71‑2
       TCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCg                                                                >  1:1263638/1‑70
       TCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCg                                                                >  1:2865742/1‑70
       TCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCT                                                                <  1:3442312/71‑1
         CGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTT                                                              <  1:1435928/71‑1
         CGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTT                                                               >  1:1034012/1‑70
         CGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTT                                                               >  1:3261510/1‑70
           GAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCA                                                                       <  1:3537613/60‑1
           GAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCA                                                                       <  1:2882507/60‑1
            AACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTA                                                             >  1:3599052/1‑69
              CAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGC                                                         >  1:424497/1‑71
                ATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCA                                                       <  1:4610802/71‑1
                 TTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCAT                                                      >  1:3410805/1‑71
                 TTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCA                                                       <  1:2290896/70‑1
                   TGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCG                                                    >  1:3161508/1‑71
                     AAAACAAGAGCCTCGCTTAGGCCTCTGTCCATATTACGTGGGTAGGATCACACTTC                                                                 >  1:499137/1‑56
                     AAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACCTCTTTA                                                             <  1:7889/60‑1
                     AAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGT                                                   <  1:303165/70‑1
                         CAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAG                                                <  1:4318223/69‑1
                         CAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAG                                                >  1:717301/1‑69
                         CAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACAT                                                                  >  1:2418952/1‑51
                          AAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCA                                                       <  1:4965035/61‑1
                          AAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAG                                                            >  1:2864964/1‑56
                          AAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAG                                                            >  1:1708456/1‑56
                          AAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTT                                                              <  1:341467/54‑1
                          AAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTT                                                              <  1:3768536/54‑1
                           AGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGT                                            >  1:4419678/1‑71
                            GAACGTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAG                                             >  1:3870794/1‑69
                             AACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATC                                                     >  1:4223959/1‑60
                                  CGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTT                                                               <  1:3403589/45‑1
                                   GCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCTCACATCTTTAGAGCCATCGTCAGGAGTGATGAAGC                                    >  1:335480/1‑71
                                   GCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGC                                    >  1:3877553/1‑71
                                       AGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGA                                 <  1:3416944/70‑1
                                       AGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCG                                  <  1:1206129/69‑1
                                        GGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAA                                <  1:1967952/70‑1
                                         GCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGAT                                         <  1:1404381/60‑1
                                         GCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGAT                                         <  1:2823159/60‑1
                                         GCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAG                                                <  1:2225730/53‑1
                                         GCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAG                                                            >  1:2220467/1‑41
                                          CCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCC                             <  1:413412/71‑1
                                          CCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTC                                                  <  1:2402513/50‑1
                                           CTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCT                            <  1:1857322/71‑1
                                           CTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCT                            <  1:4638316/71‑1
                                            TGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTG                                           >  1:4274712/1‑55
                                            TGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCG                                                    <  1:810440/46‑1
                                            TGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGC                                                         <  1:492318/41‑1
                                             GTGTCCATATTACGTGGGTAGGATCAAACATCTTAAGAGACAT                                                      >  1:4802050/1‑43
                                              TGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTT                          <  1:3807519/70‑1
                                              TGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTT                           <  1:3154989/69‑1
                                              TGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTT                           <  1:4636285/69‑1
                                              TGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTT                           <  1:315798/69‑1
                                              TGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCG                                                    <  1:4387447/44‑1
                                               GTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCA                                                 >  1:486071/1‑46
                                                TCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGA                                       >  1:2723965/1‑55
                                                  CATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAG                     >  1:400675/1‑71
                                                  CATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAG                     >  1:1351786/1‑71
                                                  CATATTACGTGGGTAGGATCACACATCTTTAGAGCCA                                                       >  1:5183545/1‑37
                                                   ATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAG                               >  1:2763993/1‑60
                                                   ATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATG                                        <  1:3941755/51‑1
                                                   ATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATG                                        <  1:2831492/51‑1
                                                   ATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTG                                           <  1:2681750/48‑1
                                                    TATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCG                   <  1:1385360/71‑1
                                                    TATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGC                    >  1:47685/1‑70
                                                    TATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAG                                                <  1:527216/42‑1
                                                      TTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTT                 >  1:1628203/1‑71
                                                      TTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTT                 <  1:850553/71‑1
                                                      TTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGC                    >  1:3991449/1‑68
                                                      TTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAG                                                <  1:3724427/40‑1
                                                      TTACGTGGGTAGGATCAAACATCTTTAGAGCCATCGTCAG                                                >  1:4521330/1‑40
                                                       TACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGA                                 <  1:1625777/54‑1
                                                        ACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGT                        >  1:5040963/1‑62
                                                          GTGGGTAGGTTCACACATCTTTAGAGGCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAAC             <  1:4453559/71‑1
                                                          GTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGA                                       <  1:4842484/45‑1
                                                          GTGGGTAGGATCACACATCTTTAGAGCCATCGTCA                                                 >  1:2413230/1‑35
                                                             GGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCA           <  1:1431930/70‑1
                                                             GGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGGCAG                     <  1:3560462/60‑1
                                                               TAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTT        <  1:2086579/71‑1
                                                               TAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATG                                        <  1:118581/39‑1
                                                                AGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTT        >  1:2653722/1‑70
                                                                   ATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTAC     >  1:24987/1‑70
                                                                    TCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGA   >  1:3880560/1‑71
                                                                     CACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGA   >  1:4511307/1‑70
                                                                     CACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTT                 >  1:3779721/1‑56
                                                                     CACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCA                      <  1:3751928/51‑1
                                                                     CACACATCTTTAGAGCCATCGTCAGGAGTGATGAAG                                     <  1:835327/36‑1
                                                                      ACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGAT  <  1:2233340/70‑1
                                                                      ACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGC                              >  1:3404174/1‑42
                                                                                                                                            
GCCTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCa‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AP009048/2173495‑2173564
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGAT  >  AP009048/3920276‑3920345

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.