| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 2412225 | NA (NA) | 68 (1.210) | 46/102 | NT | 94.4% | intergenic (‑55/‑782) | insA/yfbQ | IS1 element protein/predicted aminotransferase |
| ? | AP009048 | = 3748805 | 4 (0.070) | coding (176/984 nt) | tnaB | tryptophan transporter of low affinity | |||||
AGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/2412156‑2412225‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATTTAATCG < AP009048/3748805‑3748737 AGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCT > 1:4716967/1‑71 GAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTG < 1:3210002/71‑1 GAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCT < 1:289828/70‑1 AAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGT < 1:1653546/71‑1 AAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGT < 1:1388562/71‑1 ACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTA < 1:3662833/71‑1 ACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTA > 1:4859534/1‑71 CAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTAT > 1:981812/1‑71 GAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTA < 1:3011806/71‑1 AAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCT < 1:3002946/63‑1 AGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGA < 1:1515459/71‑1 AGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTA < 1:1351921/69‑1 AGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTT > 1:530280/1‑65 CACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAG > 1:1158342/1‑70 ACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCA < 1:4507922/71‑1 CTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCA > 1:4516544/1‑70 TGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAA > 1:397031/1‑71 TGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAA > 1:3817284/1‑71 GAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATT > 1:762968/1‑71 AGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTT < 1:118096/71‑1 AGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATT > 1:585004/1‑70 GCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTA < 1:3136073/71‑1 CACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTAT < 1:1895863/56‑1 ACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAA < 1:2086381/70‑1 ccaCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAAT > 1:4115005/4‑65 CCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAAT > 1:5051129/1‑71 CTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAAT > 1:2795502/1‑70 CTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTA < 1:2074414/67‑1 CTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTA < 1:1262426/67‑1 CTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAA < 1:1239372/58‑1 TCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATT < 1:4347462/70‑1 CAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTAT > 1:4491982/1‑71 CAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAAT > 1:2550173/1‑68 CAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGT > 1:2662744/1‑48 AAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATC > 1:681391/1‑71 AAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATC > 1:498936/1‑71 AAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATC > 1:112625/1‑71 AAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTA < 1:562671/69‑1 AAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTT < 1:162498/48‑1 AAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCC > 1:3743243/1‑71 AAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATC > 1:4731676/1‑69 AAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGA > 1:1030087/1‑52 AACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCG < 1:1369543/71‑1 CCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGG < 1:1629389/71‑1 CCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTA < 1:2028503/57‑1 CCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTA < 1:2437729/57‑1 CATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTA > 1:2182672/1‑56 CATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAG > 1:345089/1‑48 TCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTC < 1:1619582/71‑1 TCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAAT < 1:2422840/57‑1 TCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTA < 1:2511606/54‑1 ATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGCCTCCA < 1:5185618/71‑1 ACACTAAATCAGTAAGTTGGCAGCATCACCTGTTAT > 1:3092605/1‑36 ACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAA > 1:2365011/1‑43 CTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTT < 1:4334090/71‑1 CTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTAT > 1:340667/1‑53 CTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAA < 1:4735649/48‑1 TAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTT > 1:949316/1‑70 TAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTT > 1:1792552/1‑70 TAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTT < 1:1277455/45‑1 TAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTT < 1:3269146/45‑1 TAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAA < 1:1255547/37‑1 AAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAAT > 1:3354786/1‑48 AATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAA > 1:2986435/1‑70 AATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAA > 1:283827/1‑70 AATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAA < 1:2070897/70‑1 AATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTA < 1:5168675/69‑1 CAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAA > 1:4801215/1‑67 GTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCAT < 1:1608929/71‑1 TAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAG < 1:3166418/58‑1 TAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAA < 1:2415492/39‑1 AGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCAC > 1:3765457/1‑71 AGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCAC > 1:3315968/1‑71 GGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCA > 1:1047146/1‑69 GCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATT > 1:4595734/1‑71 CATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATT > 1:3880294/1‑70 CATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCG > 1:4593878/1‑40 ATCACCTGTTATTAGAAGCAAATTTAAATTCTACCG > 1:1597424/1‑36 ATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATTTA < 1:1004402/71‑1 TCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAG < 1:4143977/65‑1 TCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAG < 1:3176200/65‑1 CACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATTTA > 1:2562300/1‑69 CCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATTTAATCG > 1:4371874/1‑71 CCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATTTAATCG < 1:3948363/71‑1 CCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATTTAATCG > 1:3688986/1‑71 AGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/2412156‑2412225‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATTTAATCG < AP009048/3748805‑3748737 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |