New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AP009048 2727295 =NA (NA)4 (0.080) 4/94 NT NA noncoding (546/2904 nt) rrlG 23S ribosomal RNA
?AP009048 2727314 = NA (NA)noncoding (527/2904 nt) rrlG 23S ribosomal RNA

CGAAAAGAACCCCGGCGAGGGGAGTGAAAAAGAACCTGAAACCGTGTACGTACAAGCAGTGGGAGCACGCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AP009048/2727366‑2727295
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcttGTACGTACACGGTTTCAGGTTCTTTTTCACTCCCCTCGCCGGGGTTCTTTTCGCCTTTCCCTCACGGTAC  >  AP009048/2727314‑2727383
                                                                                                                                              
CGAAAAGAACCCCGGCGAGGGGAGTGAAAAAGAACCTGAAACCGTGTACGTACACGCAGTGGGAGCACGCT                                                                         <  1:2379872/71‑1
CGAAAAGAACCCCGGCGAGGGGAGTGAAAAAGAACCTGAAACCGTGTACGTACAAGCAGTGGGAGCACGCT                                                                         <  1:221201/71‑1
CGAAAAGAACCCCGGCGAGGGGAGTGAAAAAGAACCTGAAACCGTGTACGTACAAGCAGTGGGAGCACGCT                                                                         >  1:1853355/1‑71
 GAAAAGAACCCCGGCGAGGGGAGTGAAAAAGAACCTGAAACCGTGTACGTACAAGCAGTGGGAGCACGCTT                                                                        <  1:1067535/71‑1
 GAAAAGAACCCCGGCGAGGGGAGTGAAAAAGAACCTGAAACCGTGTACGTACAAGCAGTGGGAGCACGCTT                                                                        <  1:3927338/71‑1
 GAAAAGAACCCCGGCGAGGGGAGTGAAAAAGAACCTGAAACCGTGTACGTACAAGCAGTGGGAGCACGCTT                                                                        <  1:5113872/71‑1
 GAAAAGAACCCCGGCGAGGGGAGTGAAAAAGAACCTGAAACCGTGTACGTACAAGCAGTGGGAGCACGCTT                                                                        <  1:3956850/71‑1
 GAAAAGAACCCCGGCGAGGGGAGTGAAAAAGAACCTGAAACCGTGTACGTACAAGCAGTGGGAGCACGCT                                                                         >  1:3212895/1‑70
 GAAAAGAACCCCGGCGAGGGGAGTGAAAAAGAACCTGAAACCGTGTACGTACAAGCAGTGGGAGCACGCT                                                                         >  1:4333995/1‑70
 GAAAAGAACCCCGGCGAGGGGAGTGAAAAAGAACCTGAAACCGTGTACGTACAAGCAGTGGGAGCACGCT                                                                         >  1:1502935/1‑70
   AAAGAACCCCGGCGAGGGGAGTGAAAAAGAACCTGAAACCGTGTACGTACAAGCAGTGGGAGCACGCT                                                                         >  1:4477769/1‑68
       AACCCCGGCGAGGGGAGTGAAAAAGAACCTGAAACCGTGTACGTACAAGCAGTGGGAGCACGCTT                                                                        <  1:3870131/65‑1
       AACCCCGGCGAGGGGAGTGAAAAAGAACCTGAAACCGTGTACGTACAAGCAGTGGGAGCACGCT                                                                         <  1:2450285/64‑1
           CCGGCGAGGGGAGTGAAAAAGAACCTGAAACCGTGTACGTACAAGCAGTGGGAGCACGC                                                                          <  1:4959191/59‑1
            CGGCGAGGGGAGTGAAAAAGAACCTGAAACCGTGTACGTACAAGCAGTGGGAGCACGC                                                                          <  1:1894549/58‑1
             GGCGAGGGGAGTGAAAAAGAACCTGAAACCGTGTACGTACAAGCAGTGGGAGCACG                                                                           <  1:4771631/56‑1
               CGAGGGGAGTGAAAAAGAACCTGAAACCGTGTACGTACAAGCAGTGGGAGCACGCT                                                                         <  1:3170560/56‑1
               CGAGGGGAGTGAAAAAGAACCTGAAACCGTGTACGTACAAGCAGTGGGAGCACGCT                                                                         <  1:543836/56‑1
                   GGGAGTGAAAAAGAACCTGAAACCGTGTACGTACAAGCAGTGGGAGCACGCT                                                                         <  1:4795368/52‑1
                        TGAAAAAGAACCTGAAACCGTGTACGTACAAGCAGTGGGAGCACGCTT                                                                        <  1:4317299/48‑1
                        TGAAAAAGAACCTGAAACCGTGTACGTACAAGCAGTGGGAGCACGC                                                                          <  1:113722/46‑1
                          AAAAAGAACCTGAAACCGTGTACGTACAAGCAGTGGGAGCACGCT                                                                         <  1:2322294/45‑1
                          AAAAAGAACCTGAAACCGTGTACGTACAAGCAGTGGGAGCACGCT                                                                         <  1:1577559/45‑1
                          AAAAAGAACCTGAAACCGTGTACGTACAAGCAGTGGGAGCACGCT                                                                         <  1:2213700/45‑1
                            AAAGAACCTGAAACCGTGTACGTACAAGCAGTGGGAGCACGCT                                                                         >  1:4405004/1‑43
                             AAGAACCTGAAACCGTGTACGTACAAGCAGTGGGAGCACGCT                                                                         >  1:390257/1‑42
                                  CCTGAAACCGTGTACGTACAAGCAGTGGGAGCACGCTT                                                                        <  1:4222021/38‑1
                                   CTGAAACCGTGTACGTACAAGCAGTGGGAGCACGC                                                                          <  1:2040461/35‑1
                                    TGAAACCGTGTACGTACAAGCAGTGGGAGCACGCTT                                                                        <  1:2820440/36‑1
                                     GAAACCGTGTACGTACAAGCAGTGGGAGCACGCTT                                                                        <  1:2323268/35‑1
                                               ACGTACAAGCAGTGGGAGCATGCTTAGGCGTACACGGTTTCAGGTTCTTTTTCACTCCCCTCGCCGGGGTT                          >  1:4109530/1‑71
                                                  TACAAGCAGTGGGAGCACGCTTGTACGTACACGGTTTCAGGTTCTTTTTCACTCCCCTCGCCGGGGTTCTT                       <  1:4293112/71‑1
                                                   ACAAGCAGTGGGAGCACGCTTGTACGTACACGGTTTCAGGTTCTTTTTCACTCCCCTCGCCGGGGTTCTTT                      >  1:2738873/1‑71
                                                       GCAGTGGGAGCACGCTTGTACGTACACGGTTTCAGGTTCTTTTTCACTCCCCTCGCCGGGGTTCTTT                      >  1:1716579/1‑67
                                                                    GCTTGTACGTACACGGTTTCAGGTTCTTTTTCACTCCCCTCGCCGGGGTTCTTTTCGCCTTTCCCTCACGG     >  1:3192125/1‑71
                                                                    GCTTGTACGTACACGGTTTCAGGTTCTTTTTCACTCCCCTCGCCGGGGTTCTTTTCGCCTTTCCCTCACGG     >  1:3897236/1‑71
                                                                    GCTTGTACGTACACGGTTTCAGGTTCTTTTTCACTCCCCTCGCCGGGGTTCTTTTCGCCTTTCCCTCACGG     >  1:5131052/1‑71
                                                                    GCTTGTACGTACACGGTTTCAGGTTCTTTTTCACTCCCCTCGCCGGGGTTCTTTTCGCCTTTCCCTCACG      >  1:4486756/1‑70
                                                                    GCTTGTACGTACACGGTTTCAGGTTCTTTTTCACTCCCCTCGCCGGGGTTCTTTTC                    >  1:3852784/1‑56
                                                                    GCTTGTACGTACACGGTTTCAGGTTCTTTTTCACTCCCCTCGCCGGGGTTCTTTTC                    >  1:2502515/1‑56
                                                                    GCTTGTACGTACACGGTTTCAGGTTCTTTTTCACTCCCCTCGCCGGGG                            >  1:1875986/1‑48
                                                                    GCTTGTACGTACACGGTTTCAGGTTCTTTTTCACTCCCCTCGCCGGG                             >  1:923694/1‑47
                                                                    GCTTGTACGTACACGGTTTCAGGTTCTTTTTCACTCCCCTCGCCG                               >  1:292592/1‑45
                                                                     CTTGTACGTACACGGTTTCAGGTTCTTTTTCACTCa                                       >  1:5010047/1‑35
                                                                     CTTGTACGTACACGGTTTCAGGTTCTTTTTCACTCCCCTCGCCGGGGTTCTTTTCGCCTTTCCCTCACGGT    <  1:4041977/71‑1
                                                                     CTTGTACGTACACGGTTTCAGGTTCTTTTTCACTCCCCTCGCCGGGGTTCTTTTCGCCTTTCCCTCACGGT    <  1:2220418/71‑1
                                                                     CTTGTACGTACACGGTTTCAGGTTCTTTTTCACTCCCCTCGCCGGGGTTCTTTTCGCCTTTCCCTCACGGT    <  1:2833066/71‑1
                                                                     CTTGTACGTACACGGTTTCAGGTTCTTTTTCACTCCCCTCGCCGGGGTTCTTTTCGCCTTTCCCTCACGGT    <  1:3559463/71‑1
                                                                     CTTGTACGTACACGGTTTCAGGTTCTTTTTCACTCCCCTCGCCGGGGTTCTTTTCGCCTTTCCCTCACGG     <  1:400286/70‑1
                                                                     CTTGTACGTACACGGTTTCAGGTTCTTTTTCACTCCCCTCGCCGGGGTTCTTTTCGCCTTTCCCTCACGG     >  1:1838435/1‑70
                                                                     CTTGTACGTACACGGTTTCAGGTTCTTTTTCACTCCCCTCGCCGGGGTTCTTTTCGCCTTTCCCTCACGG     >  1:1832540/1‑70
                                                                     CTTGTACGTACACGGTTTCAGGTTCTTTTTCACTCCCCTCGCCGGGGTTCTTTTCGCCTTTCCCTCACGG     <  1:628310/70‑1
                                                                     CTTGTACGTACACGGTTTCAGGTTCTTTTTCACTCCCCTCGCCGGGGTTCTTTT                     >  1:1575945/1‑54
                                                                     CTTGTACGTACACGGTTTCAGGTTCTTTTTCACTCCCCTCGCCGGGGTTCT                        >  1:2994088/1‑51
                                                                      TTGTACGTACACGGTTTCAGGTTCTTTTTCACTCCCCTCGCCGGGGTTCTTTTCGCCT                <  1:4843683/58‑1
                                                                      TTGTACGTACACGGTTTCAGGTTCTTTTTCACTCCCCTCG                                  <  1:3338530/40‑1
                                                                       TGTACGTACACGGTTTCAGGTTCTTTTTCACTCCCCTCGCCGGGGTTCTTTTCGCCTTTCCCTCACGGTAC  >  1:4050276/1‑71
                                                                       TGTACGTACACGGTTTCAGGTTCTTTTTCACTCCCCTCGCCGGGGTTCTTTTCGCCTTTCC            >  1:3112986/1‑61
                                                                       TGTACGTACACGGTTTCAGGTTCTTTTTCACTCCCCTCGCCGGGGTTCTTTTCGCCTTTCC            >  1:3721259/1‑61
                                                                                                                                              
CGAAAAGAACCCCGGCGAGGGGAGTGAAAAAGAACCTGAAACCGTGTACGTACAAGCAGTGGGAGCACGCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AP009048/2727366‑2727295
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcttGTACGTACACGGTTTCAGGTTCTTTTTCACTCCCCTCGCCGGGGTTCTTTTCGCCTTTCCCTCACGGTAC  >  AP009048/2727314‑2727383

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.