New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AP009048 = 293467367 (1.190)4 (0.080) 3/92 NT 6.3% coding (434/1776 nt) fucI L‑fucose isomerase
?AP009048 = 2934691 59 (1.160)coding (452/1776 nt) fucI L‑fucose isomerase

GGCAGCGGCTCTGGCAGCTCACAGCCAGAAAGGCATCCCAGCATTCTCCATTTACGGTCATGACGTTCAGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AP009048/2934602‑2934673
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggaATCGATGTGTCATCGGCATCCTGAACGTCATGACCGTAAATGGAGAATGCTGGGATGCCTTTCTGGCTGT  <  AP009048/2934691‑2934622
                                                                                                                                              
GGCAGCGGCTCTGGCAGCTCACAGCCAGAAAGGCATCCCAGCATTCTCCATTTACGGTCATGACGTTCAG                                                                          >  1:3813064/1‑70
 GCAGCGGCTCTGGCAGCTCACAGCCAGAAAGGCATCCCAGCATTCTCCATTTACGGTCATGACGTTCAGGA                                                                        >  1:4684682/1‑71
 GCAGCGGCTCTGGCAGCTCACAGCCAGAAAGGCATCCCAGCATTCTCCATTTACGGTCATGACGTTCAG                                                                          <  1:1606032/69‑1
 GCAGCGGCTCTGGCAGCTCACAGCCAGAAAGGCATCCCAGCATTCTCCATTTACGGTCATGACGTTCAG                                                                          <  1:1659524/69‑1
   AGCGGCTCTGGCAGCTCACAGCCAGAAAGGCATCCCAGCATTCTCCATTTACGGTCATGACGTTCAG                                                                          <  1:3778047/67‑1
      GGCTCTGGCAGCTCCCAGCCAGAAAGGCATCCCAGCATTCTCCATTTACGGTCATGACGTTCAG                                                                          >  1:2926433/1‑64
      GGCTCTGGCAGCTCACAGCCAGAAAGGCATCCCAGCATTCTCCATTTACGGTCATGACGTTCAGG                                                                         >  1:1676202/1‑65
           TGGCAGCTCACAGCCAGAAAGGCATCCCAGCATTCTCCATTTACGGTCATGACGTTCAGGA                                                                        >  1:3273657/1‑61
                GCTCACAGCCAGAAAGGCATCCCAGCATTCTCCATTTACGGTCATGACGTTCAG                                                                          <  1:1622118/54‑1
                    ACAGCCAGAAAGGCATCCCAGCATTCTCCATTTACGGTCATGACGTTCAGGAATCGATGTGTCATCGGCAT                                                     <  1:1610738/71‑1
                          AGAAAGGCATCCCAGCATTCTCCATTTACGGTCATGACGTTCAGGAATCGATGTGTCATCGGCATCCTG                                                 <  1:1293184/69‑1
                           GAAAGGCATCCCAGCATTCTCCATTTACGGTCATGACGTTCAG                                                                          <  1:2459445/43‑1
                            AAAGGCATCCCAGCATTCTCCATTTACGGTCATGACGTTCAGGAATCGATGTGTCATCGGCATCCTGAA                                               >  1:1623666/1‑69
                              AGGCATCCCAGCATTCTCCATTTACGGTCATGACGTTCAGGA                                                                        >  1:1674971/1‑42
                              AGGCATCCCAGCATTCTCCATTTACGGTCATGACGTTCAGGA                                                                        >  1:3235357/1‑42
                              AGGCATCCCAGCATTCTCCATTTACGGTCATGACGTTCAG                                                                          <  1:1320598/40‑1
                                  ATCCCAGCATTCTCCATTTACGGTCATGACGTTCAGGAATCGATGTGTCATCGGCATCCTG                                                 <  1:2131172/61‑1
                                    CCCAGCATTCTCCATTTACGGTCATGACGTTCAGGA                                                                        >  1:4945370/1‑36
                                                                    AGGAATCGATGTGTCATCGGCATCCTGAACGTCATGACCGTAAATGGAGAATGCTGGGATGCCTTTCTGGC     >  1:691001/1‑71
                                                                    AGGAATCGATGTGTCATCGGCATCCTGAACGTCATGACCGTAAATGGAGAATGCTGGGATGCCTTTCTG       <  1:3960443/69‑1
                                                                    AGGAATCGATGTGTCATCGGCATCCTGAACGTCATGACCGTAAATGGAGAATGCTGGGATGCCTTTCT        <  1:2434711/68‑1
                                                                     GGAATCGATGTGTCATCGGCATCCTGAACGTCATGACCGTAAATGGAGAATGCTGGGATGCCTTTCTGGCT    <  1:1717829/71‑1
                                                                      GAATCGATGTGTCATCGGCATCCTGAACGTCATGACCGTAAATGGAGAATGCTGGGATGCCTTTCTGG      >  1:4597727/1‑68
                                                                      GAATCGATGTGTCATCGGCATCCTGAACGTCATGACCGTAAATGGAGAATGCTGGGATGCCTTTCTGG      >  1:238800/1‑68
                                                                      GAATCGATGTGTCATCGGCATCCTGAACGTCATGACCGTAAATGGAGAATGCTGG                   <  1:754847/55‑1
                                                                       AATCGATGTGTCATCGGCATCCTGAACGTCATGACCGTAAATGGAGAATGCTGGGATGCCTTTCTGGCTGT  <  1:1541622/71‑1
                                                                                                                                              
GGCAGCGGCTCTGGCAGCTCACAGCCAGAAAGGCATCCCAGCATTCTCCATTTACGGTCATGACGTTCAGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AP009048/2934602‑2934673
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggaATCGATGTGTCATCGGCATCCTGAACGTCATGACCGTAAATGGAGAATGCTGGGATGCCTTTCTGGCTGT  <  AP009048/2934691‑2934622

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.