| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 3325155 = | 81 (1.440) | 4 (0.080) | 3/90 | NT | 5.3% | coding (1636/1935 nt) | ftsH | protease, ATP‑dependent zinc‑metallo |
| ? | AP009048 | 3325178 = | 71 (1.430) | coding (1613/1935 nt) | ftsH | protease, ATP‑dependent zinc‑metallo | |||||
AGAAGGTGAAGTGTTCCTCGGCCGTAGCGTAGCGAAAGCGAAACATATGTCCGATGAAACTGCACGTATCATCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/3325228‑3325155‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcatcgGACATATGTTTCGCTTTCGCTACGCTACGGCCGAGGAACACTTCACCTTCTTCTTCCGCGTACAGCAGTG > AP009048/3325178‑3325247 AGAAGGTGAAGTGTTCCTCGGCCGTAGCGTAGCGAAAGCGAAACATATGTCCGATGAAACTGCACGTATCA > 1:2712792/1‑71AGAAGGTGAAGTGTTCCTCGGCCGTAGCGTAGCGAAAGCGAAACATATGTCCGATGAAACTGCACGTATCA > 1:588433/1‑71AGAAGGTGAAGTGTTCCTCGGCCGTAGCGTAGCGAAAGCGAAACATATGTCCGATGAAACTGCACGTATCA < 1:4989675/71‑1AGAAGGTGAAGTGTTCCTCGGCCGTAGCGTAGCGAAAGCGAAACATATGTCCGATGAAACTGCACGTATC < 1:5038234/70‑1 TTCCTCGGCCGTAGCGTAGCGAAAGCGAAACATATGTCCGATGAAACTGCACGTATCATCG < 1:1028334/61‑1 TCGGCCGTAGCGTAGCGAAAGCGAAACATATGTCCGATGAAACTGCACGTATC < 1:4671225/53‑1 AAAGCGAAACATATGTCCGATGAAACTGCACGTATCA < 1:3955242/37‑1 CGAAACATATGTCCGATGAAACTGCACGTATCATCG < 1:1206850/36‑1 GAAACATATGTCCGATGAAACTGCACGTATCATCG < 1:4808063/35‑1 GATGAAACTGCACGTATCATCGGACATATGTTTCGCTTTCGC < 1:2592/42‑1 TGAAACTGCACGTATCATCGGACATATGTTTCGCTTTCG > 1:126958/1‑39 TGAAACTGCACGTATCATCGGACATATGTTTCGCTTTCG > 1:580360/1‑39 GCACGTATCATCGGACATATGTTTCGCTTTCGCTACGCTACGGCCGA > 1:1230960/1‑47 TCATCGGACATATGTTTCGCTTTCGCTACGCTACGGCC > 1:1984433/1‑38 ATCGGACATATGTTTCGCTTTCGCTACGCTACGGCCGAGGAACACTTCACCTTCTTCTTCCGCGTACAGCA < 1:1212513/71‑1 ATCGGACATATGTTTCGCTTTCGCTACGCTACGGCCGAGGAACACTTCACCTTCTTCTTCCGCGTACAGC < 1:261137/70‑1 TCGGACATATGTTTCGCTTTCGCTACGCTACGGCCGAGGAACACTTCACCTTCTTCTTCCGCGTACAGCAG < 1:3530583/71‑1 TCGGACATATGTTTCGCTTTCGCTACGCTACGGCCGAGGAACACTTCACCTTCTTCTTCCGCGTA > 1:1975345/1‑65 CGGACATATGTTTCGCTTTCGCTACGCTACGGCCTAGGAACACTTC > 1:638570/1‑46 CGGACATATGTTTCGCTTTCGCTACGCTACGGCCGAGGAACACTTC > 1:310001/1‑46 CGGACATATGTTTCGCTTTCGCTACGCTACGGCCGAGGAACACTTC > 1:841993/1‑46 CGGACATATGTTTCGCTTTCGCTACGCTACGGCCGAGGAACACTTC > 1:113369/1‑46 GGACATATGTTTCGCTTTCGCTACGCTACGGCCGAGGAACACTTCACCTTCTTCTTCCGCGTACAGCAGTG < 1:3400181/71‑1 AGAAGGTGAAGTGTTCCTCGGCCGTAGCGTAGCGAAAGCGAAACATATGTCCGATGAAACTGCACGTATCATCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/3325228‑3325155‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcatcgGACATATGTTTCGCTTTCGCTACGCTACGGCCGAGGAACACTTCACCTTCTTCTTCCGCGTACAGCAGTG > AP009048/3325178‑3325247 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |