| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 3325160 | 81 (1.440) | 6 (0.120) | 4/90 | NT | 7.8% | coding (1631/1935 nt) | ftsH | protease, ATP‑dependent zinc‑metallo |
| ? | AP009048 | = 3325171 | 71 (1.430) | coding (1620/1935 nt) | ftsH | protease, ATP‑dependent zinc‑metallo | |||||
CATATTGTCGGTCAGAAGCTGACGCGCACGATTATAGTTACGCTCAATCAGTGCTTTCACTTCCTGGTCGATGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/3325087‑3325160‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgatgaAACTGCACGTATCATCGACCAGGAAGTGAAAGCACTGATTGAGCGTAACTATAATCGTGCGCGTCAGCT < AP009048/3325171‑3325103 CATATTGTCGGTCAGAAGCTGACGCGCACGATTATAGTTACGCTCAATCAGTGCTTTCACTTCCTGGTCG < 1:4019879/70‑1 TTGTCGGTCAGAAGCTGACGCGCACGATTATAGTTACGCTCAATCAGTGCTTTCACTTCCTGGTCGATGA > 1:767660/1‑70 GGTCAGAAGCTGACGCGCACGATTATAGTTACGCTCAATCAGTGCTTTCACTTCCTGGTCGATGA < 1:2102444/65‑1 TCAGAAGCTGACGCGCACGATTATAGTTACGCTCAATCAGTGCTTTCACTTCCTGGTCGAT < 1:5049718/61‑1 CAGAAGCTGACGCGCACGATTATAGTTACGCTCAATCAGTGCTTTCACTTCCTGGTCGA > 1:4061996/1‑59 AGCTGACGCGCACGATTATAGTTACGCTCAATCAGTGCTTTCACTTCCTGGTCGATGAAACTGCACGTAT > 1:40716/1‑70 AGCTGACGCGCACGATTATAGTTACGCTCAATCAGTGCTTTCACTTCCTGGTCGATGAAACTGCACGTAT > 1:3429663/1‑70 GACGCGCACGATTATAGTTACGCTCAATCAGTGCTTTCACTTCCTGGTCGAT < 1:3653857/52‑1 CGCGCACGATTATAGTTACGCTCAATCAGTGCTTTCACTTCCTGGTCGATGA > 1:2245857/1‑52 CGCACGATTATAGTTACGCTCAATCAGTGCTTTCACTTCCTGGTCGATGAAACTGCACGTATCAT < 1:3911114/65‑1 GATTATAGTTACGCTCAATCAGTGCTTTCACTTCCTGGTCGA < 1:3389140/42‑1 TTATAGTTACGCTCAATCAGTGCTTTCACTTCCTGGTCGATGAAACTGCACGTATCAT > 1:2613994/1‑58 TTACGCTCAATCAGTGCTTTCACTTCCTGGTCGATGAAACTGCACGTATCA < 1:2896047/51‑1 TTACGCTCAATCAGTGCTTTCACTTCCTGGTCGATGAAACTGCACGTATCA < 1:2537611/51‑1 CGATGAAACTGCACGTATCATCGACCAGGAAGTGAAAGCACTGATTGAGCGTAACTATAATCGTGCGCGT > 1:1448695/1‑70 CGATGAAACTGCACGTATCATCGACCAGGAAGTGAAAGCACTGATTGAGCGTAACTATAATCGTGCGCGT > 1:4769531/1‑70 ATGAAACTGCACGTATCATCGACCAGGAAGTGAAAGCACTGATTGAGCGTAACTAT < 1:4309333/56‑1 TGAAACTGCACGTATCATCGACCTGGAAGTGAAAGCACTGATTGAGCGTAACTATAATCGTGCGCGTCAGC < 1:1164997/71‑1 TGAAACTGCACGTATCATCGACCAGGAAGTGAAAGCACTGATTGAGCGTAACTATAATCGTGCGCGTCAGC < 1:2119592/71‑1 TGAAACTGCACGTATCATCGACCAGGAAGTGAAAGCACTGATTGAGCGTAACTATAATCGTGCGCGTCAGC > 1:62888/1‑71 TGAAACTGCAAGTATCATCGACCAGGAAGTGAAAGCGCTGATTGAGCGTAACTATAATCGTGCGCGTCAGC > 1:618853/1‑71 TGAAACTGAACGTATCATCGACCAGGAAGTGAAAGCACTGATTGAGCGTAACTATAATCGTGCGCGTCAG > 1:3773135/1‑70 AAACTGCACGTATCATCGACCAGGAAGTGAAAGCACTGATTGAGCGTAACTATAATCGTGCGCGTCAGCT > 1:2422112/1‑70 AAACTGCACGTATCATCGACCAGGAAGTGAAAGCACTGATTGAGCGTAACTATAATCGTGCGCGTCAGCT < 1:4314611/70‑1 AAACTGCACGTATCATCGACCAGGAAGTGAAAGCACTGATTGAGCGTAACT < 1:2426426/51‑1 CATATTGTCGGTCAGAAGCTGACGCGCACGATTATAGTTACGCTCAATCAGTGCTTTCACTTCCTGGTCGATGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/3325087‑3325160‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgatgaAACTGCACGTATCATCGACCAGGAAGTGAAAGCACTGATTGAGCGTAACTATAATCGTGCGCGTCAGCT < AP009048/3325171‑3325103 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |