| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 3568734 | 29 (0.520) | 3 (0.060) | 3/90 | NT | 10.4% | coding (1330/2037 nt) | yihQ | alpha‑glucosidase |
| ? | AP009048 | = 3568756 | 26 (0.520) | coding (1352/2037 nt) | yihQ | alpha‑glucosidase | |||||
GTCAGTGCCGAAATTATGCATAACGCCTGGCCTGCGCTGTGGGCGAAGTGTAACTACGAAGCCCTTGAAGAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/3568662‑3568734‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagaaaAGGATCTCGCCGAGCTTGCCCGTTTCTTCAAGGGCTTCGTAGTTACACTTCGCCCACAGCGCAGG < AP009048/3568756‑3568692 GTCAGTGCCGAAATTATGCATAACGCCTGGCCTGCGCTGTGGGCGAAGTGTAACTACGAAGCCCTTGAAGA < 1:66026/71‑1 TCAGTGCCGAAATTATGCATAACGCCTGGCCTGCGCTGTGGGCGAAGTGTAACTACGAAGCCCTTGAAGAA < 1:2825783/71‑1 AGTGCCGAAATTATGCATAACGCCTGGCCTGCGCTGTGGGCGAAGTGTAACTACGAAGCCCTTGAAGA < 1:3641234/68‑1 TGCCGAAATTATGCATAACGCCTGGCCTGCGCTGTGGGCGAAGTGTAACTACGAAGCCCTTGAAGAA < 1:4583186/67‑1 CGCCTGGCCTGCGCTGTGGGCGAAGTGTAACTACGCAGCCCTTGAAGAAA > 1:4168233/1‑50 CCTGCGCTGTGGGCGAAGTGTAACTACGAAGCCCTTGAAGAAAAGGATCTCGCCGAGCTTGCCCGTTTC < 1:3156478/69‑1 TGCGCTGTGGGCGAAGTGTAACTACGAAGCCCTTGAAGAAAAGGATCTCGCCGAGCTTGCCCGTTTCTTC < 1:3416444/70‑1 GCTGTGGGCGAAGTGTAACTACGAAGCCCTTGAAGAAAAGGATCTCGCCGAGCTTGCCCGTTTCTTCA > 1:4964538/1‑68 AAGAAAAGGATCTCGCCGAGCTTGCCCGTTTCTTCAAGGGCTTCGTAGTTACACTTCGCCCACAGCGCAGG > 1:3828661/1‑71 AAGAAAAGGATCTCGCCGAGCTTGCCCGTTTCTTCAAGGGCTT < 1:3119054/43‑1 AGAAAAGGATCTCGCCGAGCTTGCCCGTTTCTTCACGGGCTTCGTAGTTACACTTCGCCCACAGCGCAGG > 1:2024156/1‑70 AGAAAAGGATCTCGCCGAGCTTGCCCGTTTCTTCAAGGGCTTCGTAGTTACACTTCGCCCGCAGCGCAGG > 1:21387/1‑70 AGAAAAGGATCTCGCCGAGCTTGCCCGTTTCTTCAAGGGCTTCGTAGTTACACTTCGCCCACA > 1:1041368/1‑63 AGAAAAGGATCTCGCCGAGCTTGCCCGTTTCTTCAAGGGCTTCGTAGTTACACTTCGCCCACA > 1:396153/1‑63 AAAAGGATCTCCCCGAGCTTGCCCGTTTCTTCAAGGGCTTCGTAGTTACACT > 1:4994758/1‑52 GTCAGTGCCGAAATTATGCATAACGCCTGGCCTGCGCTGTGGGCGAAGTGTAACTACGAAGCCCTTGAAGAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/3568662‑3568734‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagaaaAGGATCTCGCCGAGCTTGCCCGTTTCTTCAAGGGCTTCGTAGTTACACTTCGCCCACAGCGCAGG < AP009048/3568756‑3568692 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |