| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 4140905 = | 77 (1.370) | 6 (0.120) | 4/90 | NT | 8.7% | coding (64/168 nt) | yhfL | conserved secreted peptide |
| ? | AP009048 | 4140935 = | 58 (1.170) | coding (34/168 nt) | yhfL | conserved secreted peptide | |||||
GGGAATGTAAATGAACAAATTTATTAAAGTTGCACTGGTAGGTGCAGTACTGGCTACGTTAACTGCATGTACTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/4140978‑4140905‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtactgCACCTACCAGTGCAACTTTAATAAATTTGTTCATTTACATTCCCTATGTATTATATATTAATTAATA > AP009048/4140935‑4141001 GGGAATGTAAATGAACAAATTTATTAAAGTTGCACTGGTAGGTGCAGTACTGGCTACGTTAACTGCATGT < 1:5082756/70‑1 GGAATGTAAATGAACAAATTTATTAAAGTTGCACTGGTAGGTGCAGTACTGGCTACGTTAACTGCATGTAC < 1:4315012/71‑1 ATGAACAAATTTATTAAAGTTGCACTGGTAGGTGCAGTACTGGCTACGTTAACTGCATGTA < 1:2081905/61‑1 ATTTATTAAAGTTGCACTGGTAGGTGCAGTACTGGCTACGTTAACTGCATGTAC > 1:3445853/1‑54 ACTGGTAGGTGAAGTACTGGCTACGTTAACTGCATGTAC > 1:4331903/1‑39 TGGTAGGTGCAGTACTGGCTACGTTAACTGCATGTACTG < 1:330209/39‑1 GGTAGGTGCAGTACTGGCTACGTTAACTGCATGTA > 1:1077036/1‑35 GGTAGGTGCAGTACTGGCTACGTTAACTGCATGTA > 1:4592187/1‑35 CAGTACTGGCTACGTTAACTGCATGTACTGCACCTACCAGTG‑AACTTTAATAAATTTGTTCATTTACATTC > 1:2396552/1‑71 GTACTGGCTACGTTAACTGCATGTACTGCACCTACCAGTGCAA < 1:2872416/43‑1 GTACTGGCTACGTTAACTGCATGTACTGCACCTACCAGTGCAA < 1:77470/43‑1 ACTGGCTACGTTAACTGCATGTACTGCACCTACCAGTGCAACTTTAATAAATTTGTTCAT < 1:2015999/60‑1 GCTACGTTAACTGCATGTACTGCACCTACCAGTGCAACTTTAATA < 1:2816484/45‑1 GCTACGTTAACTGCATGTACTGCACCTACCAGTGCAACTTTAATA < 1:518561/45‑1 GTACTGCACCTACCAGTGCAACTTTAATAAATTTGTTCATTTACATTCCCTATGTATTATATATTAATTAA > 1:3263584/1‑71 GTACTGCACCTACCAGTGCAACTTTAATAAATTTG < 1:2974633/35‑1 TACTGCACCTACCAGTGCAACTTTAATAAATTTGTTCATTTACATT < 1:4370660/46‑1 TACTGCACCTACCAGTGCAACTTTAATAAATTTGTTCATTTACATT < 1:4581864/46‑1 CTGCACCTACCAGTGCAACTTTAATAAATTTGTTCATTTACATTCCCTATGTATTATATATTAATTAATA < 1:1038874/70‑1 CTGCACCTACCAGTGCAACTTTAATAAATTTGTTCATTTA < 1:3589335/40‑1 TGCACCTACCAGTGCAACTTTAATAAATTTGTTCATTTA < 1:2627876/39‑1 TGCACCTACCAGTGCAACTTTAATAAATTTGTTCATTTA < 1:567568/39‑1 GGGAATGTAAATGAACAAATTTATTAAAGTTGCACTGGTAGGTGCAGTACTGGCTACGTTAACTGCATGTACTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/4140978‑4140905‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtactgCACCTACCAGTGCAACTTTAATAAATTTGTTCATTTACATTCCCTATGTATTATATATTAATTAATA > AP009048/4140935‑4141001 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |