| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 4341777 | 57 (1.010) | 3 (0.060) | 3/90 | NT | 5.2% | intergenic (‑68/+69) | adiC/adiY | arginine:agmatin/DNA‑binding transcriptional activator |
| ? | AP009048 | = 4341787 | 59 (1.190) | intergenic (‑78/+59) | adiC/adiY | arginine:agmatin/DNA‑binding transcriptional activator | |||||
AAGACATAATTAAACTCCTGCGAAGGCGAGCTTCGTGACAATAAATTACGTCATATCATACGCCTGCATTCGATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/4341703‑4341777‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgataATAATTCAACTATCGAATGCAGGCGTATGATATGACGTAATTTATTGTCACGAAGCTCGCCTTCGCAGG < AP009048/4341787‑4341719 AAGACATAATTAAACTCCTGCGAAGGCGAGCTTCGTGACAATAAATTACGTCATATCATACGCCTGCATTC < 1:2115424/71‑1 AGACATAATTAAACTCCTGCGAAGGCGAGCTTCGTGACAATAAATTACGTCATATCATACGCCTGCATTC > 1:914528/1‑70 ACATAATTAAACTCCTGCGAAGGCGAGCTTCGTGACAATAAATTACGTCATATCATACGCCTGCATTCGAT < 1:3424025/71‑1 CTGCGAAGGCGAGCTTCGTGACAATAAATTACGTCATATCATACGCCTGCATTCG < 1:3378710/55‑1 CTGCGAAGGCGAGCTTCGTGACAATAAATTACGTCATATCATACGCCTGCATTCG < 1:837498/55‑1 GCGAAGGCGAGCTTCGTGACAATAAATTACGTCATATCATACGCCTGCATTCG > 1:1507782/1‑53 CGAAGGCGAGCTTCGTGACAATAAATTACGTCATATCATACGCCTGCATTCGATAATAATTCAACTATCGA < 1:3619761/71‑1 ATAAATTACGTCATATCATACGCCTGCATTCGATAATAATTCAACTATC < 1:2018537/49‑1 AATTACGTCATATCATACGCCTGCATTCGATAATAATTCAACTA < 1:1586431/44‑1 TCGATAATAATTCAACTATCGAATGCAGGCGTATGATATGACGTAATTTATTGTCACGAAGCTCGCCTTC > 1:3597949/1‑70 TCGATAATAATTCAACTATCGAATGCAGGCGTATGATATGACGTAATTTATTGTCACGAAGCTCGC < 1:388883/66‑1 GATAATAATTCAACTATCGAATGCAGGCGTATGATATGACGTAATTTATTGTCACGAAGCTCGCCTTCGCA < 1:1966281/71‑1 GATAATAATTCAACTATCGAATGCAGGCGTATGATATGACGTAA > 1:2306549/1‑44 ATAATAATTCAACTATCGAATGCAGGCGTATGATATGACGTAATTTATTGTCACGAAGCTCGCCTTCGCAG < 1:1639742/71‑1 ATAATAATTCAACTATCGAATGCAGGCGTATGATATGACGTAATTTATTGTCACGAAGCTCGCCTTCGCAG < 1:2811130/71‑1 ATAATAATTCAACTATCGAATGCAGGCGTATGATATGACGTAATTTATTGTCACGAAGCTCGCCTTCGCAG < 1:4846774/71‑1 ATAATAATTCAACTATCGAATGCAGGCGTATGATATGACGTAATTTATT > 1:4670803/1‑49 TAATAATTCAACTATCGAATGCAGGCGTATGATATGACGTAATTTATTGTCACGAAGCTCGCCTTCGCAGG < 1:413219/71‑1 AATAATTCAACTATCGAATGCAGGCGTATGATATGACGTAATTTATTGTCACGAAGCTCGCCTTCGCAG > 1:1873781/1‑69 AATAATTCAACTATCGAATGCAGGCGTATGATATGACGTAATTTATTGTCACGAAGCTCGCCTTCGCAG > 1:1626263/1‑69 AATAATTCAACTATCGAATGCAGGCGTATGATATGACGTAATTTATTGTCACGAAGCTCGCCTTCGCA > 1:627242/1‑68 AATAATTCAACTATCGAATGCAGGCGTATGATATGACGTAATTTATTGTCACGAAGCTCGCCTTCGCA > 1:353980/1‑68 AAGACATAATTAAACTCCTGCGAAGGCGAGCTTCGTGACAATAAATTACGTCATATCATACGCCTGCATTCGATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/4341703‑4341777‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgataATAATTCAACTATCGAATGCAGGCGTATGATATGACGTAATTTATTGTCACGAAGCTCGCCTTCGCAGG < AP009048/4341787‑4341719 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |