| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 4429786 | 73 (1.300) | 3 (0.060) | 3/92 | NT | 4.0% | intergenic (‑315/‑12) | yjfY/rpsF | hypothetical protein/30S ribosomal subunit protein S6 |
| ? | AP009048 | = 4429805 | 80 (1.580) | coding (8/396 nt) | rpsF | 30S ribosomal subunit protein S6 | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TTCAGCCGACCTTTAACACGTTCCTTGCCTCCCCGGGATTCGGCTGACCCAGACAGGAGGCTGAATAATCCGTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/4429712‑4429786‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgtaaTGACGCATCGAATTGCTCCTTACGGATTATTCAGCCTCCTGTCTGGGTCAGCCGAATCCCGGGGAGGCA < AP009048/4429805‑4429737 TTCAGCCGACCTTTAACACGTTCCTTGCCTCCCCGGGATTCGGCTGACCCAGACAGGAGGCTGAATAATCC > 1:2079261/1‑71 TCAGCCGACCTTTAACACGTTCCTTGCCTCCCCGGGATTCGGCTGACCCAGACAGGAGGCTGAATAATCCG > 1:3145536/1‑71 AGCCGACCTTTAACACGTTCCTTGCCTCCCCGGGATTCGGCTGACCCAGACAGGAGGCTGAATAATCCGT < 1:1620143/70‑1 AGCCGACCTTTAACACGTTCCTTGCCTCCCCGGGATTCGGCTGACCCAGACAGGAGGCTGAATAATCCGT < 1:1747269/70‑1 AGCCGACCTTTAACACGTTCCTTGCCTCCCCGGGATTCGGCTGACCCAGACAGGAGGCTGAATAATCCGT < 1:4733359/70‑1 GCCGACCTTTAACACGTTCCTTGCCTCCCCGGGATTCGGCTGACCCAGACAGGAGGCTGAATAATCCGTAA < 1:902023/71‑1 CGTTCCTTGCCTCCCCGGGATTCGGCTGACCCAGACAGGAGGCTGAATAATCCGTAATGACGCATCGAATT > 1:2592296/1‑71 CCGGGATTCGGCTGACCCAGACAGGAGGCTGAATAATCCGTAATGACGCATCGAATTGCTCCTTACG < 1:3677732/67‑1 GGGATTCGGCTGACCCAGACAGGAGGCTGAATAATCC < 1:4131209/37‑1 CTGACCCAGACAGGAGGCTGAATAATCCGTAATGACGCATCGAATTGCTCCTTACGG > 1:4975732/1‑57 GTAATGACGCATCGAATTGCTCCTTACGGATTATTCAGCCTCCTGTCTGGGTCAGCCGAATCCCGGGGAG < 1:1477711/70‑1 TAATGACGCATCGAATTGCTCCTTACGGATTATTCAGCCTCCTGTCTGGGTCAGCCGAATCCCGGGGAGG < 1:3935381/70‑1 ATGACGCATCGAATTGCTCCTTACGGATTATTCAGCCTCCTGTCTGGGTCAGCCGAATCCCGGGGAGGCA < 1:3741510/70‑1 TTCAGCCGACCTTTAACACGTTCCTTGCCTCCCCGGGATTCGGCTGACCCAGACAGGAGGCTGAATAATCCGTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/4429712‑4429786‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgtaaTGACGCATCGAATTGCTCCTTACGGATTATTCAGCCTCCTGTCTGGGTCAGCCGAATCCCGGGGAGGCA < AP009048/4429805‑4429737 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |