| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 4434708 = | 51 (0.910) | 3 (0.060) | 3/90 | NT | 6.8% | coding (165/1413 nt) | cycA | D‑alanine/D‑serine/glycine transporter |
| ? | AP009048 | 4434730 = | 37 (0.750) | coding (187/1413 nt) | cycA | D‑alanine/D‑serine/glycine transporter | |||||
AAAGCAGCAATTCCCCCATTGCCCGCATCACGAAAAAGAGCATAAAACCAATGATCATATAAACGAAAATGATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/4434781‑4434708‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgatcATTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATTGCTGCTTTCGAATCTGGAATACAAAT > AP009048/4434730‑4434799 AAAGCAGCAATTCCCCCATTGCCCGCATCACGAAAAAGAGCATAAAACCAATGATCATATAAACGAAAATG < 1:4862516/71‑1 AAGCAGCAATTCCCCCATTGCCCGCATCACGAAAAAGAGCATAAAACCAATGATCATATAAACGAAAATGA < 1:2018882/71‑1 AAGCAGCAATTCCCCCATTGCCCGCATCACGAAAAAGAGCATAAAACCAATGATCATATAAACGAAAATGA < 1:4586623/71‑1 CAATTCCCCCATTGCCCGCATCACGAAAAAGAGCATAAAACCAATGATCATATAAACGAAAATGATC > 1:91899/1‑67 CAATTCCCCCATTGCCCGCATCACGAAAAAGAGCATAAAACCAATGATCATATAAACGAAAATGA < 1:832472/65‑1 CAATTCCCCCATTGCCCGCATCACGAAAAAGAGCATAAAACCAATGATCATATAAACGAAAATGA < 1:3105769/65‑1 AATTCCCCCATTGCCCGCATCACGAAAAAGAGCATAAAACCAATGATCATATAATCGAAAATGAT > 1:1203262/1‑65 CCCCCATTGCCCGCATCACGAAAAAGAGCATAAAACCAATGATCATATAAACGAAAATGAT > 1:4126895/1‑61 CCCCCATTGCCCGCATCACGAAAAAGAGCATAAAACCAATGATCATATAAACGAAAATGA > 1:3564241/1‑60 GCCCGCATCACGAAAAAGAGCATAAAACCAATGATCATATAAACGAAAATGA > 1:3120656/1‑52 GCCCGCATCACGAAAAAGAGCATAAAACCAATGATCATATAAACGAAAA > 1:5107976/1‑49 CCCGCATCACGAAAAAGAGCATAAAACCAATGATCATATAAACGAAAATGA < 1:4901626/51‑1 CGCATCACGAAAAAGAGCATAAAACCAATGATCATATAAACGAAAATGATC > 1:859990/1‑51 TCACGAAAAAGAGCATAAAACCAATGATCATATAAACGAAAATGATC < 1:35486/47‑1 TCACGAAAAAGAGCATAAAACCAATGATCATATAAACGAAAATG < 1:38810/44‑1 TCACGAAAAAGAGCATAAAACCAATGATCATATAAACGAAAATG < 1:4532555/44‑1 CACGAAAAAGAGCATAAAACCAATGATCATATAAACGAAAATGATC < 1:1543627/46‑1 AGAGCATAAAACCAATGATCATATAAACGAAAATGAT > 1:4482286/1‑37 AGAGCATAAAACCAATGATCATATAAACGAAAATGAT > 1:805904/1‑37 AGCATAAAACCAATGATCATATAAACGAAAATGAT > 1:1728247/1‑35 ATGATCATATAAACGAAAATGATCATTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATGG < 1:5122202/61‑1 TCATATAAACGAAAATGATCATTGGTTTTATGCTCTTT < 1:3368480/38‑1 ATATAAACGAAAATGATCATTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATTG < 1:352861/63‑1 TGATCATTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATTGCTGCTTTCGAA < 1:323162/61‑1 GATCATTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATTGCTGCTTTCGAATCTGGAATAC < 1:675793/70‑1 GATCATTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATTGCTGCTTTCGAATCTG > 1:2164379/1‑64 GATCATTGGTTTTATGCTCTTTTTCGTGATGCGGGCAAT > 1:2676174/1‑39 ATCATTGGTTTTATGCTCTTTTTCGTGATGCGGGC < 1:1434625/35‑1 TCATTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATTGCTGCTTT > 1:3236937/1‑54 TCATTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATTGCTGCT > 1:737032/1‑52 CATTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATTGCTGCTTTCGAATCTGGAATACAAAT > 1:4194090/1‑71 CATTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATTGCTGCTTTCGAATCTGGAATACAAA > 1:4310908/1‑70 CATTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATTG < 1:1828949/46‑1 AAAGCAGCAATTCCCCCATTGCCCGCATCACGAAAAAGAGCATAAAACCAATGATCATATAAACGAAAATGATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/4434781‑4434708‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgatcATTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATTGCTGCTTTCGAATCTGGAATACAAAT > AP009048/4434730‑4434799 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |