| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 925128 | 43 (0.760) | 3 (0.060) | 3/90 | NT | 7.1% | coding (1443/2277 nt) | clpA | ATPase and specificity subunit of ClpA‑ClpP ATP‑dependent serine protease, chaperone activity |
| ? | AP009048 | = 925139 | 41 (0.830) | coding (1454/2277 nt) | clpA | ATPase and specificity subunit of ClpA‑ClpP ATP‑dependent serine protease, chaperone activity | |||||
TGCTGGTCTTCGGTCAGGATAAAGCCATTGAGGCGCTGACTGAAGCCATTAAGATGGCGCGTGCAGGTTTAGGTCACGAACATAAACCGGTTGGTTCGTTCCTGTTTGCCGGCCCTACCGGGGTCGGGAAAACAGAGGT > AP009048/925058‑925196 | tGCTGGTCTTCGGTCAGGATAAAGCCATTGAGGCGCTGACTGAAGCCATTAAGATGGCGCGTGCAGGTTTA < 1:1117140‑M1/71‑1 (MQ=255) gCTGGTCTTCGGTCAGGATAAAGCCATTGAGGCGCTGACTGAAGCCATTAAGATGGCGCGTGCAGGTTTAg > 1:2347842/1‑71 (MQ=255) gTCTTCGGTCAGGATAAAGCCATTGAGGCGCTGACTGAAGCCATTAAGATGGCGCGTGCAGGTTTAGGt < 1:1594674/69‑1 (MQ=255) cTTCGGTCAGGATAAAGCCATTGAGGCGCTGACTGAAGCCATTAAGATGGCGCGTGCAGGTTTAGGTCAc > 1:2838076/1‑70 (MQ=255) ttCGGTCAGGATAAAGCCATTGAGGCGCTGACTGAAGCCATTAAGATGGCGCGTGCAGGTTTAGGTCACg > 1:3066687/1‑70 (MQ=255) cGGTCAGGATAAAGCCATTGAGGCGCTGACTGAAGCCATTAAGATGGCGCGTGCAGGTTTAGGTCACg < 1:3084520/68‑1 (MQ=255) cGGTCAGGATAAAGCCATTGAGGCGCTGACTGAAGCCATTAAGATGGCGCGTGCAGGTTTAGGTCACGaa > 1:1443485/1‑70 (MQ=255) cAGGATAAAGCCATTGAGGCGCTGACTGAAGCCATTAAGATGGCGCGTGCAGGTTTAGGTCACGAACAta < 1:661357‑M2/70‑3 (MQ=255) aGGATAAAGCCATTGAGGCGCTGACTGAAGCCATTAAGATGGCGCGTGCAGGTTTAGGTCACGAACAtaa > 1:1185217‑M2/1‑67 (MQ=255) aGGATAAAGCCATTGAGGCGCTGACTGAAGCCATTAAGATGGCGCGTGCAGGTTTAGGTCACGAACAtaa > 1:1873022‑M2/1‑67 (MQ=255) tAAAGCCATTGAGGCGCTGACTGAAGCCATTAAGATGGCGCGTGCAGGTTTAGGTCACGAACATAAACCgg > 1:976801/1‑71 (MQ=255) gCCATTGAGGCGCTGACTGAAGCCATTAAGATGGCGCGTGCAGGTTTAGGTCACGAACATAAACCggttgg < 1:3477013/71‑1 (MQ=255) ccATTGAGGCGCTGACTGAAGCCATTAAGATGGCGCGTGCAGGTTTAGGTCACGAACATAAACCg > 1:4478460/1‑65 (MQ=255) ccATTGAGGCGCTGACTGAAGCCATTAAGATGGCGCGTGCAGGTTTAGGTCACGAACATAAACCg > 1:4144393/1‑65 (MQ=255) ttGAGGCGCTGACTGAAGCCATTAAGATGGCGCGTGCAGGTTTAGGTCACGAACATAAACCGGTTGgttcg > 1:4156739/1‑71 (MQ=255) tGAGGCGCTGACTGAAGCCATTAAGATGGCGCGTGCAGGTTTAGGTCACGAACATAAACCGGTTGgttcgt > 1:129288/1‑71 (MQ=255) gAGGCGCTGACTGAAGCCATTAAGATGGCGCGTGCAGGTTTAtgttcgtgacctaaac < 1:4096090‑M1/58‑17 (MQ=255) gAGGCGCTGACTGAAGCCATTAAGATGGCGCGTGCAGGTTTAGGTCACGAACATAAACCGGTTGgttcgtt > 1:4514215/1‑71 (MQ=255) gAGGCGCTGACTGAAGCCATTAAGATGGCGCGTGCAGGTTTAGGTCACGAACATAAACCGGTTGgttcgt < 1:1680792/70‑1 (MQ=255) gAGGCGCTGACTGAAGCCATTAAGATGGCGCGTGCAGGTTTAGGTCACGAACATAAACCGGTTGgttcgt < 1:5020389/70‑1 (MQ=255) aGGCGCTGACTGAAGCCATTAAGATGGCGCGTGCAGGTTTAGGTCACGAACATAAACCGGTTGgttcgttc < 1:691578/71‑1 (MQ=255) ggCGCTGACTGAAGCCATTAAGATGGCGCGTGCAGGTTTAGGTCACGAACATAAACCGGTTGGTTCGTTcc < 1:322747/71‑1 (MQ=255) cgcTGACTGAAGCCATTAAGATGGCGCGTGCAGGTTTAGGTCACGAACATAAACCGGTTGGTTCGTTCCTg < 1:102523/71‑1 (MQ=255) gcTGACTGAAGCCATTAAGATGGCGCGTGCAGGTTTAGGTCACGAACATAAACCGGTTGGTTCGTTCCTGt > 1:4958212/1‑71 (MQ=255) tgactgaAGCCATTAAGATGGCGCGTGCAGGTTTAGGTCACGAACAt < 1:3645942‑M2/47‑2 (MQ=255) actgaAGCCATTAAGATGGCGCGTGCAGGTTTAGGTCACGAACATAAACCGGTTGGTTCGTTCCTGttt < 1:3020495/69‑1 (MQ=255) ctgaAGCCATTAAGATGGCGCGTGCAGGTTTAGGTCACGAACAtaaac < 1:4911400‑M2/48‑6 (MQ=255) ctgaAGCCATTAAGATGGCGCGTGCAGGTTTAGGTCACGAACATAAACCGGTTGGTTCGTTCCTGTTTGcc < 1:4323934/71‑1 (MQ=255) ctgaAGCCATTAAGATGGCGCGTGCAGGTTTAGGTCACGAACATAAACCGGTT‑GTTCGTTCCTGTTTGCCg > 1:3378263/1‑71 (MQ=255) tgaAGCCATTAAGATGGCGCGTGCAGGTTTAGGTCACGAACATAAACCggt < 1:3372943/51‑1 (MQ=255) tgaAGCCATTAAGATGGCGCGTGCAGGTTTAGGTCACGAACATAAACCGGTTGGTTCGTTCCTGTTTGCCg > 1:3978125/1‑71 (MQ=255) gaAGCCATTAAGATGGCGCGTGCAGGTTTAGGTCACGAAc > 1:1444238/1‑40 (MQ=255) aaGCCATTAAGATGGCGCGTGCAGGTTTAGGTCACGAACATAAACCGGTTGGTTCGTTCCTGTTTGCCgg < 1:3978897/70‑1 (MQ=255) aGCCATTAAGATGGCGCGTGCAGGTTTAGGTCACGAACATAAACCGGTTGgttc > 1:2778015/1‑54 (MQ=255) gCCATTAAGATGGCGCGTGCAGGTTTAtgttcgtgacct < 1:4533800‑M1/39‑13 (MQ=255) gCCATTAAGATGGCGCGTGCAGGTTTAGGTCACGAACATAAACCGGTTGGTTCGTTCCTGTTTGCCGGccc > 1:4651003/1‑71 (MQ=255) gCCATTAAGATGGCGCGTGCAGGTTTAGGTCACGAACATAAACCGGTTGGTTCGTTCCTGTTTGCCGGccc > 1:2564356/1‑71 (MQ=255) cATTAAGATGGCGCGTGCAGGTTTAtgttcgtgacctaa > 1:373678‑M1/1‑25 (MQ=255) cATTAAGATGGCGCGTGCAGGTTTAGGTCACGAACATAAACCGGTTGGTTCGTTCCTGTTTGCCGGCCCTa > 1:1597825/1‑71 (MQ=255) aTTAAGATGGCGCGTGCAGGTTTAGGTCACGAACATAAACCGGTTGGTTCGTTCCTGt < 1:2322278/58‑1 (MQ=255) ttAAGATGGCGCGTGCAGGTTTAGGTCACGAACATAAACCggttggtt < 1:4172425/48‑1 (MQ=255) ttAAGATGGCGCGTGCAGGTTTAGGTCACGAACATAAACCGGTTGGTTCGTTCCTGTTTGCCGGCCCTAcc < 1:2926153/71‑1 (MQ=255) aaGATGGCGCGTGCAGGTTTAGGTCACGAACAtaaac < 1:4050682‑M2/37‑6 (MQ=255) aaGATGGCGCGTGCAGGTTTAGGTCACGAACATAAACCgg > 1:4676005/1‑40 (MQ=255) aaGATGGCGCGTGCAGGTTTAGGTCACGAACATAAACCGGTTGGTTCGTTCCTGTTTGCCGGCCCTAcc > 1:3324724/1‑69 (MQ=255) aaGATGGCGCGTGCAGGTTTAGGTCACGAACATAAACCGGTTGGTTCGTTCCTGTTTGCCGGCCCTAc > 1:1060956/1‑68 (MQ=255) aGATGGCGCGTGCAGGTTTAGGTCACGAACATAAACCGGTTGGTTCGTTCCTGTTTGCCGGCCCTACCggg < 1:3145187/71‑1 (MQ=255) gcgTGCAGGTTTAGGTCACGAACATAAACCTGTTGGTTCGTTCCt > 1:5125799/1‑45 (MQ=255) gcgTGCAGGTTTAGGTCACGAACATAAACCGGTTGGTTCGTTCCt > 1:2701174/1‑45 (MQ=255) cgTGCAGGTTTAGGTCACGAACATAAACCGGTTGGTTCGTTCCTGTTTGCCGGCCCTACCGGGGTCGGGaa < 1:1005068/71‑1 (MQ=255) gTGCAGGTTTAGGTCACGAACATAAACCGGTTGGTTCGTTCCTGTTTGCCGGCCCTACCGGGGTCGGGaa > 1:4665873/1‑70 (MQ=255) tGCAGGTTTAGGTCACGAACATAAACCGGTTGGTTCGTTCCTGTTTGCCGGCCCt < 1:282342/55‑1 (MQ=255) aGGTTTAGGTCACGAACATAAACCGGTTGGTTCGTTCCTGTTTGCCg < 1:2417089/47‑1 (MQ=255) aGGTTTAGGTCACGAACATAAACCGGTTGGTTCGTTCCTGTTTGCCGGCCCt < 1:2510186/52‑1 (MQ=255) aGGTTTAGGTCACGAACATAAACCGGTTGGTTCGTTCCTGTTTGCCGGCCCTACCGGGGTCGGGAAAACag < 1:4443634/71‑1 (MQ=255) gTTTAtgttcgtgacctaaacctgcacgcgccatcttaatggcttcag < 1:4911400‑M1/48‑44 (MQ=255) gTTTAtgttcgtgacctaaacctgcacgcgccatctt < 1:4050682‑M1/37‑33 (MQ=255) gTTTAGGTCACGAACAtaaacctgcacgcgccatcttaatggcttcagtcagcgcctc < 1:4096090‑M2/58‑43 (MQ=255) gTTTAGGTCACGAACATAAACCGGTTGGTTCGTTCCTGTTTGCCGGc > 1:3939000/1‑47 (MQ=255) gTTTAGGTCACGAACATAAACCGGTTGGTTCGTTCCTGTTTGCCGGCCCTACCGGGGTCGGGAAAACagag > 1:4449741/1‑71 (MQ=255) ttAtgttcgtgacctaaacctgcacgcgccatcttaatggcttcagtcagcgcctcaatggctttatcct > 1:1873022‑M1/1‑3 (MQ=255) ttAtgttcgtgacctaaacctgcacgcgccatcttaatggcttcagtcagcgcctcaatggctttatcct > 1:1185217‑M1/1‑3 (MQ=255) ttAGGTCACGAACAtaaacctgcacgcgccatcttaatg > 1:373678‑M2/1‑14 (MQ=255) tAtgttcgtgacctaaacctgcacgcgccatcttaatggcttcagtcagcgcctcaatggctttatcctg < 1:661357‑M1/70‑69 (MQ=255) atgttcgtgacctaaacctgcacgcgccatcttaatggcttcagtca < 1:3645942‑M1/47‑47 (MQ=255) aGGTCACGAACAtaaacctgcacgcgccatcttaatggc < 1:4533800‑M2/39‑28 (MQ=255) | TGCTGGTCTTCGGTCAGGATAAAGCCATTGAGGCGCTGACTGAAGCCATTAAGATGGCGCGTGCAGGTTTAGGTCACGAACATAAACCGGTTGGTTCGTTCCTGTTTGCCGGCCCTACCGGGGTCGGGAAAACAGAGGT > AP009048/925058‑925196 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |