| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 950019 | 62 (1.100) | 4 (0.080) | 3/90 | NT | 8.0% | intergenic (‑29/‑71) | ycaN/ycaK | predicted DNA‑binding transcriptional regulator/conserved hypothetical protein |
| ? | AP009048 | = 950033 | 37 (0.750) | intergenic (‑43/‑57) | ycaN/ycaK | predicted DNA‑binding transcriptional regulator/conserved hypothetical protein | |||||
CGGCAAAGAAAGTGGCAAAGTCAGACATATTCATCCGCATTAGTGAAAATCCTTCATTAACTCATCCTGAATCATCACGTTTACAGGATTATGCCGCCTGCGTAAAGTGCGCTCCAGAACTTAACGTGGAGGTAAAA > AP009048/949951‑950087 | cGGCAAAGAAAGTGGCAAAGTCAGACATATTCATCCGCATTAGTGAAAATCCTTCATTAACTCATCCTGaa > 1:1858597/1‑71 (MQ=255)cGGCAAAGAAAGTGGCAAAGTCAGACATATTCATCCGCATTAGTGAAAATCCTTCATTAACTCATACTGaa > 1:4972958/1‑71 (MQ=255) gCAAAGAAAGTGGCAAAGTCAGACATATTCATCCGCATTAGTGAAAATCCTTCATTAACTCATCCTGAat > 1:4004213/1‑70 (MQ=255) cAAAGAAAGTGGCAAAGTCAGACATATTCATCCGCATTAGTGAAAATCCTTCATTAACTCATCCTGAatca > 1:1473579/1‑71 (MQ=255) aagaaagTGGCAAAGTCAGACATATTCATCCGCATTAGTGAAAATCCTTCATTAACTCATCCTGAatcat > 1:975258/1‑70 (MQ=255) aagaaagTGGCAAAGTCAGACATATTCATCCGCATTAGTGAAAATCCTTCATTAACTCATCCTGAatcat > 1:1383837/1‑70 (MQ=255) agaaagTGGCAAAGTCAGACATATTCATCCGCATTAGTGAAAATCCTTCATTAACTCATCCTGAAtcatca > 1:1445127/1‑71 (MQ=255) agaaagTGGCAAAGTCAGACATATTCATCCGCATTAGTGAAAATCCTTCATTAACTCATCCTGAAtcatca < 1:3582196/71‑1 (MQ=255) agTGGCAAAGTCAGACATATTCATCCGCATTAGTGAAAATCCTTCATTAACTCATCCTGAATCATCACGtt > 1:5056962/1‑71 (MQ=255) tGGCAAAGTCAGACATATTCATCCGCATTAGTGAAAATCCTTCATTAACTCATCCTGAATCATCACGTTTa < 1:137697/71‑1 (MQ=255) tGGCAAAGTCAGACATATTCATCCGCATTAGTGAAAATCCTTCATTAACTCATCCTGAATCATCACGTTTa < 1:4156200/71‑1 (MQ=255) ggCAAAGTCAGACATATTCATCCGCATTAGTGAAAATCCTTCATTAACTCATCCTGAATCATCACGTTTa < 1:1310422/70‑1 (MQ=255) ggCAAAGTCAGACATATTCATCCGCATTAGTGAAAATCCTTCATTAACTCATCCTGAATCATCACGTTTa < 1:74961/70‑1 (MQ=255) ggCAAAGTCAGACATATTCATCCGCATTAGTGAAAATCCTTCATTAACTCATCCTGAATCATCACGTTTa < 1:3220277/70‑1 (MQ=255) gCAAAGTCAGACATATTCATCCGCATTAGTGAAAATCCTTCATTAACTCATCCTGAatca > 1:849708/1‑60 (MQ=255) gCAAAGTCAGACATATTCATCCGCATTAGTGAAAATCCTTCATTAACTCATCCTGAATCATCACGtt < 1:2077787/67‑1 (MQ=255) gCAAAGTCAGACATATTCATCCGCATTAGTGAAAATCCTTCATTAACTCATCCTGAATCATCACGtt < 1:1942965/67‑1 (MQ=255) cAAAGTCAGACATATTCATCCGCATTAGTGAAAATCCTTCATTAACTCATCCTGtaaacgtgatgattcag < 1:2549069‑M1/71‑18 (MQ=255) aaaGTCAGACATATTCATCCGCATTAGTGAAAATTCTTCATTAACTCATCCTGAATCATCACg < 1:1437617/63‑1 (MQ=255) aGTCAGACATATTCATCCGCATTAGTGAAAATCCTTCATTAACTCATCCTGAATCATCACGTTTAcagga < 1:2930297‑M2/70‑6 (MQ=255) gTCAGACATATTCATCCGCATTAGTGAAAATCCTTCATTAACTCATCCTGAATCATCACGTTTACAGGAtt < 1:5033836/71‑1 (MQ=255) tCAGACATATTCATCCGCATTAGTGAAAATCCTTCATTAACTCATCCTGAATCATCACGTTTACAGGATTa < 1:5178326/71‑1 (MQ=255) tCAGACATATTCATCCGCATTAGTGAAAATCCTTCATTAACTCATCCTGAATCATCACGTTTACAGGATTa < 1:4922874/71‑1 (MQ=255) tCAGACATATTCATCCGCATTAGTGAAAATCCTTCATTAACTCATCCTGAAACATCACGTTTACAGGATTa < 1:856261/71‑1 (MQ=255) gACATATTCATCCGCATTAGTGAAAATCCTTCATTAACTCATCCTGAATCATCACGTTTACAGGATTATgc < 1:1030905/71‑1 (MQ=255) atatTCATCCGCATTAGTGAAAATCCTTCATTAACTCATCCTGAat > 1:4624876/1‑46 (MQ=255) atatTCATCCGCATTAGTGAAAATCCTTCATTAACTCATCCTGAATCATCACGTTTACAGGATTATgccgc < 1:3113760/71‑1 (MQ=255) atatTCATCCGCATTAGTGAAAATCCTTCATTAACTCATCCTGAATCATCACGTTTACAGGATTATgccgc > 1:2937379/1‑71 (MQ=255) atatTCATCCGCATTAGTGAAAATCCTTCATTAACTCATCCTGAATCATCACGTTTACAGGATTATgccgc > 1:2277371/1‑71 (MQ=255) atatTCATCCGCATTAGTGAAAATCCTTCATTAACTCATCCTGAATCATCACGTTTACAGGATTATgccgc < 1:2188139/71‑1 (MQ=255) tatTCATCCGCATTAGTGAAAATCCTTCATTAACTCATCCTGAATCATCACGTTTACAGGATTATgccgcc < 1:2387170/71‑1 (MQ=255) atTCATCCGCATTAGTGAAAATCCTTCATTAACTCATCCTGAATCATCACGTTTa > 1:3408344/1‑55 (MQ=255) ttCATCCGCATTAGTGATAATCATTCATTAAGTCTTCCTGAATCTTCAc < 1:405354/49‑1 (MQ=25) tCATCCGCATTAGTGAAAATCCTTCATTAACTCATCCTGtaaacgtgatgattcaggat < 1:2329107‑M1/59‑21 (MQ=255) tCATCCGCATTAGTGAAAATCCTTCATTAACTCATCCTGAATCATCACGttt < 1:370824/52‑1 (MQ=255) tCATCCGCATTAGTGAAAATCCTTCATTAACTCATCCTGAATCATCACGTTTACAGGATTATGCCGCCTGc > 1:13135/1‑71 (MQ=255) aTCCGCATTAGTGAAAATCCTTCATTAACTCATCCTGtaaacgtgatgattcaggatga > 1:2986809‑M1/1‑37 (MQ=255) aTCCGCATTAGTGAAAATCCTTCATTAACTCATCCTGAATCATCACGTTTACAGGATTATGCCGCCTGCg > 1:4172054/1‑70 (MQ=255) aTCCGCATTAGTGAAAATACTTCATTAACTCATCCTGtaaacgtgatgattcaggatga > 1:61124‑M1/1‑37 (MQ=255) tCCGCATTAGTGAAAATCCTTCATTAACTCATCCTGAATCATCACGTTTACAGGATTATGCCGCCTGCGTa < 1:3918079/71‑1 (MQ=255) ccGCATTAGTGAAAATCCTTCATTAACTCATCCTGAATCATCACGTTTACAGGATTa > 1:582525/1‑57 (MQ=255) ccGCATTAGTGAAAATCCTTCATTAACTCATCCTGAATCATCACGTTTACAGGATTATg < 1:2325257/59‑1 (MQ=255) ccGCATTAGTGAAAATCCTTCATTAACTCATCCTGAATCATCACGTTTACAGGATTATGCCGCCTGCGTa > 1:1472377/1‑70 (MQ=255) cGCATTAGTGAAAATCCTTCATTAACTCATCCTGAATCATCACGTTTACAGGATTATGCCGCCTGCGTa > 1:4854084/1‑69 (MQ=255) cGCATTAGTGAAAATCCTTCATTAACTCATCCTGAATCATCACGTTTACAGGATTATGCCGCCTGCGTa > 1:4391110/1‑69 (MQ=255) ttAGTGAAAATCCTTCATTAACTCATCCTGAATCATCACGTTTa < 1:1879108/44‑1 (MQ=255) ttAGTGAAAATCCTTCATTAACTCATCCTGAATCATCACGTTTAcag < 1:4530875‑M2/47‑4 (MQ=255) ttAGTGAAAATCCTTCATTAACTCATCCTGAATCATCACGTTTACAGGATTa < 1:2132611/52‑1 (MQ=255) gTGAAAATCCTTCATTAACTCATCCTGAATCATCACGTTTACAGGATTa > 1:2756912/1‑49 (MQ=255) gTGAAAATCCTTCATTAACTCATCCTGAATCATCACGTTTACAGGATTATg < 1:80647/51‑1 (MQ=255) tGAAAATCCTTCATTAACTCATCCTGAATCATCACGttt < 1:4323027/39‑1 (MQ=255) tGAAAATCCTTCATTAACTCATCCTGAATCATCACGTTTACAGGATTATGCCGCCTGCGTAAAGt > 1:3882405/1‑65 (MQ=255) gAAAATCCTTCATTAACTCATCCTGAATCATCACGTTTACAGGATTATGCCGCCTGCGTAAAGTGCGCTc > 1:3503098/1‑70 (MQ=255) aaaaTCCTTCATTAACTCATCCTGAATCATCACGTTTAc < 1:1954006‑M2/39‑2 (MQ=255) aaaTCCTTCATTAACTCATCCTGAATCATCACGTTTAc < 1:4175072‑M2/38‑2 (MQ=255) aaTCCTTCATTAACTCATCCTGAATCATCACGTTTACAGGATTATGCCGCCTGCGTAAAGTGCGCTCCAGa < 1:873328/71‑1 (MQ=255) tCCTTCATTAACTCATCCTGAATCATCACGTTTACAGGATTATGCCGCCTGCGTAAAGTGCGCTCCAGAAc < 1:4006002/71‑1 (MQ=255) tCCTTCATTAACTCATCCTGAATCATCACGTTTACAGGATTATGCCGCCTGCGTAAAGTGCGCTCCAGAAc > 1:367403/1‑71 (MQ=255) cTTCATTAACTCATCCTGAATCATCACGTTTACAGGATTATgc > 1:2676061/1‑43 (MQ=255) cTTCATTAACTCATCCTGAATCATCACGTTTACAGGATTATgc > 1:3466877/1‑43 (MQ=255) cTTCATTAACTCATCCTGAATCATCACGTTTACAGGATTATGCCGCCTGCGTAAAGTGCGCTCCAGAACtt < 1:4481150/71‑1 (MQ=255) ttCATTAACTCATCCTGAATCATCACGTTTACAGGATTATGCCGCCTGCGTaaa < 1:4114142/54‑1 (MQ=255) tCATTAACTCATCCTGAATCATCACGTTTACAGGATTATGCCGCCTGCGTAAAGTGCGCTCCAGAACTTaa > 1:4499296/1‑71 (MQ=255) cATTAACTCATCCTGAATCATCACGTTTACAGGATTATGCCGCCTTCGTAAAGTGCGCTCCAGAACTTAAc > 1:922651/1‑71 (MQ=255) aTTAACTCATCCTGAATCATCACGTTTACAGGATTAt < 1:2562597/37‑1 (MQ=255) aTTAACTCATCCTGAATCATCACGTTTACAGGATTATGCCGCCTGCGTAAAGTGCGCTCCAGAACTTa < 1:4005459/68‑1 (MQ=255) aTTAACTCATCCTGAATCATCACGTTTACAGGATTATGCCGCCTGCGTAAAGTGCGCTCCAGAACTTAACg > 1:3276589/1‑71 (MQ=255) ttAACTCATCCTGAATCATCACGTTTACAGGATTATGCCGCCTGCGTAAAGTGCGCTc < 1:208414/58‑1 (MQ=255) ttAACTCATCCTGAATCATCACGTTTACAGGATTATGCCGCCTGCGTAAAGTGCGCTCCAGAACTTAACGt < 1:2421403/71‑1 (MQ=255) ttAACTCATCCTGAATCATCACGTTTACAGGATTATGCCGCCTGCGTAAAGTGCGCTCCAGAACTTAACGt < 1:2953738/71‑1 (MQ=255) ttAACTCATCCTGAATCATCACGTTTACAGGATTATGCCGCCTGCGTAAAGTGCGCTCCAGAACTTAACGt < 1:2317768/71‑1 (MQ=255) aCTCATCCTGAATCATCACGTTTACAGGATTATGCCGCCTGCGTAAAGTGCGCTCCAGAACTTAACGTgg < 1:2701401/70‑1 (MQ=255) aCTCATCCTGAATCATCACGTTTACAGGATTATGCCGCCTGCGTAAAGTGCGCTCCAGAACTTAACGTgg < 1:4216985/70‑1 (MQ=255) aCTCATCCTGAATCATCACGTTTACAGGATTATGCCGCCTGCGTAAAGTGCGCTCCAGAACTTAACGTgg < 1:3475945/70‑1 (MQ=255) aCTCATCCTGAATCATCACGTTTACAGGATTATGCCGCCTGCGTAAAGTGCGCTCCAGAACTTAACGTg < 1:5113944/69‑1 (MQ=255) tCATCCTGAATCATCACGTTTAcaggatgagttaatgaagtattttcactaatgcggat > 1:61124‑M2/1‑22 (MQ=255) tCATCCTGAATCATCACGTTTAcaggatgagttaatgaaggattttcactaatgcggat > 1:2986809‑M2/1‑22 (MQ=255) cATCCTGAATCATCACGTTTACAGGATTATGCCGCCCGCGTAAAGTGCGCTCCAGAACTTAACGTGGAgg > 1:2549148/1‑70 (MQ=255) aTCCTGAATCATCACGTTTAcaggatgagttaatgaaggattttcactaatgcggatga < 1:2329107‑M2/59‑40 (MQ=255) tCCTGtaaacgtgatgattcaggatgagttaatgaaggattttcactaatgcggatgaatatgtctgact < 1:2930297‑M1/70‑66 (MQ=255) tCCTGAATCATCACGTTTACAGGATTATGCCGCCTGCTTAAAGTGCGCTCCAg < 1:218098/53‑1 (MQ=255) cTGtaaacgtgatgattcaggatgagttaatgaaggattttcactaa < 1:4530875‑M1/47‑45 (MQ=255) cTGAATCATCACGTTTAcaggatgagttaatgaaggattttcactaatgcggatgaatatgtctgactttg < 1:2549069‑M2/71‑55 (MQ=255) cTGAATCATCACGTTTACAGGATTATGCCGCCTGCGTAAAGTGCGCTCCAGAACTTaa > 1:3137429/1‑58 (MQ=255) cTGAATCATCACGTTTACAGGATTATGCCGCCTGCGTAAAGTGCGCTCCAGAACTTa < 1:1748153/57‑1 (MQ=255) gtaaacgtgatgattcaggatgagttaatgaaggatttt < 1:1954006‑M1/39‑39 (MQ=255) gtaaacgtgatgattcaggatgagttaatgaaggattt < 1:4175072‑M1/38‑38 (MQ=255) | CGGCAAAGAAAGTGGCAAAGTCAGACATATTCATCCGCATTAGTGAAAATCCTTCATTAACTCATCCTGAATCATCACGTTTACAGGATTATGCCGCCTGCGTAAAGTGCGCTCCAGAACTTAACGTGGAGGTAAAA > AP009048/949951‑950087 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |