| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 958005 | 48 (0.850) | 3 (0.060) | 3/88 | NT | 6.0% | intergenic (+129/‑70) | ycaP/serC | conserved inner membrane protein/3‑phosphoserine/phosphohydroxythreonine aminotransferase |
| ? | AP009048 | = 958017 | 52 (1.070) | intergenic (+141/‑58) | ycaP/serC | conserved inner membrane protein/3‑phosphoserine/phosphohydroxythreonine aminotransferase | |||||
ATTTTTGCCCTCAACGGTTTTACTCATTGCGATGTGTGTCACTGAATGATAAAACCGATAGCCACAGGAATAATGTATTACCTGTGGTCGCAATCGATTGACCGCGGGTTAATAGCAACGCAACGTGGTGAGGGGAAA > AP009048/957938‑958075 | aTTTTTGCCCTCAACGGTTTTACTCATTGCGATGTGTGTCACTGAATGATAAAACCGATAGCCACAGGaat < 1:3378447/71‑1 (MQ=255)aTTTTTGCCCTCAACGGTTTTACTCATTGCGATGTGTGTCACTGAATGATAAAACCGATAGCCACAGGaa > 1:4618189/1‑70 (MQ=255) cTCAACGGTTTTACTCATTGCGATGTGTGTCACTGAATGATAAAACCGATAGCCACAGGAATAATGTATTa > 1:4214017/1‑71 (MQ=255) tCAACGGTTTTACTCATTGCGATGTGTGTCACTGAATGATAAAACCGATAGCCACAGGAATAATGTATTAc < 1:2935644‑M2/71‑2 (MQ=255) tCAACGGTTTTACTCATTGCGATGTGTGTCACTGAATGATAAAACCGATAGCCACAGGAATAATGTATTAc < 1:3731762‑M2/71‑2 (MQ=255) tCAACGGTTTTACTCATTGCGATGTGTGTCACTGAATGATAAAACCGATAGCCACAGGAATAATGTATTAc < 1:4995571‑M2/71‑2 (MQ=255) cAACGGTTTTACTCATTGCGATGTGTGTCACTGAATGATAAAACCGATAGCCACAGGAATAATGTATTAcc < 1:580689‑M2/71‑3 (MQ=255) cAACGGTTTTACTCATTGCGATGTGTGTCACTGAATGATAAAACCGATAGCCACAGGAATAATGTATTAcc < 1:5120352‑M2/71‑3 (MQ=255) cAACGGTTTTACTCATTGCGATGTGTGTCACTGAATGATAAAACCGATAGCCACAGGAATAATGTATTAcc < 1:4904385‑M2/71‑3 (MQ=255) cAACGGTTTTACTCATTGCGATGTGTGTCACTGAATGATAAAACCGATAGCCACAGGAATAATGTATTAcc < 1:3739412‑M2/71‑3 (MQ=255) aaaggTTTTACTCATTGCGATGTGTGTCACTGAATGATAAAACCGATAGCCACAGGAATAATGTATTACCt > 1:5162937/4‑71 (MQ=255) aaCGGTTTTACTCATTGCGATGTGTGTCACTGAATGATAAAACCGATAGCCACAGGaa < 1:1069947/58‑1 (MQ=255) aaCGGTTTTACTCATTGCGATGTGTGTCACTGAATGATAAAACCGATAGCCACAGGAATAATGTAt < 1:4075739/66‑1 (MQ=255) aaCGGTTTTACTCATTGCGATGTGTGTCACTGAATGATAAAACCGATAGCCACAGGAATAATGTATTAcct < 1:681989‑M2/71‑4 (MQ=255) aaCGGTTTTACTCATTGCGATGTGTGTCACTGAATGATAAAACCGATAGCCACAGGAATAATGTATTAcct < 1:2300619‑M2/71‑4 (MQ=255) aaCGGTTTTACTCATTGCGATGTGTGTCACTGAATGATAAAACCGATAGCCACAGGAATAATGTATTAc > 1:4891358‑M2/1‑68 (MQ=255) aCGGTTTTACTCATTGCGATGTGTGTCACTGAATGATAAAACCGATAGCCACAGGAATAATGTATTAcctg < 1:4212819‑M2/71‑5 (MQ=255) aCGGTTTTACTCATTGCGATGTGTGTCACTGAATGATAAAACCGATAGCCACAGGAATAATGTATTAcctg < 1:2429804‑M2/71‑5 (MQ=255) cGGTTTTACTCATTGCGATGTGTGTCACTGAATGATAAAACCGATAGCCACAGGAATAATGTATTAcctgt < 1:1170491‑M2/71‑6 (MQ=255) gTTTTACTCATTGCGATGTGTGTCACTGAATGATAAAACCGATAGCCACAGGAATAATGTATTAcctgtgg > 1:182321‑M2/1‑64 (MQ=255) gTTTTACTCATTGCGATGTGTGTCACTGAATGATAAAACCGATAGCCACAGGAATAATGTATTAcctgtgg < 1:2658197‑M2/71‑8 (MQ=255) tttACTCATTGCGATGTGTGTCACTGAATGATAAAACCGATAGCCACAGGAATAATGTAt > 1:938381/1‑60 (MQ=255) tttACTCATTGCGATGTGTGTCACTGAATGATAAAACCGATAGCCACAGGAATAATGTAt > 1:2372413/1‑60 (MQ=255) ttACTCATTGCGATGTGTGTCACTGAATGATAAAACCGATAGCCACAGGAATAATGTATTACCTGTGGTc > 1:2525536/1‑70 (MQ=255) ttACTCATTGCGATGTGTGTCACTGAATGATAAAACCGATAGCCACAGGAATAATGTATTACCTGTGGTCg > 1:806343/1‑71 (MQ=255) cTCATTGCGATGTGTGTCACTGAATGATAAAACCGATAGCCACAGGAATAATGTATTACCTGTGGTCGCaa < 1:1356652/71‑1 (MQ=255) tCATTGCGATGTGTGTCACTGAATGATAAAACCGATAGCCACAGGtaatacattattcc > 1:1999117‑M1/1‑45 (MQ=255) cATTGCGATGTGTGTCACTGAATGATAAAACCGATAGCCACAGGAATAATGTATTACCTGTGGTCGCAATc > 1:4128351/1‑71 (MQ=255) aTTGCGATGTGTGTCACTTAATGATAAAACCGATAGCCACAGGAATAATGTATTACCTGTGGTCGCAATc > 1:3321233/1‑70 (MQ=255) aTTGCGATGTGTGTCACTGAATGATAAAACCGATAGCCACAGGtaatacattattcctgtggct > 1:3596016‑M1/1‑43 (MQ=255) aTTGCGATGTGTGTCACTGAATGATAAAACCGATAGCCACAGGAATAATGTATTAcctgtg < 1:3440232‑M2/61‑7 (MQ=255) aTTGCGATGTGTGTCACTGAATGATAAAACCGATAGCCACAGGAATAATGTATTACCTGTGGTCGCAAt < 1:1610699/69‑1 (MQ=255) aTTGCGATGTGTGTCACTGAATGATAAAACCGATAGCCACAGGAATAATGTATTACCTGTGGTCGCAAt < 1:4843290/69‑1 (MQ=255) aTTGCGATGTGTGTCACTGAATGATAAAACCGATAGCCACAGGAATAATGTATTACCTGTGGTCGCAATc < 1:2061145/70‑1 (MQ=255) aTTGCGATGTGTCTCACTGAATGATAAAACCGATAGCCACAGGAATAATGTATTACCTGTGGTCGCAATc < 1:817783/70‑1 (MQ=255) ttGCGATGTGTGTCACTGAATGATAAAACCGATAGCCACAGGAATAATGTATTACCTGTGGTCGCAATc < 1:846880/69‑1 (MQ=255) ttGCGATGTGTGTCACTGAATGATAAAACCGATAGCCACAGGAATAATGTATTACCTGTGGTCGCAATc < 1:4456156/69‑1 (MQ=255) tGCGATGTGTGTCACTGAATGATAAAACCGATAGCCACAGGAATAATGTATTACCTGTGGTCGCAATCGAt > 1:3739758/1‑71 (MQ=255) tGCGATGTGTGTCACTGAATGATAAAACCGATAGCCACAGGAATAATGTATTACCTGTGGTCGCAATCGAt > 1:3806074/1‑71 (MQ=255) tGCGATGTGTGTCACTGAATGATAAAACCGATAGACACAGGAATAATGTATTACCTGTGGTCGCAATCGAt > 1:2361692/1‑71 (MQ=255) gCGATGTGTGTCACTGAATGATAAAACCGATAGCCACAGGAATAATGTATTACCTGTGGTCGCAATCGAtt > 1:3556336/1‑71 (MQ=255) cGATGTGTGTCACTGAATGATAAAACCGATAGCCACAGGAATAATGTATTACCTGTGGTCGCAATCGATTg < 1:2769995/71‑1 (MQ=255) gATGTGTGTCACTGAATGATAAAACCGATAGCCACAGGAATAATGTATTACCTGTGGTCGCAATCGATTGa > 1:565416/1‑71 (MQ=255) aTGTGTGTCACTGAATGATAAAACCGATAGCCACAGGAATAATGTATTACCTGTGGTCGCAATCGAt > 1:2561168/1‑67 (MQ=255) tgtgtgTCACTGAATGATAAAACCGATAGCCACAGGAATAATGTATTACCTGTGGTCGCAATCGATTGAcc < 1:168746/71‑1 (MQ=255) gtgtCACTGAATGATAAAACCGATAGCCACAGGaataa < 1:1273457/38‑1 (MQ=255) tgtCACTGAATGATAAAACCGATAGCCACAGGAATAATGTATTACCTGTGGTCGCAATCGATTGACCGCgg < 1:2288346/71‑1 (MQ=255) gtCACTGAATGATAAAACCGATAGCCACAGGAATAATGTATTACCTGTGGTCGCAATCGAtt < 1:3524150/62‑1 (MQ=255) gtCACTGAATGATAAAACCGATAGCCACAGGAATAATGTATTACCTGTGGTCGCAATCGATTGACCGCggg > 1:4195407/1‑71 (MQ=255) tCACTGAATGATAAAACCGATAGCCACAGGAATAATGTATTACCTGTGGTCGCAATCGATTGACCGCGGGt < 1:1208741/71‑1 (MQ=255) cACTGAATGATAAAACCGATAGCCACAGGAATAATGt < 1:688629/37‑1 (MQ=255) aCTGAATGATAAAACCGATAGCCACAGGAATAATGTATTACCTGTGGTCGCAATCGATTGACCGCGGGt > 1:1966897/1‑69 (MQ=255) cTGAATGATAAAACCGATAGCCACAGGAATAATGTATTACCTGTGGTCGCAATCGATTGACCGCGGGTTaa < 1:896402/71‑1 (MQ=255) tGAATGATAAAACCGATAGCCACAGGtaatacattatt < 1:147381‑M1/38‑13 (MQ=255) tGAATGATAAAACCGATAGCCACAGGAATAATGTATTACCTGTGGTCGCAATCGATTGACCGCGGGTTaa > 1:1371425/1‑70 (MQ=255) aaTGATAAAACCGATAGCCACAGGAATAATGTATTACCTGTGGTCGCAATCGATTGACCGCgg > 1:4911962/1‑63 (MQ=255) aaTGATAAAACCGATAGCCACAGGAATAATGTATTACCTGTGGTCGCAATCGATTGACCGCGGGTTAATAg > 1:1018696/1‑71 (MQ=255) aTGATAAAACCGATAGCCACAGGAATAATGTATTACCTGTGGTCGCAATCGATTGACCGCGGGTTAATAg > 1:1632716/1‑70 (MQ=255) tGATAAAACCGATAGCCACAGGAATAATGTATTACCTGTGGTCGCAATCGATTGACCGCGGGTTAATAgca < 1:493166/71‑1 (MQ=255) tGATAAAACCGATAGCCACAGGAATAATGTATTACCTGTGGTCGCAATCGATTGACCGCGGGTTAATAgca < 1:154183/71‑1 (MQ=255) tGATAAAACCGATAGCCACAGGAATAATGTATTACCTGTGGTCGCAATCGATTGACCGCGGGTTAATAgc > 1:752589/1‑70 (MQ=255) tGATAAAACCGATAGCCACAGGAATAATGTATTACCTGTGGTCGCAATCGATTGACCGCGGGTTAATAgc > 1:2916819/1‑70 (MQ=255) tAAAACCGATAGCCACAGGAATAATGTATTACCTGTGGTCGCAATCGATTGACCGCGGGTTTATAgcaac > 1:3623652/1‑70 (MQ=255) tAAAACCGATAGCCACAGGAATAATGTATTACCTGTGGTCGCAATCGATTGACCGCGGGTTAATAgcaacg > 1:1259242/1‑71 (MQ=255) tAAAACCGATAGCCACAGGAATAATGTATTACCTGTGGTCGCAATCGATTGACCGCGGGTTAATAgcaacg > 1:2777413/1‑71 (MQ=255) aaaaCCGATAGCCACAGGAATAATGTATTACCTGTGGTCGCAATCGATTGACCGCGGGTTAATAgcaacg > 1:1758396/1‑70 (MQ=255) aaaaCCGATAGCCACAGGAATAATGTATTACCTGTGGTCGCAATCGATTGACCGCGGGTTAATAgcaacg > 1:4662283/1‑70 (MQ=255) aCCGATAGCCACAGGAATAATGTATTACCTGTGGTCGCAATCGATTGACCGCGGGTTAATAgcaacgcaac > 1:1634139/1‑71 (MQ=255) ccGATAGCCACAGGAATAATGTATTACCTGTGGTCGCAATCGATTGACCGCGGGTTAATAgc < 1:3760717/62‑1 (MQ=255) ccGATAGCCACAGGAATAATGTATTACCTGTGGTCGCAATCGATTGACCGCGGGTTAATAGcaacgcaacg > 1:763402/1‑71 (MQ=255) aGCCACAGGAATAATGTATTAcctgtggctatcggttttatcattcagtgacacacatcgcaat > 1:3596016‑M2/1‑21 (MQ=255) gCCACAGGAATAATGTATTACCTGTGGTCGCAATCGATTGACCGCGGGTTAATAGCAACGCAACGTGGTGa < 1:5018111/71‑1 (MQ=255) ccACAGGtaatacattattcctgtggctatcggttttatcattcagtgacacacatcgcaatgagtaaaac < 1:2658197‑M1/71‑65 (MQ=255) ccACAGGtaatacattattcctgtggctatcggttttatcattcagtgacacacatcgcaatgagtaaaac > 1:182321‑M1/1‑7 (MQ=255) cacaGGtaatacattattcctgtggctatcggttttatcattcagtgacacacatcgcaat < 1:3440232‑M1/61‑56 (MQ=255) acaGGtaatacattattcctgtggctatcggttttatcattcagtgacacacatcgcaatgagtaaaaccg < 1:1170491‑M1/71‑67 (MQ=255) caGGtaatacattattcctgtggctatcggttttatcattcagtgacacacatcgcaatgagtaaaaccgt < 1:2429804‑M1/71‑68 (MQ=255) caGGtaatacattattcctgtggctatcggttttatcattcagtgacacacatcgcaatgagtaaaaccgt < 1:4212819‑M1/71‑68 (MQ=255) caGGAATAATGTATTACCTGTGGTCGCAATCGATTGACCGCGGGTTaa < 1:2311252/48‑1 (MQ=255) aGGtaatacattattcctgtggctatcggttttatcattcagtgacacacatcgcaatgagtaaaaccgtt < 1:2300619‑M1/71‑69 (MQ=255) aGGtaatacattattcctgtggctatcggttttatcattcagtgacacacatcgcaatgagtaaaaccgtt < 1:681989‑M1/71‑69 (MQ=255) aGGAATAATGTATTACCTGTGGTCGCAATCGATTGAcc < 1:3573450/38‑1 (MQ=255) aGGAATAATGTATTACCTGTGGTCGCAATCGATTGACCGCggg > 1:672599/1‑43 (MQ=255) aGGAATAATGTATTACCTGTGGTCGCAATCGATTGACCGCGGGTTAATAGCAACGCAACGTGGTGAgggg > 1:3162128/1‑70 (MQ=255) aGGAATAATGTATTACCTGTGGTCGCAATCGATTGACCGCGGGTTAATAGCAACGCAACGTGGTGAGGGGa < 1:60496/71‑1 (MQ=255) aGGAATAATGTATTACCTGTGGTCGCAATCGATTGACCGCGGGTTAATAGCAACGCAACGTGGTGAGGGGa < 1:1984855/71‑1 (MQ=255) ggtaatacattattcctgtggctatcggttttatcattcagtgacacacatcgcaatgagtaaaaccgttg < 1:580689‑M1/71‑70 (MQ=255) ggtaatacattattcctgtggctatcggttttatcattcagtgacacacatcgcaatgagtaaaaccgttg < 1:5120352‑M1/71‑70 (MQ=255) ggtaatacattattcctgtggctatcggttttatcattcagtgacacacatcgcaatgagtaaaaccgttg < 1:4904385‑M1/71‑70 (MQ=255) ggtaatacattattcctgtggctatcggttttatcattcagtgacacacatcgcaatgagtaaaaccgttg < 1:3739412‑M1/71‑70 (MQ=255) ggAATAATGTATTAcctgtggctatcggttttatcattcagtgacacacatcgcaatga > 1:1999117‑M2/1‑14 (MQ=255) ggAATAATGTATTACCTGTGGTCGCAATCGATTGACCGCGGGTTAATAGCAACGCAACGTGGTGAGGGGa > 1:1664471/1‑70 (MQ=255) ggAATAATGTATTACCTGTGGTCGCAATCGATTGACCGCGGGTTAATAGCAACGCAACGTGGTGAGGGGa > 1:3037252/1‑70 (MQ=255) gtaatacattattcctgtggctatcggttttatcattcagtgacacacatcgcaatgagtaaaaccgttga < 1:2935644‑M1/71‑71 (MQ=255) gtaatacattattcctgtggctatcggttttatcattcagtgacacacatcgcaatgagtaaaaccgttga < 1:3731762‑M1/71‑71 (MQ=255) gtaatacattattcctgtggctatcggttttatcattcagtgacacacatcgcaatgagtaaaaccgttga < 1:4995571‑M1/71‑71 (MQ=255) gtaatacattattcctgtggctatcggttttatcattcagtgacacacatcgcaatgagtaaaaccgtt > 1:4891358‑M1/1‑1 (MQ=255) gAATAATGTATTACCTGTGGTCGCAATCGATTGACCGCGGGTTAATAGCAACGCAACgtggt < 1:546014/62‑1 (MQ=255) | ATTTTTGCCCTCAACGGTTTTACTCATTGCGATGTGTGTCACTGAATGATAAAACCGATAGCCACAGGAATAATGTATTACCTGTGGTCGCAATCGATTGACCGCGGGTTAATAGCAACGCAACGTGGTGAGGGGAAA > AP009048/957938‑958075 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |