| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 1209367 = | 23 (0.410) | 28 (0.730) | 20/70 | NT | 66.8% | coding (290/630 nt) | ycfK | hypothetical protein |
| ? | AP009048 | 1211196 = | 12 (0.310) | pseudogene (37/537 nt) | stfE | ECK1143:JW5172:b1157; e14 prophage region; predicted side tail fiber protein fragment | |||||
Only 100 of 160 total aligned reads displayed.
CTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAG > AP009048/1209297‑1209432 | gcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgt > 1:858455‑M1/71‑71 (MQ=255) tgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTgg < 1:297609‑M1/4‑1 (MQ=255) aGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTT < 1:714117‑M1/71‑1 (MQ=255) aGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTT < 1:1768103‑M1/71‑1 (MQ=255) aGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTT < 1:223727‑M1/71‑1 (MQ=255) aGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTT < 1:3625037‑M1/70‑1 (MQ=255) gCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTG < 1:2107560‑M1/71‑1 (MQ=255) gCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTG < 1:4687233‑M1/71‑1 (MQ=255) gCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTG < 1:357470‑M1/71‑1 (MQ=255) ccGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTG < 1:2543684‑M1/70‑1 (MQ=255) atccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTgg < 1:168094‑M1/9‑1 (MQ=255) gCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGA < 1:3775546‑M1/71‑1 (MQ=255) ccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTgg < 1:1443958‑M1/9‑1 (MQ=255) cAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGG > 1:1747156‑M1/1‑68 (MQ=255) cccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGgag > 1:147597‑M1/59‑70 (MQ=255) aaGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTT < 1:1027346‑M1/64‑1 (MQ=255) ccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGgag < 1:2882180‑M1/12‑1 (MQ=255) ataatcCGTTTGGCTATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAG < 1:3198577‑M1/67‑1 (MQ=255) gAATCCGTTTGGCTATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAG < 1:3616605‑M1/71‑1 (MQ=255) gAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAG > 1:4010943‑M1/1‑71 (MQ=255) gAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAG < 1:4044448‑M1/71‑1 (MQ=255) ctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAgg < 1:4211231‑M1/16‑1 (MQ=255) aTCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGc < 1:4521038‑M1/71‑2 (MQ=255) tCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGct < 1:3267520‑M1/71‑3 (MQ=255) gtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAg > 1:4583319‑M1/53‑70 (MQ=255) aaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTgg < 1:2048146‑M1/9‑1 (MQ=255) agcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCa > 1:183352‑M1/48‑67 (MQ=255) agcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAAc > 1:4042820‑M1/48‑71 (MQ=255) gCGATATCAAATCGGATTGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGG < 1:1999068‑M1/54‑1 (MQ=255) gCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcatt < 1:457878‑M1/70‑10 (MQ=255) caggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGtt > 1:3263543‑M1/46‑51 (MQ=255) ggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTg > 1:4889‑M1/44‑51 (MQ=255) gATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCaa < 1:2651775/71‑1 (MQ=255) atatCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacct > 1:410641‑M1/1‑58 (MQ=255) tatCAAATCGGATGGCACTGTGCAAACGGCTCTCG‑AAACCTTGGTTTGGGAGAAGGctctgcattacctgt < 1:3869710‑M1/71‑16 (MQ=255) atgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTgg > 1:3998655‑M1/41‑49 (MQ=255) atCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgt > 1:3821002‑M1/1‑56 (MQ=255) tgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGgag > 1:1370654‑M1/40‑51 (MQ=255) tCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGct < 1:2628656‑M1/57‑3 (MQ=255) tCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGTAAAACTCAATgca < 1:2715210/71‑1 (MQ=255) tCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTT > 1:668736‑M1/1‑45 (MQ=255) gatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGgaga < 1:4161606‑M1/13‑1 (MQ=255) aaaTCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATgcag < 1:5009815/70‑1 (MQ=255) gccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGc > 1:2383337‑M1/36‑54 (MQ=255) gccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCaaaa < 1:2039321‑M1/23‑1 (MQ=255) tCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgt > 1:1304394‑M1/1‑50 (MQ=255) ccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCaa > 1:4658999‑M1/35‑70 (MQ=255) tttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAg < 1:3408387‑M1/18‑1 (MQ=255) tGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctct > 1:2351941‑M1/1‑45 (MQ=255) gCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACa > 1:118060/1‑71 (MQ=255) ttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACAt < 1:2915246‑M1/45‑1 (MQ=255) ttgttatttcttcattatcataaacgTTGGTTTGGGAGAAGGAGCAAAAc > 1:3768560‑M1/27‑50 (MQ=255) cACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCaa > 1:1352117/1‑62 (MQ=255) cACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACAt > 1:248829/1‑71 (MQ=255) cACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAG < 1:2206045‑M1/38‑1 (MQ=255) cACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAG < 1:2983107‑M1/38‑1 (MQ=255) aCTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttcc < 1:1935249‑M1/71‑31 (MQ=255) gttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACAtt > 1:4650394‑M1/25‑70 (MQ=255) ttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACt < 1:172754‑M1/25‑1 (MQ=255) ttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAg > 1:858157‑M1/24‑71 (MQ=255) tgCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAgg < 1:5092510/70‑1 (MQ=255) tgCAAACGGCACTCGAAAACCTTGCTTTGGGAGAAGGctctgcattaccagttggtgtcccggtt > 1:1570672‑M1/1‑37 (MQ=255) atttcttcattttcataaacgTTGGTTTGGGAGAAg > 1:171874‑M1/22‑36 (MQ=255) ttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACg < 1:4361604‑M1/52‑1 (MQ=255) ttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACa > 1:4623490‑M1/17‑60 (MQ=255) ttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACa > 1:897623‑M1/17‑60 (MQ=255) ttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACa > 1:3528075‑M1/17‑60 (MQ=255) aCGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctc > 1:5183949‑M1/1‑32 (MQ=255) aCGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCAc > 1:4008370/1‑71 (MQ=255) aCGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCAc > 1:3192403/1‑71 (MQ=255) tcattttcataaacgTTGGTTTGGGAGAAGGAGCaaaa < 1:2109529‑M1/23‑1 (MQ=255) tcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCAcc < 1:3025117‑M1/56‑1 (MQ=255) tcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCAcc < 1:1055763‑M1/56‑1 (MQ=255) cGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttca < 1:2572469‑M1/71‑41 (MQ=255) cattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACAtt < 1:1010973‑M1/46‑1 (MQ=255) gCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCgg < 1:202976/71‑1 (MQ=255) attttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACgg < 1:2332231‑M1/39‑1 (MQ=255) ctctCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGt > 1:2533551/1‑71 (MQ=255) ttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTa < 1:2655330‑M1/47‑1 (MQ=255) ttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGttt < 1:3689627‑M1/61‑1 (MQ=255) tcGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgtt < 1:4374777‑M1/41‑17 (MQ=255) tcGAAAACCTTGGTTTGGGAGAAGGctctgcattacctg < 1:2419794‑M1/39‑15 (MQ=255) tcGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACAt > 1:615774/1‑54 (MQ=255) cataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTc > 1:588596‑M1/9‑70 (MQ=255) cGAAAACCTTGGTTTGTGAGAAGGctctgcattacctgtt < 1:1297718‑M1/40‑17 (MQ=255) gAAAACCTTGGTTTGGGAGAAGGctctgctttacctgttggtg < 1:2750369‑M1/43‑21 (MQ=255) gAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactcc < 1:4655636‑M1/71‑49 (MQ=255) gAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccact < 1:4630442‑M1/69‑47 (MQ=255) gAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATg > 1:4698373/1‑37 (MQ=255) gAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGttt < 1:4752323/68‑1 (MQ=255) taaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCAt < 1:2560253‑M1/64‑1 (MQ=255) aaaaCCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtg > 1:2826678‑M1/1‑22 (MQ=255) aaaaCCTTGGTTTGGGAGAAGGAGCAAAACTCAATgc < 1:2182789/37‑1 (MQ=255) aaaaCCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAg < 1:5167821/54‑1 (MQ=255) aaaaCCTTGGTTTCGGAGAAGGctctgcattacctgttggtgtcccggttcc < 1:121686‑M1/52‑31 (MQ=255) aaaCCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgc > 1:804262‑M1/1‑21 (MQ=255) aaaCCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgc > 1:4934532‑M1/1‑21 (MQ=255) aacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAg > 1:510565‑M1/5‑70 (MQ=255) aaCCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgc > 1:1362662‑M1/1‑20 (MQ=255) ccTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagcca > 1:1578414‑M1/1‑18 (MQ=255) | CTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAG > AP009048/1209297‑1209432 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |