| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 1209382 | 24 (0.430) | 31 (0.800) | 23/70 | NT | 68.5% | coding (305/630 nt) | ycfK | hypothetical protein |
| ? | AP009048 | = 1211179 | 12 (0.310) | pseudogene (54/537 nt) | stfE | ECK1143:JW5172:b1157; e14 prophage region; predicted side tail fiber protein fragment | |||||
Only 100 of 141 total aligned reads displayed.
AATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGG > AP009048/1209312‑1209451 | ctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAgg < 1:4211231‑M1/16‑1 (MQ=255) aTCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGc < 1:4521038‑M1/71‑2 (MQ=255) tCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGct < 1:3267520‑M1/71‑3 (MQ=255) aaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCaa > 1:1195334‑M1/50‑70 (MQ=255) tGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAAc > 1:4592839/1‑71 (MQ=255) agcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCa > 1:183352‑M1/48‑67 (MQ=255) agcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAAc > 1:4042820‑M1/48‑71 (MQ=255) ggCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcat < 1:632190‑M1/70‑9 (MQ=255) gCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcatt < 1:457878‑M1/70‑10 (MQ=255) gCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTc < 1:2689289/71‑1 (MQ=255) atatCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacct > 1:410641‑M1/1‑58 (MQ=255) atCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgt > 1:3821002‑M1/1‑56 (MQ=255) atCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCaaaa > 1:2958658/1‑63 (MQ=255) tgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGc > 1:4654497‑M1/40‑58 (MQ=255) tCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGct < 1:2628656‑M1/57‑3 (MQ=255) atgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATgcagc > 1:1306824‑M1/38‑71 (MQ=255) aaaTCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgtt > 1:509271‑M1/1‑53 (MQ=255) gccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGc > 1:2383337‑M1/36‑54 (MQ=255) gccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCaaaa < 1:2039321‑M1/23‑1 (MQ=255) tCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgt > 1:1304394‑M1/1‑50 (MQ=255) ccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCaa > 1:4658999‑M1/35‑70 (MQ=255) tttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAg < 1:3408387‑M1/18‑1 (MQ=255) gATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggt < 1:4144240‑M1/66‑20 (MQ=255) gATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacc < 1:2363746‑M1/59‑13 (MQ=255) tGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctct > 1:2351941‑M1/1‑45 (MQ=255) gCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACa > 1:118060/1‑71 (MQ=255) ttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACAt < 1:2915246‑M1/45‑1 (MQ=255) ttgttatttcttcattatcataaacgTTGGTTTGGGAGAAGGAGCAAAAc > 1:3768560‑M1/27‑50 (MQ=255) cACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCaa > 1:1352117/1‑62 (MQ=255) cACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACAt > 1:248829/1‑71 (MQ=255) aCTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttcc < 1:1935249‑M1/71‑31 (MQ=255) gttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGc > 1:2041858‑M1/25‑43 (MQ=255) gttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACAtt > 1:4650394‑M1/25‑70 (MQ=255) gttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACAt < 1:3688337‑M1/45‑1 (MQ=255) cTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccg < 1:1791552‑M1/71‑32 (MQ=255) ttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACt < 1:172754‑M1/25‑1 (MQ=255) ttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAg > 1:858157‑M1/24‑71 (MQ=255) tgtgCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgt > 1:3115595‑M1/1‑39 (MQ=255) tgCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAgg < 1:5092510/70‑1 (MQ=255) tgCAAACGGCACTCGAAAACCTTGCTTTGGGAGAAGGctctgcattaccagttggtgtcccggtt > 1:1570672‑M1/1‑37 (MQ=255) tttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGa > 1:2500088‑M1/21‑70 (MQ=255) aaCGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgt > 1:2640162‑M1/1‑33 (MQ=255) aaCGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCaa > 1:1255347/1‑45 (MQ=255) ttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACa > 1:3528075‑M1/17‑60 (MQ=255) ttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACa > 1:4623490‑M1/17‑60 (MQ=255) ttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACa > 1:897623‑M1/17‑60 (MQ=255) aCGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctc > 1:5183949‑M1/1‑32 (MQ=255) aCGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCAc < 1:1700220/71‑1 (MQ=255) tcattttcataaacgTTGGTTTGGGAGAAGGAGCaaaa < 1:2109529‑M1/23‑1 (MQ=255) tcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCAcc < 1:3025117‑M1/56‑1 (MQ=255) cGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttca < 1:2572469‑M1/71‑41 (MQ=255) cattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACAtt < 1:1010973‑M1/46‑1 (MQ=255) ctctCGAAAACCTTGTTTTGGGAGAAGGctctgcattacctgt < 1:4547043‑M1/43‑16 (MQ=255) ctctCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGt > 1:2533551/1‑71 (MQ=255) ttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTa < 1:2655330‑M1/47‑1 (MQ=255) ttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGttt < 1:3689627‑M1/61‑1 (MQ=255) tcGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgtt < 1:4374777‑M1/41‑17 (MQ=255) tcGAAAACCTTGGTTTGGGAGAAGGctctgcattacctg < 1:2419794‑M1/39‑15 (MQ=255) tcGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACAt > 1:615774/1‑54 (MQ=255) cataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTc > 1:588596‑M1/9‑70 (MQ=255) cGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgt < 1:2252032‑M1/39‑16 (MQ=255) gAAAACCTTGGTTTGGGAGAAGGctctgctttacctgttggtg < 1:2750369‑M1/43‑21 (MQ=255) gAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactcc < 1:4661546‑M1/71‑49 (MQ=255) gAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccact < 1:4353634‑M1/69‑47 (MQ=255) gAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttca < 1:1439597‑M1/63‑41 (MQ=255) gAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATg > 1:4698373/1‑37 (MQ=255) taaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCAt < 1:2560253‑M1/64‑1 (MQ=255) aaaaCCTTGGTTTGGGAGAAGGAGCAAAACTCAATgc < 1:2182789/37‑1 (MQ=255) aaaaCCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAg < 1:5167821/54‑1 (MQ=255) aaaaCCTTGGTTTCGGAGAAGGctctgcattacctgttggtgtcccggttcc < 1:121686‑M1/52‑31 (MQ=255) aaaCCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgc > 1:804262‑M1/1‑21 (MQ=255) aaaCCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgc > 1:4934532‑M1/1‑21 (MQ=255) aaCCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgc > 1:1368555‑M1/1‑20 (MQ=255) acgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTa > 1:3717032‑M1/4‑45 (MQ=255) tGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacag > 1:4461208‑M1/1‑15 (MQ=255) tGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacag > 1:26553‑M1/1‑15 (MQ=255) tGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacag > 1:1243597‑M1/1‑15 (MQ=255) GGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCAt < 1:3520205‑M1/62‑1 (MQ=255) GGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATa < 1:5040220‑M1/63‑1 (MQ=255) gTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggc < 1:1040548‑M1/71‑59 (MQ=255) gTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaaca > 1:2722798‑M1/1‑13 (MQ=255) GTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCa > 1:113379‑M1/1‑51 (MQ=255) tttGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcag > 1:2192623‑M1/1‑12 (MQ=255) TTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATa > 1:4405272‑M1/1‑61 (MQ=255) TTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAg > 1:1082838‑M1/1‑62 (MQ=255) TGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTa < 1:2323728‑M1/41‑1 (MQ=255) GGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGtt > 1:2859934‑M1/1‑70 (MQ=255) GGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTa < 1:445531‑M1/71‑1 (MQ=255) GGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCAt > 1:4001480‑M1/1‑56 (MQ=255) gagaAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgcca < 1:2338241‑M1/59‑53 (MQ=255) GAGAAGGAGCAAAACTCAATGCAGCAACGGCTACAt > 1:1437883‑M1/1‑36 (MQ=255) GAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAg > 1:1973007‑M1/1‑39 (MQ=255) AGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAg < 1:1994309‑M1/56‑1 (MQ=255) GAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCa < 1:4914014‑M1/52‑1 (MQ=255) GAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAg < 1:4390612‑M1/55‑1 (MQ=255) AAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGt > 1:774474‑M1/1‑47 (MQ=255) AAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGAtt < 1:3323706‑M1/71‑1 (MQ=255) AAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGAtt < 1:1372973‑M1/71‑1 (MQ=255) ggctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatg > 1:1051558‑M1/1‑2 (MQ=255) GAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCAt > 1:3966130‑M1/1‑49 (MQ=255) | AATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGG > AP009048/1209312‑1209451 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |