| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 2124135 = | 43 (0.760) | 3 (0.060) | 3/92 | NT | 6.5% | coding (982/1371 nt) | cpsG | phosphomannomutase |
| ? | AP009048 | 2124152 = | 48 (0.950) | coding (965/1371 nt) | cpsG | phosphomannomutase | |||||
ACCAGCAGCCACGGGATCATGCCGCTGTCGCAGTAAGCGAAATCACGGAAGTAATGGTGGGCGCTCATTTCGCCACCATAGATGGCGTCTTCCTTGCGCATACGTTCTTTAATAAAGGCGTGTCCGGTTTTCGACATTA > AP009048/2124065‑2124203 | aCCAGCAGCCACGGGATCATGCCGCTGTCGCAGTAAGCGAAATCACGGAAGTAATGGTGGGCGCTCATTTc < 1:2233281/71‑1 (MQ=255) ccAGCAGCCACGGGATCATGCCGCTGTCGCAGTAAGCGAAATCACGGAAGTAATGGTGGGCGCTCATTTCg > 1:516609/1‑71 (MQ=255) ccAGCAGCCACGGGATCATGCCGCTGTCGCAGTAAGCGAAATCACGGAAGTAATGGTGGGCGCTCATTTCg > 1:3395717/1‑71 (MQ=255) ccAGCAGCCACGGGATCATGCCGCTGTCGCAGTAAGCGAAATCACGGAAGTAATGGTGGGCGCTCATTTCg > 1:1392286/1‑71 (MQ=255) ccAGCAGCCACGGGATCATGCCGCTGTCGCAGTAAGCGAAATCACGGAAGTAATGGTGGGCGCTCATTTCg > 1:3484325/1‑71 (MQ=255) gcaggtggcacgccggtaatgtcgaaaaccggacacgcctttattaaagaacgtatgcgcaaggaagaCGc < 1:1290848‑M1/3‑1 (MQ=255) cagcagCCACGGGATCATGCCGCTGTCGCAGTAAGCGAAATCACGGAAGTAATGGTGGGCGCTCATTTCg < 1:3179276/70‑1 (MQ=255) cagcagCCACGGGATCATGCCGCTGTCGCAGTAAGCGAAATCACGGAAGTAATGGTGGGCGCTCATTTCGc < 1:4265420/71‑1 (MQ=255) cagcagCCACGGGATCATGCCGCTGTCGCAGTAAGCGAAATCACGGAAGTAATGGTGGGCGCTCATTTCGc < 1:1429304/71‑1 (MQ=255) agcagcCACGGGATCATGCCGCTGTCGCAGTAAGCGAAATCACGGAAGTAATGGTGGGCGCTCATTTCGc > 1:1329024/1‑70 (MQ=255) gcagcCACGGGATCATGCCGCTGTCGCAGTAAGCGAAATCACGGAAGTAATGGTGGGCGCTCATTTc < 1:4763450/67‑1 (MQ=255) gcagcCACGGGATCATGCCGCTGTCGCAGTAAGCGAAATCACGGAAGTAATGGTGGGCGCTCATTTCGcca > 1:3381091/1‑71 (MQ=255) gcagcCACGGGATCATGCCGCTGTCGCAGTAAGCGAAATCACGGAAGTAATGGTGGGCGCTCATTTCGcca > 1:864948/1‑71 (MQ=255) cagcCACGGGATCATGCCGCTGTCGCAGTAAGCGAAATCACGGAAGTAATGGTGGGCGCTCATTTCGccac < 1:2979952/71‑1 (MQ=255) ccACGGGATCATGCCGCTGTCGCAGTAAGCGAAATCACGGAAGTAATGGTGGGCGCTCATTTCGcc < 1:2816340/66‑1 (MQ=255) cACGGGATCATGCCGCTGTCGCAGTAAGCGAAATCACGGAAGTAATGGTGGGCGCTCATTTCGCCACCATa < 1:3419524/71‑1 (MQ=255) aCGGGATCATGCCGCTGTCGCAGTAAGCGAAATCACGGAAGTAATGGTGGGCGCTCATTTCGccacca > 1:4667032/1‑68 (MQ=255) aCGGGATCATGCCGCTGTCGCAGTAAGCGAAATCACGGAAGTAATGGTGGGCGCTCATTTCGCCACCATAg < 1:612275/71‑1 (MQ=255) cGGGATCATGCCGCTGTCGCAGTAAGCGAAATCACGGAAGTAATGGTGGGCGCTCATTTCGCCACCATAGa < 1:472985/71‑1 (MQ=255) cGGGATCATGCCGCTGTCGCAGTAAGCGAAATCACGGAAGTAATGGTGGGCGCTCATTTCGCCACCATAGa < 1:1188112/71‑1 (MQ=255) ggATCATGCCGCTGTCGCAGTAAGCGAAATCACGGAAGTAATGGTGGGCGCTCATTTCGCCACCATAGATg > 1:1375782/1‑71 (MQ=255) tCATGCCGCTGTCGCAGTAAGCGAAATCACGGAAGTAATGGTGGGCGCTCATTTCGc > 1:893166/1‑57 (MQ=255) cATGCCGCTGTCGCAGTAAGCGAAATCACGGAAGTAATGGTGGGCGCTCATTTCGCCACCATAGATGGCGt > 1:3538064/1‑71 (MQ=255) tGCCGCTGTCGCAGTAAGCGAAATCACGGAAGTAATGGTGGGCGCTCATTTCGCCACCATAGATGGCGTCt > 1:3493816/1‑71 (MQ=255) ccGCTGTCGCAGTAAGCGAAATCACGGAAGTAATGGTGGGCGCTCATTTCGCCACCATAGATGGCGTCTTc < 1:4689880/71‑1 (MQ=255) ccGCTGTCGCAGTAAGCGAAATCACGGAAGTAATGGTGGGCGCTCATTTCGCCACCATAGATGGCGTCTTc > 1:4414084/1‑71 (MQ=255) cGCTGTCGCAGTAAGCGAAATCACGGAAGTAATGGTGGGCGCTCATTTCGCCACCATAGATGGCGTCTTcc < 1:2540554/71‑1 (MQ=255) gCTGTCGCAGTAAGCGAAATCACGGAAGTAATGGTGGGCGCTCATTTCGCCACCATAGATGGCGTCTTCCt < 1:711786/71‑1 (MQ=255) tCGCAGTAAGCGAAATCACGGAAGTAATGGTGGGCGCTCATTTCGCCACCATAGATGGCGTCTTCCTTgcg < 1:2889396/71‑1 (MQ=255) tCGCAGTAAGCGAAATCACGGAAGTAATGGTGGGCGCTCATTTCGCCACCATAGATGGCGTCTTCCTTgc < 1:485027/70‑1 (MQ=255) tCGCAGTAAGCGAAATCACGGAAGTAATGGTGGGCGCTCATTTCGCCACCATAGATGGCGTCTTCCTTgc < 1:3900934/70‑1 (MQ=255) gCAGTAAGCGAAATCACGGAAGTAATGGTGGGCGCTCATTTCGCCACCATAGATGGCGTCTTCCTTGCGCa > 1:2057358/1‑71 (MQ=255) gCAGTAAGCGAAATCACGGAAGTAATGGTGGGCGCTCATTTCGCCACCATAGATGGCGTCTTCCTTGCGCa > 1:564513/1‑71 (MQ=255) cAGTAAGCGAAATCACGGAAGTAATGGTGGGCGCTCATTTCGCCACCATAGATGGCGTCTTCCTTGCGCa > 1:1147978/1‑70 (MQ=255) cAGTAAGCGAAATCACGGAAGTAATGGTGGGCGCTCATTTCGCCACCATAGATGGCGTCTTCCTTGCGCAt < 1:4218321/71‑1 (MQ=255) aGTAAGCGAAATCACGGAAGTAATGGTGGGCGCTCATTTCGccac > 1:4640588/1‑45 (MQ=255) aGTAAGCGAAATCACGGAAGTAATGGTGGGCGCTCATTTCGccac > 1:570038/1‑45 (MQ=255) aaGCGAAATCACGGAAGTAATGGTGGGCGCTCATTTc > 1:1217800/1‑37 (MQ=255) aaaTCACGGAAGTAATGGTGTGCGCTCATTTCGCCACCATAGATGGCGTCTTCCTTGCGCATACGTTCt < 1:3739197/69‑1 (MQ=255) aTCACGGAAGTAATGGTGGGCGCTCATTTCGCCACCATAGATGGCGTCTTCCTTGCGCATACGTTCTTtaa < 1:136772/71‑1 (MQ=255) aTCACGGAAGTAATGGTGGGCGCTCATTTCGCCACCATAGATGGCGTCTTCCTTGCGCATACGTTCTTtaa < 1:3623751/71‑1 (MQ=255) tattaaagaacgtatgcgcaaggaagaCGCCACCATAGa < 1:4561709‑M1/12‑1 (MQ=255) ggAAGTAATGGTGGGCGCTCATTTCGCCACCATAGATGGCGTCTTCCTTGCGCATACGTTCTTTAATAAAg < 1:3488654/71‑1 (MQ=255) gAAGTAATGGTGGGCGCTCATTTCGCCACCATAGATGGCGTCTTCCTTGCGCATACGTTCTTTAATAAAgg > 1:1804927/1‑71 (MQ=255) aagaacgtatgcgcaaggaagaCGCCACCATAGATg > 1:3039890‑M1/23‑36 (MQ=255) aaGTAATGGTGGGCGCTCATTTCGCCACCATAGATGGCGTCTTCCTTGCGCATACGTTCTTTAATAAAGGc < 1:2616358/71‑1 (MQ=255) aGTAATGGTGGGCGCGCATTTCGCCACCATAGATGGCGTCTTCCTTGCGCATACGTTCTTTAATAAAGGc < 1:1998839/70‑1 (MQ=255) gaacgtatgcgcaaggaagaCGCCACCATAGATGGc < 1:5087983‑M1/16‑1 (MQ=255) gTAATGGTGGGCGCTCATTTCGCCACCATAGATGGCGTCTTCCTTGCGCATACGTTCTTTAATAAAGGCgt < 1:2006686/71‑1 (MQ=255) tAATGGTGGGCGCTCATTTCGCCACCATAGATGGCGTCTTCCTTGCGCATACGTTCTTtaataa < 1:3068736/64‑1 (MQ=255) aTGGTGGGCGCTCATTTCGCCACCATAGATGGCGTCTTCCTTGCGCATACGTTCTTTAATAAAGGc > 1:1889313/1‑66 (MQ=255) aTGGTGGGCGCTCATTTCGCCACCATAGATGGCGTCTTCCTTGCGCATACGTTCTTTAATAAAGGCg > 1:677648/1‑67 (MQ=255) aTGGTGGGCGCTCATTTCGCCACCATAGATGGCGTCTTCCTTGCGCATACGTTCTTTAATAAAGGCGTGTc < 1:1110319/71‑1 (MQ=255) tggtggGCGCTCATTTCGCCACCATAGATGGCGTCTTCCTTGCGCATACGTTCTTTAATAAAGGCGTGTcc > 1:4876867/1‑71 (MQ=255) cgcTCATTTCGCCACCATAGATGGCGTCTTCCTTGCGCATACGTTCTTTAATAAAGGCGTGTCCGGTTTTc < 1:964247/71‑1 (MQ=255) cgcTCATTTCGCCACCATAGATGGCGTCTTCCTTGCGCATACGTTCTTTAATAAAGGCGTGTCCGGTTTTc < 1:4095839/71‑1 (MQ=255) cgcTCATTTCGCCACCATAGATGGCGTCTTCCTTGCGCATACGTTCTTTAATAAAGGCGTGTCCGGTTTTc < 1:30784/71‑1 (MQ=255) cgcTCATTTCGCCACCATAGATGGCGTCTTCCTTGCGCATACGTTCTTTAATAAAGGCGTGTCCGGTTTTc < 1:2724643/71‑1 (MQ=255) gcTCATTTCGCCACCATAGATGGCGTCTTCCTTGCGCATACGTTCTTTAATAAAGGCGTGTCCGGTTTTCg < 1:3381054/71‑1 (MQ=255) cTCATTTCGCCACCATAGATGGCGTCTTCCTTGCGCATACGTTCTTTAATAAAGGCGTGTCCGGtt < 1:288625/66‑1 (MQ=255) tCATTTCGCCACCATAGATGGCGTCTTCCTTGCGCATACGTTCTTtaat < 1:876025/49‑1 (MQ=255) tCATTTCGCCACCATAGATGGCGTCTTCCTTGCGCATACGTTCTTTAATAAAGGCGTGTCCg > 1:4720255/1‑62 (MQ=255) cATTTCGCCACCATAGATGGCGTCTTCCTTGCGCATACGTTCTTTAATAAAGGCGTGTCCGGTTTTCGACa > 1:4212194/1‑71 (MQ=255) cATTTCGCCACCATAGATGGCGTCTTCCTTGCGCATACGTTCTTTAATAAAGGCGTGTCCGGTTTTCGACa > 1:2900603/1‑71 (MQ=255) aTTTCGCCACCATAGATGGCGTCTTCCTTGCGCATACGTTc > 1:1400976/1‑41 (MQ=255) aTTTCGCCACCATAGATGGCGTCTTCCTTGCGCATACGTTCt > 1:1052481/1‑42 (MQ=255) aTTTCGCCACCATAGATGGCGTCTTCCTTGCGCATACGTTCTTTAATAAAGGCGTGTCCGGTTTTCGAc > 1:1623364/1‑69 (MQ=255) aTTTCGCCACCATAGATGGCGTCTTCCTTGCGCATACGTTCTTTAATAAAGGCGTGTCCGGTTTTCGACAt > 1:4312382/1‑71 (MQ=255) aTTTCGCCACCATAGATGGCGTCTTCCTTGCGCATACGTTCTTTAATAAAGGCGTGTCCGGTTTTCGACAt < 1:3407779/71‑1 (MQ=255) aTTTCGCCACCATAGATGGCGTCTTCCTTGCGCATACGTTCTTTAATAAAGGCGTGTCCGGTTTTCGACAt > 1:3667668/1‑71 (MQ=255) aTTTCGCCACCATAGATGGCGTCTTCCTTGCGCATACGTTCTTTAATAAAGGCGTGTCCGGTTTTCGACAt > 1:4318113/1‑71 (MQ=255) tttCGCCACCATAGATGGCGTCTTCCTTGCGCATACGTTCTTTAATAAAGGCgtgt < 1:3376983/56‑1 (MQ=255) ttCGCCACCATAGATGGCGTCTTCCTTGCGCATACGTTCTTTAATAAAGGCGTGTCCGGTTTTCGACATTa > 1:1270223/1‑71 (MQ=255) tCGCCACCATAGATGGCGTCTTCCTTGCGCATACGTTCTTTAATAAAGGCgt > 1:499626/1‑52 (MQ=255) | ACCAGCAGCCACGGGATCATGCCGCTGTCGCAGTAAGCGAAATCACGGAAGTAATGGTGGGCGCTCATTTCGCCACCATAGATGGCGTCTTCCTTGCGCATACGTTCTTTAATAAAGGCGTGTCCGGTTTTCGACATTA > AP009048/2124065‑2124203 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |