| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 2535433 = | 46 (0.820) | 3 (0.060) | 3/88 | NT | 7.6% | coding (190/2016 nt) | ligA | DNA ligase, NAD(+)‑dependent |
| ? | AP009048 | 2535454 = | 33 (0.680) | coding (169/2016 nt) | ligA | DNA ligase, NAD(+)‑dependent | |||||
TCAAAAACGTTATCCAGTGACAGCATTGGTACTTCATGGCGTATCTGGCTGAAAGCCGCCAGCGGCGCAGCGCCTACACGTTGAGTAGGCGAATCAGGCGTAATCAGTTCTGGATGTTTGGTTTCCAGCTCGCGCAGTTCG > AP009048/2535363‑2535503 | tcaAAAACGTTATCCAGTGACAGCATTGGTACTTCATGGCGTATCTGGCTGAAAGCCGCCAGCGGCGCAgc < 1:4072582/71‑1 (MQ=255)tcaAAAACGTTATCCAGTGACAGCATTGGTACTTCATGGCGTATCTGGCTGAAAGCCGCCAGCGGCGCAgc < 1:1570358/71‑1 (MQ=255) tacgacaggctgatgcgcgaactgcgcgagctggaaaccaaacatccagaactgattacgcctgattCGcc < 1:3282746‑M1/4‑1 (MQ=255) aaaCGTTATCCAGTGACAGCATTGGTACTTCATGGCGTATCTGGCTGAAAGCCGCCAGCGGCGCAgcgc > 1:266697/1‑69 (MQ=255) cgacaggctgatgcgcgaactgcgcgagctggaaaccaaacatccagaactgattacgcctgattCGCCTa < 1:2396879‑M1/6‑1 (MQ=255) aaCGTTATCCAGTGACAGCATTGGTACTTCATGGCGTATCTGGCTGAAAGCCGCCAGCGGCGCAGCGCCTa > 1:1737877/1‑71 (MQ=255) caggctgatgcgcgaactgcgcgagctggaaaccaaacatccagaactgattacgcctgattCGCCTacac < 1:315777‑M1/9‑1 (MQ=255) ttATCCAGTGACAGCATTGGTACTTCATGGCGTATCTGGCTGAAAGCCGCCAGCGGCGCAGCGcc < 1:2104041/65‑1 (MQ=255) ttATCCAGTGACAGCATTGGTACTTCATGGCGTATCTGGCTGAAAGCCGCCAGCGGCGCAGCGCCTACACg < 1:3371729/71‑1 (MQ=255) tATCCAGTGACAGCATTGGTACTTCATGGCGTATCTGGCTGAAAGCCGCCAGCGGCGCAGCGCCTACACGt > 1:807842/1‑71 (MQ=255) aTCCAGTGACAGCATTGGTACTTCATGGCGTATCTGGCTGAAAGCCGCCAGCGGCGCAGCGCCTACACGt < 1:4593892/70‑1 (MQ=255) ctgatgcgcgaactgcgcgagctggaaaccaaacatccagaactgattacgcctgattCGCCTACACGTTg > 1:2820352‑M1/59‑71 (MQ=255) cAGTGACAGCATTGGTACTTCATGGCGTATCTGGCTGAAAGCCGCCAGCGGCGCAGCGCCTACACGtt < 1:805488/68‑1 (MQ=255) cAGTGACAGCATTGGTACTTCATGGCGTATCTGGCTGAAAGCCGCCAGCGGCGCAGCGCCTACACGTTGAg > 1:1423525/1‑71 (MQ=255) cAGTGACAGCATTGGTACTTCATGGCGTATCTGGCTGAAAGCCGCCAGCGGCGCAGCGCCTACACGTTGAg < 1:114661/71‑1 (MQ=255) cAGTGACAGCATTGGTACTTCATGGCGTATCTGGCTGAAAGCCGCCAGCGGCGCAGCGCCTACACGTTGAg > 1:1111034/1‑71 (MQ=255) tgcgcgaactgcgcgagctggaaaccaaacatccagaactgattacgcctgattCGc < 1:1955934‑M1/3‑1 (MQ=255) gTGACAGCATTGGTACTTCATGGCGTATCTGGCTGAAAGCCGCCAGCGGCGCAGCGCCTACACGTTGAg > 1:4296671/1‑69 (MQ=255) gTGACAGCATTGGTACTTCATGGCGTATCTGGCTGAAAGCCGCCAGCGGCGCAGCGCCTACACGTTGAGTa < 1:4171560/71‑1 (MQ=255) gACAGCATTGGTACTTCATGGCGTATCTGGCTGAAAGCCGCCAGCGGCGCAGCGCCTACACGTTGAGTAgg > 1:1061155/1‑71 (MQ=255) aCAGCATTGGTACTTCATGGCGTATCTGGCTGAAAGCCGCCAGCGGCGCAGCGCCTACACGTTGAGTa < 1:170702/68‑1 (MQ=255) aCAGCATTGGTACTTCATGGCGTATCTGGCTGAAAGCCGCCAGCGGCGCAGCGCCTACACGTTGAGTAGGc > 1:1837660/1‑71 (MQ=255) actgcgcgagctggaaaccaaacatccagaactgattacgcctgattc < 1:3088026‑M1/1‑1 (MQ=255) aTTGGTACTTCATGGCGTATCTGGCTGAAAGCCGCCAGCGGCGCAGCGCCTACACGTTGAGTAGGCGAAt > 1:3989839/1‑70 (MQ=255) tGGTACTTCATGGCGTATCTGGCTGAAAGCCGCCAGCGGCGCAGCGCCTACACGTTGAGTAGGCGAATCAg > 1:582127/1‑71 (MQ=255) ggTACTTCATGGCGTATCTGGCTGAAAGCCGCCAGCGGCGCAGCGCCTACACGTTGAGTAGGCGAATCAg < 1:2513707/70‑1 (MQ=255) ggTACTTCATGGCGTATCTGGCTGAAAGCCGCCAGCGGCGCAGCGCCTACACGTTGAGTAGGCGAATCAg < 1:884780/70‑1 (MQ=255) aCTTCATGGCGTATCTGGCTGAAAGCCGCAAGCGGCGCAGCGCCTACACGTTGAGTAGGCGAATCAGGCg > 1:2809812/1‑70 (MQ=255) cTTCATGGCGTATCTGGCTGAAAGCCGCCAGCGGCGCAGCGCCTACACGTTGAGTAGGCGAATc < 1:870278/64‑1 (MQ=255) cTTCATGGCGTATCTGGCTGAAAGCCGCCAGCGGCGCAGCGCCTACACGTTGAGTAGGCGAATCAGGCGt < 1:4809260/70‑1 (MQ=255) ttCATGGCGTATCTGGCTGAAAGCCGCCAGCGGCGCAGCGCCTACACGTTGAGTAGGCGAAt > 1:1163797/1‑62 (MQ=255) tCATGGCGTATCTGGCTGAAAGCCGCCAGCGGCGCAGCGCCTACACGTTGAGTAGGCGAATCAGGCGTAAt > 1:2601293/1‑71 (MQ=255) tCATGGCGTATCTGGCTGAAAGCCGCCAGCGGCGCAGCGCCTACACGTTGAGTAGGCGAATCAGGCGTAAt > 1:2622122/1‑71 (MQ=255) cATGGCGTATCTGGCTGAAAGCCGCCAGCGGCGCAGCGCCTACACGTTGAGTAGGCGAATCAGGCGTAAt > 1:43401/1‑70 (MQ=255) tGGCGTATCTGGCTGAAAGCCGCCAGCGGCGCAGCGCCTACACGTTGAGTAGGCGAATCAGGCGTAATCa > 1:377246/1‑70 (MQ=255) ggCGTATCTGGCTGAAAGCCGCCAGCGGCGCAGCGCCTACACGTTGAGTAgg > 1:2722447/1‑52 (MQ=255) aaaccaaacatacagaactgattacgcctgattCGCCTACACGTTGAGTa > 1:48902‑M1/34‑50 (MQ=255) cGTATCTGGCTGAAAGCCGCCAGCGGCGCAGCGCCTACACGTTGAGTAGGCGAATCAGGCGTAATCAGTTc < 1:2101886/71‑1 (MQ=255) ccaaacatccagaactgattacgcctgattCGCCTACACGTTGAGTAGGc > 1:1152184‑M1/31‑50 (MQ=255) tATCTGGCTGAAAGCCGCCAGCGGCGCAGCGCCTACACGTTGAGTAGGCGAATCAGGCGTAATCAGtt < 1:805283/68‑1 (MQ=255) tATCTGGCTGAAAGCCGCCAGCGGCGCAGCGCCTACACGTTGAGTAGGCGAATCAGGCGTAATCAGTTCTg < 1:3932971/71‑1 (MQ=255) tCTGGCTGAAAGCCGCCAGCGGCGCAGCGCCTACACGTTg < 1:4827360/40‑1 (MQ=255) tCTGGCTGAAAGCCGCCAGCGGCGCAGCGCCTACACGTTGAGTAGGCGAATCAg > 1:4574911/1‑54 (MQ=255) ggCTGAAAGCCGCCAGCGGCGCAGCGCCTACACGTTGAGTAGGCGAATCAGGCGTAATCAGTTCTGGATGt > 1:2052367/1‑71 (MQ=255) gCTGAAAGCCGCCAGCGGCGCAGCGCCTACACGTTGAGTAGGCGAATCAGGCGTAATCAGTTCTGGATGt < 1:858315/70‑1 (MQ=255) aaaGCCGCCAGCGGCGCAGCGCCTACACGTTGAGTAGGCGAATCa < 1:690592/45‑1 (MQ=255) aaaGCCGCCAGCGGCGCAGCGCCTACACGTTGAGTAGGCGAATCa < 1:1075487/45‑1 (MQ=255) aaaGCCGCCAGCGGCGCAGCGCCTACACGTTGAGTAGGCGAATCAGGCGTAATCAGTTCTGGATGTTTGGt < 1:3724536/71‑1 (MQ=255) aaaGCCGCCAGCGGCGCAGCGCCTACACGTTGAGTAGGCGAATCAGGCGTAATCAGTTCTGGATGTTTGGt > 1:5151108/1‑71 (MQ=255) aaaGCCGCCAGCGGCGCAGCGCCTACACGTTGAGTAGGCGAATCAGGCGTAATCAGTTCTGGATGTTTGGt > 1:3100892/1‑71 (MQ=255) cgccAGCGGCGCAGCGCCTACACGTTGAGTAGGCGAATCAGGCGTAATCAGTTCTGGATGTTTGGTTTc > 1:3633868/1‑69 (MQ=255) cgccAGCGGCGCAGCGCCTACACGTTGAGTAGGCGAATCAGGCGTAATCAGTTCTGGATGTTTGGTTTc > 1:2502742/1‑69 (MQ=255) ccAGCGGCGCAGCGCCTACACGTTGAGTAGGCGAATCAGGCGTAATCAGTTCTGGATGTTTGGTTTCCAGc > 1:3158120/1‑71 (MQ=255) cAGCGGCGCAGCGCCTACACGTTGAGTAGGCGAATCAGGCGTAATCAGTTCTGGATGTTTGGTTTCCAGCt > 1:4733550/1‑71 (MQ=255) aGCGGCGCAGCGCCTACACGTTGAGTAGGCGAATCAGGCGTAATCAGTTCTGGATGTTTGGTTTCCAGCTc > 1:189555/1‑71 (MQ=255) cggcgCAGCGCCTACACGTTGAGTAGGCGAATCAGGCGTAATCAGTTCTGGATGTTTGGTTTCCAGCTcgc < 1:2353147/71‑1 (MQ=255) cggcgCAGCGCCTACACGTTGAGTAGGCGAATCAGGCGTAATCAGTTCTGGATGTTTGGTTTCCAGCTcgc > 1:670179/1‑71 (MQ=255) cggcgCAGCGCCTACACGTTGAGGAGGCGAATCAGGCGTAATCAGTTCTgg < 1:366316/51‑1 (MQ=255) cgcAGCGCCTACACGTTGAGTAGGCGAATCAGGCGTAATCAGTTCTGGATGTTTGGTTTCCAGCTCGCGCa < 1:4849693/71‑1 (MQ=255) gcAGCGCCTACACGTTGAGTAGGCGAATCAGGCGTAATCAGTTCTGGATGTTTGGTTTCCAGCTCGCGCAg > 1:334232/1‑71 (MQ=255) cAGCGCCTACACGTTGAGTAGGCGAATCAGGCGTAATCAGTTCt > 1:1710214/1‑44 (MQ=255) cAGCGCCTACACGTTGAGTAGGCGAATCAGGCGTAATCAGTTCTGGATGt < 1:428348/50‑1 (MQ=255) cAGCGCCTACACGTTGAGTAGGCGAATCAGGCGTAATCAGTTCTGGATGTTTGGTTTCCAGCTCGCGCAGt < 1:3369794/71‑1 (MQ=255) CGCCTACACGTTGAGTAGGCGAATCAGGCGTAATCAGTTCTGGATGTTTGGTTTCCAGCTCGCGCAGTTcg < 1:3507927‑M1/71‑1 (MQ=255) | TCAAAAACGTTATCCAGTGACAGCATTGGTACTTCATGGCGTATCTGGCTGAAAGCCGCCAGCGGCGCAGCGCCTACACGTTGAGTAGGCGAATCAGGCGTAATCAGTTCTGGATGTTTGGTTTCCAGCTCGCGCAGTTCG > AP009048/2535363‑2535503 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |