| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 2675410 = | 60 (1.070) | 3 (0.060) | 3/96 | NT | 5.3% | coding (72/999 nt) | yphD | predicted sugar transporter subunit |
| ? | AP009048 | 2675430 = | 50 (0.940) | coding (52/999 nt) | yphD | predicted sugar transporter subunit | |||||
AAAGCCAGGCGCGTTCAGGGAGAAGACCAGATAAAGAATGGCAATCACCACCAGCAAACCGATCTCATTAATATGGCGACTGACAAATTGTTTGAGCGAGACGCTCTTGCCCTGCGGCAATGGTAATGACGAAGCAGACA > AP009048/2675341‑2675480 | aaaGCCAGGCGCGTTCAGGGAGAAGACCAGATAAAGAATGGCAATCACCACCAGCAAACCGATCTCATTaa > 1:4432403/1‑71 (MQ=255) aaGCCAGGCGCGTTCAGGGAGAAGACCAGATAAAGAATGGCAATCACCACCAGCAAACCGATCTCATTaa < 1:81179/70‑1 (MQ=255) aaGCCAGGCGCGTTCAGGGAGAAGACCAGATAAAGAATGGCAATCACCACCAGCAAACCGATCTCATTa > 1:2942994/1‑69 (MQ=255) aaGCCAGGCGCGTTCAGGGAGAAGACCAGATAAAGAATGGCAATCACCACCAGCAAACCGATCTCATTAat < 1:658498/71‑1 (MQ=255) aGCCAGGCGCGTTCAGGGAGAAGACCAGATAAAGAATGGCAATCACCACCAGCAAACCGATCTCATTAata > 1:798069/1‑71 (MQ=255) ccAGGCGCGTTCAGGGAGAAGACCAGATAAAGAATGGCAATCACCACCAGCAAACCGATCTCATTAATATg < 1:3406550/71‑1 (MQ=255) aGGCGCGTTCAGGGAGAAGACCAGATAAAGAATGGCAATCACCACCAGCAAACCTATCTCATTAATATGGc > 1:1521957/1‑71 (MQ=255) aGGCGCGTTCAGGGAGAAGACCAGATAAAGAATGGCAATCACCACCAGCAAACCGATCTCATTAATATGGc < 1:5181331/71‑1 (MQ=255) gcgcGTTCAGGGAGAAGACCAGATAAAGAATGGCAATCACCACCAGCAAACCGATCTCATTAATATg > 1:4241759/1‑67 (MQ=255) gcgcGTTCAGGGAGAAGACCAGATAAAGAATGGCAATCACCACCAGCAAACCGATCTCATTAATATGGCGa > 1:5069903/1‑71 (MQ=255) gcgcGTTCAGGGAGAAGACCAGATAAAGAATGGCAATCACCACCAGCAAACCGATCTCATTAATATGGCGa > 1:1916772/1‑71 (MQ=255) cgcgTTCAGGGAGAAGACCAGATAAAGAATGGCAATCACCACCAGCAAACCGATCTCATTAATATgg > 1:2647363/1‑67 (MQ=255) cgcgTTCAGGGAGAAGACCAGATAAAGAATGGCAATCACCACCAGCAAACCGATCTCATTAATATGGCGAc < 1:3055156/71‑1 (MQ=255) cAGGGAGAAGACCAGATAAAGAATGGCAATCACCACCAGCAAACCGATCTCATTAATATGGCGACTGACa > 1:2622728/1‑70 (MQ=255) gggAGAAGACCAGATAAAGAATGGCAATCACCACCAGCAAACCGATCTCATTAATATGGCGACTGACAAAt < 1:3888552/71‑1 (MQ=255) gggAGAAGACCAGATAAAGAATGGCAATCACCACCAGCAAACCGATCTCATTAATATGGCGACTGACAAAt < 1:849988/71‑1 (MQ=255) gagaAGACCAGATAAAGAATGGCAATCACCACCAGCAAACCGATCTCATTAATATGGCGACTGACa < 1:3903211/66‑1 (MQ=255) gagaAGACCAGATAAAGAATGGCAATCACCACCAGCAAACCGATCTCATTAATATGGCGACTGACAAATTg < 1:4018385/71‑1 (MQ=255) gagaAGACCAGATAAAGAATGGCAATCACCACCAGCAAACCGATCTCATTAATATGGCGACTGACAAATTg < 1:3456792/71‑1 (MQ=255) tctgcttcgtcattaccattgccgcagggcaagagcgtctcgctcaaacAATATGGCGACTGACAAATTGt > 1:3326505‑M1/50‑71 (MQ=255) tgcttcgtcattaccattgccgcagggcaagagcgtctcgctcaaacAATATGGCGACTGACAAAt > 1:2946312‑M1/48‑66 (MQ=255) aagaCCAGATAAAGAATGGCAATCACCACCAGCAAACCGATCTCATTAATATGGCGACTGACAAATTGttt > 1:2984944/1‑71 (MQ=255) aagaCCAGATAAAGAATGGCAATCACCACCAGCAAACCGATCTCATTAATATGGCGACTGACAAATTGttt < 1:951026/71‑1 (MQ=255) gcttcgtcattaccattgccgcagggcaagagcgtctcgctcaaacAATATGGCTACTGACAAATTGttt < 1:2239633‑M1/24‑1 (MQ=255) agaCCAGATAAAGAATGGCAATCACCACCAGCAAACCGATCTCATTAATATGGCGACTGACAAATTGTTTg < 1:4776489/71‑1 (MQ=255) gaCCAGATAAAGAATGGCAATCACCACCAGCAAACCGATCTCATTAATATGGCGACTGACAAATTGttt > 1:1766730/1‑69 (MQ=255) gaCAAGATAAAGAATGGCAATCACCACCAGCAAACCGATCTCATTAATATGGCGACTGACAAAtt > 1:5185509/1‑65 (MQ=255) cAGATAAAGAATGGCAATCACCACCAGCAAACCGATCTCATTAATATGGCGACTGACAAATTGTTTGAGCg < 1:175084/71‑1 (MQ=255) gtcattaccattgccgcagggcaagagcgtctcgctcaaaca > 1:3495497‑M1/42‑42 (MQ=255) aGATAAAGAATGGCAATCACCACCAGCAAACCGATCTCATTAATATGGCGACTGACAAATTGTTTGAGCga < 1:1347541/71‑1 (MQ=255) gATAAAGAATGGCAATCACCACCAGCAAACCGATCTCATTAATATGGCGACTGACAAATTGTTTGAGc > 1:4955310/1‑68 (MQ=255) gATAAAGAATGGCAATCACCACCAGCAAACCGATCTCATTAATATGGCGACTGACAAATTGTTTGAGCgag < 1:4916979/71‑1 (MQ=255) aTAAAGAATGGCAATCACCACCAGCAAACCGATCTCATTAATATGGCGa > 1:2453574/1‑49 (MQ=255) aTAAAGAATGGCAATCACCACCAGCAAACCGATCTCATTAATATGGCGa > 1:1330725/1‑49 (MQ=255) tAAAGAATGGCAATCACCACCAGCAAACCGATCTCATTaa < 1:3274422/40‑1 (MQ=255) tAAAGAATGGCAATCACCACCAGCAAACCGATCTCATTAATATGGCGACt < 1:18353/50‑1 (MQ=255) aaaGAATGGCAATCACCACCAGCAAACCGATCTCATTaa > 1:578595/1‑39 (MQ=255) aaaGAATGGCAATCACCACCAGCAAACCGATCTCATTaa > 1:379361/1‑39 (MQ=255) aaaGAATGGCAATCACCA‑CAGCAAACCGATCTCATTAata > 1:1413237/1‑40 (MQ=38) aaGAATGGCAATCACCACCAGCAAACCGATCTCATTAATATGGCGACTGACAAATTGTTTGAGCga > 1:3143603/1‑66 (MQ=255) aGAATGGCAATCACCACCAGCAAACCGATCTCATTaa < 1:4456047/37‑1 (MQ=255) aGAATGGCAATCACCACCAGCAAACCGATCTCATTAATATGGCGACTGACAAATTGTTTGAGCga > 1:2137427/1‑65 (MQ=255) aTGGCAATCACCACCAGCAAACCGATCTCATTAATATGGCGACTGa > 1:3098283/1‑46 (MQ=255) aTGGCAATCACCACCAGCAAACCGATCTCATTAATATGGCGACTGa > 1:5069472/1‑46 (MQ=255) tGGCAATCACCACCAGCAAACCGATCTCATTAATATGGCGACTGACAAATTGTTTGAGCGAGACGCTCTTg > 1:3747021/1‑71 (MQ=255) gCAATCACCACCAGCAAACCGATCTCATTAATATGGCg > 1:3556275/1‑38 (MQ=255) cAATCCCCCCCAGCAAACCGATCTCATTAATATGGCGACTGACAAAtt > 1:1345666/1‑48 (MQ=39) aaTCACCACCAGCAAACCGATCTCATTAATATGGCGACTGACAAAtt < 1:2690860/47‑1 (MQ=255) aTCACCACCAGCAAACCGATCTCATTAATATGGCGACTGACAAATTGTTTGAGCGAGACGCTCTTGCCCTg > 1:5030814/1‑71 (MQ=255) aTCACCACCAGCAAACCGATCTCATTAATATGGCGACTGACAAATTGTTTGAGCGAGACGCTCTTGCCCTg < 1:4934480/71‑1 (MQ=255) tCACCACCAGCAAACCGATCTCATTAATATGGCGACTGACAAATTGt < 1:3806163/47‑1 (MQ=255) tCACCACCAGCAAACCGATCTCATTAATATGGCGACTGACAAATTGTTTGAGCGAGAc < 1:3272242/58‑1 (MQ=255) tCACCACCAGCAAACCGATCTCATTAATATGGCGACTGACAAATTGTTTGAGCGAGACGCTCTTGCCCTGc < 1:3672512/71‑1 (MQ=255) accaccAGCAAACCGATCTCATTAATATGGCGACTGACAAATTGTTTGAGCgaga > 1:1244899/1‑55 (MQ=255) accaccAGCAAACCGATCTCATTAATATGGCGACTGACAAATTGTTTGAGCgaga > 1:1353302/1‑55 (MQ=255) accaccAGCAAACCGATCTCATTAATATGGCGACTGACAAATTGTTTGAGCGAGACGCTCTTGCCCTGCgg > 1:1599863/1‑71 (MQ=255) accaccAGCAAACCGATCTCATTAATATGGCGACTGACAAATTGTTTGAGCGAGACGCTCTTGCCCTGCgg > 1:4496632/1‑71 (MQ=255) ccaGCAAACCGATCTCATTAATATGGCGACTGACAAATTGTTTGAGCGAGACGCTCTTGCCCTGc > 1:2690319/1‑65 (MQ=255) ccaGCAAACCGATCTCATTAATATGGCGACTGACAAATTGTTTGAGCGAGACGCTCTTGCCCTGCGGCAAt > 1:774443/1‑71 (MQ=255) caGCAAACCGATCTCATTAATATGGCGACTGACAAATTGTTTGAGCgaga > 1:4088702/1‑50 (MQ=255) caGCAAACCGATCTCATTAATATGGCGACTGACAAATTGTTTGAGCgaga > 1:2754511/1‑50 (MQ=255) caGCAAACCGATCTCATTAATATGGCGACTGACAAATTGTTTGAGCGAGACGCTCTTGCCCTGCGGCAATg > 1:2743885/1‑71 (MQ=255) gCAAACCGATCTCATTAATATGGCGACTGACAAATTGTTTGAGCGAGACGCTCTTGCCCTGCg > 1:14232/1‑63 (MQ=255) gCAAACCGATCTCATTAATATGGCGACTGACAAATTGTTTGAGCGAGACGCTCTTGCCCTGCGGCAATGGt < 1:5118792/71‑1 (MQ=255) gCAAACCGATCTCATTAATATGGCGACTGACAAATTCTTTGAg > 1:615499/1‑43 (MQ=255) aaaCCGATCTCATTAATATGGCGACTGACAAATTGTTTGAGCg > 1:774755/1‑43 (MQ=255) aaCCGATCTCATTAATATGGCGACTGACAAATTGTTTGAGCGAGACGCTCTTGCCCTGCGGCAATGGTAAt < 1:2440418/71‑1 (MQ=255) aaCCGATCTCATTAATATGGCGACTGACAAATTGTTTGAGCGAGACGCTCTTGCCCTGCGGCAATGGTAAt < 1:2147767/71‑1 (MQ=255) aaCCGATCTCATTAATATGGCGACTGACAAATTGTTTGAGCGAGACGCTCTTGCCCTGCGGCAATGGTAAt < 1:368661/71‑1 (MQ=255) aCCGATCTCATTAATATGGCGACTGACAAATTGTTTGAGCGAGACGCTCTTGCCCTGCGGCAATGGt < 1:3323600/67‑1 (MQ=255) aCCGATCTCATTAATATGGCGACTGACAAATTGTTTGAGCGAGACGCTCTTGCCCTGCGGCAATGGTAAt > 1:41856/1‑70 (MQ=255) aTCTCATTAATATGGCGACTGACAAATTGTTTGAGCGAGACGCTCTTGCCCTGCGGCaa < 1:2354252/59‑1 (MQ=255) aTCTCATTAATATGGCGACTGACAAATTGTTTGAGCGAGACGCTCTTGCCCTGCGGCaa < 1:2869843/59‑1 (MQ=255) ctcATTAATATGGCGACTGACAAATTGTTTGAGCGAGACGCTCTTGCCCTTCGGCAATGGTAATGa > 1:1612837/1‑66 (MQ=255) tcATTAATATGGCGACTGACAAATTGTTTGAGCGAGACGCTCTTGCCCTGCGGCAATGGTAATGACGAAg > 1:3300743/1‑70 (MQ=255) cATTAATATGGCGACTGACAAATTGTTTGAGCGAGACGctct > 1:1699936/1‑42 (MQ=255) aTTAATATGGCGACTGACAAATTGTTTGAGCGAGACGCTCTTGCCCTGCGGCAATgg > 1:4421633/1‑57 (MQ=255) aTTAATATGGCGACTGACAAATTGTTTGAGCGAGACGCTCTTGCCCTGCGGCAATGGTAATGACGaa < 1:3755722/67‑1 (MQ=255) aTTAATATGGCGACTGACAAATTGTTTGAGCGAGACGCTCTTGCCCTGCGGCAATGGTAATGACGaa < 1:1573868/67‑1 (MQ=255) aTTAATATGGCGACTGACAAATTGTTTGAGCGAGACGCTCTTGCCCTGCGCCAATGGTAATGACGaa < 1:2604830/67‑1 (MQ=255) ttAATATCGCGACTGACAAATTGTTTGAGATAGACGCTCtt > 1:238873/1‑41 (MQ=37) AATATGGCGACTGACAAATTGTTTGAGCGAGACGCTCTTGCCCTGCGGCAATGGTaa < 1:1039453‑M1/57‑1 (MQ=255) AATATGGCGACTGACAAATTGTTTGAGCGAGACGCTCTTGCCCTGCGGCAATGGTAATGACGAAGCAGACa < 1:209161‑M1/71‑1 (MQ=255) | AAAGCCAGGCGCGTTCAGGGAGAAGACCAGATAAAGAATGGCAATCACCACCAGCAAACCGATCTCATTAATATGGCGACTGACAAATTGTTTGAGCGAGACGCTCTTGCCCTGCGGCAATGGTAATGACGAAGCAGACA > AP009048/2675341‑2675480 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |