| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 3265510 | 72 (1.280) | 4 (0.080) | 3/90 | NT | 6.1% | coding (374/990 nt) | tdcB | catabolic threonine dehydratase, PLP‑dependent |
| ? | AP009048 | = 3265514 | 60 (1.210) | coding (370/990 nt) | tdcB | catabolic threonine dehydratase, PLP‑dependent | |||||
Only 100 of 119 total aligned reads displayed.
ATACGGCCTTCCATTTCGACAATTTCGCTCACTTTAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCTACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTT > AP009048/3265441‑3265580 | aTACGGCCTTCCATTTCGACAATTTCGCTCACTTTAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAA > 1:3555164‑M1/1‑70 (MQ=255) cGGCCTTCCATTTCGACAATTTCGCTCACTTTAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGAc < 1:2126778/71‑1 (MQ=255) ggCCTTCCATTTCGACAATTTCGCTCACTTTAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACt > 1:3644985‑M2/1‑70 (MQ=255) cTTCCATTTCGACAATTTCGCTCACTTTAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACttct > 1:4071939‑M2/1‑67 (MQ=255) ttCCATTTCGACAATTTCGCTCACTTTAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACg > 1:2104466/1‑64 (MQ=255) ttCCATTTCGACAATTTCGCTCACTTTAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACttc < 1:3047621‑M2/69‑4 (MQ=255) tCCATTTCGACAATTTCGCTCACTTTAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACttctgc < 1:67502‑M2/71‑7 (MQ=255) accATATCGACAATTTCGCTCACTTTAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACg > 1:1019226/2‑63 (MQ=255) ccATTTCGACAATTTCGCTCACTTTAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAAgtcgttctgc < 1:1288247‑M1/70‑11 (MQ=255) ccATTTCGACAATTTCGCTCACTTTAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACttctg > 1:3396257‑M2/1‑64 (MQ=255) cATTTCGACAATTTCGCTCACTTTAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAAgtcgttctgca < 1:4238262‑M1/70‑12 (MQ=255) cATTTCGACAATTTCGCTCACTTTAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCgg < 1:2499148/71‑1 (MQ=255) cATTTCGACAATTTCGCTCACTTTAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCg > 1:439930/1‑70 (MQ=255) cATTTCGACAATTTCGCTCACTTTAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCg < 1:2140426/70‑1 (MQ=255) gACAATTTCGCTCACTTTAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGagtag < 1:4429992/70‑1 (MQ=255) aCAATTTCGCTCACTTTAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACttctgag > 1:2066229‑M2/1‑56 (MQ=255) cAATTTCGCTCACTTTAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCg > 1:4956678/1‑71 (MQ=255) cAATTTCGCTCACTTTAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCg > 1:656518/1‑71 (MQ=255) cAATTTCGCTCACTTTAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCg > 1:653719/1‑71 (MQ=255) aaTTTCGCTCACTTTAGCGATAGTGTCGTTGAAGTTATCACCATTCAGAA > 1:1724785‑M1/1‑50 (MQ=255) tttCGCTCACTTTAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCAc < 1:4553581/71‑1 (MQ=255) gCTCACTTTAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTg < 1:4236793/71‑1 (MQ=255) cTCACTTTAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTg < 1:4046511/70‑1 (MQ=255) tCACTTTAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAAgtcgttctgca < 1:1520538‑M1/53‑12 (MQ=255) aCTTTAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAAgtcgttctgcatg > 1:2711599‑M1/1‑40 (MQ=255) aCTTTAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACttctg < 1:4387250‑M2/49‑6 (MQ=255) aCTTTAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGcc < 1:2399541/69‑1 (MQ=255) aCTTTAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCg < 1:2446033/70‑1 (MQ=255) aCTTTAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCg > 1:498843/1‑70 (MQ=255) aCTTTAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGc > 1:4579788/1‑71 (MQ=255) aCTTTAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGc > 1:1388395/1‑71 (MQ=255) cTTTAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGc > 1:1930161/1‑67 (MQ=255) tttAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCgg < 1:174967/50‑1 (MQ=255) tttAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCgg < 1:1526261/50‑1 (MQ=255) ttAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAA < 1:3807914‑M1/37‑1 (MQ=255) ttAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAA < 1:4110957‑M1/37‑1 (MQ=255) tAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCTAc < 1:4205877/70‑1 (MQ=255) tAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCTACt > 1:1533745/1‑71 (MQ=255) aGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGcc > 1:4107029/1‑64 (MQ=255) aGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCTACt < 1:1713317/70‑1 (MQ=255) aGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACCACTTCTGCGGAGTAGTCGCACGTTGCCGCTAcat > 1:77175/1‑69 (MQ=255) cGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCTACttt > 1:2317517/1‑70 (MQ=255) cGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCTACtt > 1:4990673/1‑69 (MQ=255) gATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCTACTTTgg < 1:2592926/71‑1 (MQ=255) tAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCTACttt > 1:5164461/1‑67 (MQ=255) aGTGTCGTTGAAGTTATCACCATGCAGAACGTCttct > 1:4268900‑M2/1‑33 (MQ=255) aGTGTCGTTGAAGTTATCACCATGCAGAACGACttctg > 1:2940727‑M2/1‑33 (MQ=255) gtgtCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCTACTTTGGAttt < 1:4220052/71‑1 (MQ=255) gtgtCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCTACTTTGGAtt < 1:4852983/70‑1 (MQ=255) tgtCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACg < 1:3025672/51‑1 (MQ=255) gtCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGa < 1:374784/39‑1 (MQ=255) tCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGa < 1:4483838/38‑1 (MQ=255) tCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGa < 1:1601671/38‑1 (MQ=255) tCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCAc < 1:545159/48‑1 (MQ=255) tCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCTACttt < 1:1362206/62‑1 (MQ=255) tCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCTACTTTGGAt < 1:818026/66‑1 (MQ=255) tCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCTACTTTGGATTTTgg < 1:1812934/71‑1 (MQ=255) tCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCTACTTTGGATTTTgg < 1:4651802/71‑1 (MQ=255) tCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCTACTTTGGATTTTg < 1:670253/70‑1 (MQ=255) cGTTGAAGTTATCACCATGCAGAACGCCTTCTGCGGagtagt > 1:608332/1‑42 (MQ=255) gTTGAAGTTATCACCATGCAGAACGACTTCTGCGGa < 1:1232671/36‑1 (MQ=255) gTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCTACTTTGGAttt < 1:2336668/66‑1 (MQ=255) ttGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCa < 1:2867857/44‑1 (MQ=255) ttGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTg < 1:630634/49‑1 (MQ=255) ttGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGcc < 1:1590116/51‑1 (MQ=255) gAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGcc > 1:4871177/1‑49 (MQ=255) gAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGcc > 1:4877098/1‑49 (MQ=255) aGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCTACTTTGGATTTTGGCGCACCt > 1:1676824/1‑71 (MQ=255) aGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCTACTTTGGATTTTGGCGCACCt > 1:3165912/1‑71 (MQ=255) gTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCTACTTTGGATTTTTGCGCACCtt < 1:3419600/71‑1 (MQ=255) aTCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCTACTTTGGATTTTGGCGCACCtttt < 1:2991189/70‑1 (MQ=255) aTCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCTACTTTGGATTTTGGCGCACCtttt < 1:690302/70‑1 (MQ=255) tCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCTACTTTGGATTTTGGCGCACCTTTTgg > 1:4537555/1‑71 (MQ=255) tCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCTACTTTGGATTTTGGCGCACCTTTTg < 1:2020568/70‑1 (MQ=255) aCCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCTACTTTGGATTTTGGCGCACCTTTTGGc < 1:3739784/70‑1 (MQ=255) aCCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCTACTTTGGATTTTGGCGCACCTTTTGGCa < 1:1175959/71‑1 (MQ=255) aCCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCTACTTTGGATTTTGGCGCACCTTTTGGCa < 1:1406693/71‑1 (MQ=255) cATGCAGAACGACttctgcatggtgataacttcaacgacactatcgctaaagt > 1:2711599‑M2/1‑13 (MQ=255) cATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCTACTTTGGATTTTGGCGCACCTTTTGGCAt > 1:1282989/1‑70 (MQ=255) aTGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCTACTTTGGATTTTGGCGCACCTTTTGGCATca > 1:1800230/1‑71 (MQ=255) tGCAGAACGACttctgcatggtgataacttcaacgacactatcgctaaagtgagcgaaattgtcgaaatg < 1:4238262‑M2/70‑60 (MQ=255) tGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCTACTTTGGATTTTGGCGCACCTTTTGGCATcac > 1:5147310/1‑71 (MQ=255) ctcagAAgtcgttctgcatggtgataacttcaacgacactatcgctaaagtgagcgaaattgt > 1:2066229‑M1/3‑7 (MQ=255) gCAGAAgtcgttctgcatggtgataacttcaacgacactatcgctaaagtgagcgaaattgtcgaaatgga < 1:2616686‑M1/71‑66 (MQ=255) gCAGAACGACttctgcatggtgataacttcaacgacactatcgctaaagtgagcgaaattgtcgaaatgg < 1:1288247‑M2/70‑61 (MQ=255) gCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCTCTACTTTGGATTTTg < 1:4137110/51‑1 (MQ=255) cAGAAgtcgttctgcatggtgataacttcaacgacactatcgctaaagtgagcgaaattgtcgaaatgg > 1:3396257‑M1/1‑5 (MQ=255) cAGAAgtcgttctgcatggtgataacttcaacgacactatcgctaaagt < 1:4387250‑M1/49‑45 (MQ=255) cAGAAgtcgttctgcatggtgataacttcaacgacact > 1:2940727‑M1/1‑5 (MQ=255) agaagacgttctgcatggtgataacttcaacgacact > 1:4268900‑M1/1‑4 (MQ=255) aGAAgtcgttctgcatggtgataacttcaacgactctatcgct < 1:973081‑M1/43‑40 (MQ=255) aGAAgtcgttctgcatggtgataacttcaacgacactatcgctaaagtgagcgaaattgtcgaaatggaag > 1:4071939‑M1/1‑4 (MQ=255) aGAAgtcgttctgcatggtgataacttcaacgacactatcgctaaagt < 1:1674266‑M1/48‑45 (MQ=255) gAAgtcgttctgcatggtgataacttcaacgacactatcgctaaagtgagcgaaattgtcgaaatggaa < 1:3047621‑M1/69‑67 (MQ=255) gAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCTACTTTGGATTTTGGCGCACCTTTTGGCATCACCACt < 1:3929475/71‑1 (MQ=255) aaCGACTTCTGCGGAGTAGTCGCACGTTGCCGCTACTTTGGATTTTGGCGCACCTTTTGGCATcac > 1:2564197/1‑66 (MQ=255) aaCGACTTCTGCGGAGTAGTCGCACGTTGCCGCTACTTTGGATTTTGGCGCACCTTTTGGCATCACCACtt < 1:1405567/71‑1 (MQ=255) aCGACTTCTGCGGAGTAGTCGCACGTTGCCGCTACTTTGGATTTTGGCGCACCttt > 1:4797967/1‑56 (MQ=255) aCGACTTCTGCGGAGTAGTCGCACGTTGCCGCTACTTTGGATTTTGGCGCACCTTTTGGc > 1:262511/1‑60 (MQ=255) aCGACTTCTGCGGAGTAGTCGCACGTTGCCGCTACTTTGGATTTTGGCGCACCTTTTGGCATCACCACtt < 1:361843/70‑1 (MQ=255) | ATACGGCCTTCCATTTCGACAATTTCGCTCACTTTAGCGATAGTGTCGTTGAAGTTATCACCATGCAGAACGACTTCTGCGGAGTAGTCGCACGTTGCCGCTACTTTGGATTTTGGCGCACCTTTTGGCATCACCACTTT > AP009048/3265441‑3265580 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |