| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 3307000 = | 53 (0.940) | 4 (0.080) | 3/92 | NT | 8.1% | coding (716/1890 nt) | deaD | ATP‑dependent RNA helicase |
| ? | AP009048 | 3307021 = | 43 (0.850) | coding (695/1890 nt) | deaD | ATP‑dependent RNA helicase | |||||
AGCCACTTCCAGAGTCGCGTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTGCGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGG > AP009048/3306930‑3307069 | gcattcagtccagcgtgactacccgtcctgacatcagccagagctactggactgtctggggtatgcgcaaa > 1:3351333‑M1/71‑71 (MQ=255)gcattcagtccagcgtgactacccgtcctgacatcagccagagctactggactgtctggggtatgcgcaaa > 1:1717550‑M1/71‑71 (MQ=255) attcagtccagcgtgactacccgtcctgacatcagccagagctactggactgtctggggtatgcgcaaaaa < 1:3160370‑M1/3‑1 (MQ=255) attcagtccagcgtgactacccgtcctgacatcagccagagctactggactgtctggggtatgcgcaaa > 1:2942232‑M1/69‑69 (MQ=255) cagtccagcgtgactacccgtcctgacatcagccagagctactggactgtctggggtatgcgcaaAAACg > 1:4880063‑M1/66‑70 (MQ=255) cagtccagcgtgactacccgtcctgacatcagccagagctactggactgtctggggtatgcgcaaAAACg < 1:4702830‑M1/5‑1 (MQ=255) cagtccagcgtgactacccgtcctgacatcagccagagctactggactgtctggggtatgcgcaaAAACg < 1:4037486‑M1/5‑1 (MQ=255) cagtccagcgtgactacccgtcctgacatcagccagagctactggactgtctggggtatgcgcaaAAACg > 1:3869927‑M1/66‑70 (MQ=255) ccAGAGTCGCGTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTa < 1:3963554/69‑1 (MQ=255) cAGAGTCGCGTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCa < 1:4768932/71‑1 (MQ=255) gagTCGCGTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGt < 1:1272823/71‑1 (MQ=255) gagTCGCGTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGt < 1:4639374/71‑1 (MQ=255) gcgTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTc > 1:3759498/1‑71 (MQ=255) cgTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCt < 1:3052688/68‑1 (MQ=255) gTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCg < 1:2726360/70‑1 (MQ=255) gTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGt > 1:2040392/1‑71 (MQ=255) ctacccgtcctgacatcagccagagctactggactgtctggggtatgcgcaaa > 1:2062910‑M1/53‑53 (MQ=255) tttGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGtttt > 1:1418914/1‑71 (MQ=255) tttGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGttt < 1:1493422/70‑1 (MQ=255) cccgtcctgacatcagccagagctactggactgtctggggtatgcgcaaa < 1:1045127‑M1/1‑1 (MQ=255) tGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGttttt < 1:3806981/70‑1 (MQ=255) tACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGa < 1:2628131/45‑1 (MQ=255) cgaacgaaGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGtttt > 1:901821/1‑64 (MQ=255) cgaacgaaGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTGCGCa > 1:4298358/1‑70 (MQ=255) gaacgaaGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTc > 1:3854453/1‑58 (MQ=255) acatcagccagagctactggactgtctggggtatgcgcaaaaa < 1:772715‑M1/3‑1 (MQ=255) acgaaGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTGCGCATAcc < 1:831201/71‑1 (MQ=255) gaaGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGt < 1:3150118/43‑1 (MQ=255) gaaGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCCGTGCTTCGTTTTTGCGCATAccc > 1:1274125/1‑70 (MQ=255) aaGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTgcg < 1:2190177/62‑1 (MQ=255) gATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGt < 1:4252014/53‑1 (MQ=255) gATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTGCGCATACCCCAGa > 1:3870401/1‑71 (MQ=255) ccagagctactggactgtctggggtatgcgcaaAAACGTACCAGTGCTTCGt > 1:3157558‑M1/34‑52 (MQ=255) ccagagctactggactgtctggggtatgcgcaaAAACGTACCAGTGCTTCGt > 1:3545174‑M1/34‑52 (MQ=255) aTAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGtt > 1:3143472/1‑53 (MQ=255) aTAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGt < 1:4322281/52‑1 (MQ=255) tAATCGCCGCATCAAAATCTTCCGCTTCCAGGaaa > 1:2814407/1‑35 (MQ=255) tAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGc > 1:4601604/1‑46 (MQ=255) aaTCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTGCGCATACCCCAGACAg > 1:1279634/1‑71 (MQ=255) tCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTGCTCATACCCCAg < 1:1306213/65‑1 (MQ=255) tCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTGCGCATACCCCAg < 1:1566243/65‑1 (MQ=255) tCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTGCGCATACCCCAg < 1:4645392/65‑1 (MQ=255) tCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTGCGCATACCCCAGACAGTc < 1:781595/71‑1 (MQ=255) ccgcATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTGCGCATACCCCAGACAGTCCAg > 1:4959066/1‑71 (MQ=255) ccgcATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTGCGCATACCCCAGACAGTCCAg < 1:4166956/71‑1 (MQ=255) actggactgtctggggtatgcgcaaAAACGTACCAGTg > 1:4342927‑M1/26‑38 (MQ=255) tggactgtctggggtatgcgcaaAAACGTACCAGTGCt < 1:5084115‑M1/15‑1 (MQ=255) cATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGttt < 1:4338032/44‑1 (MQ=255) cATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTGCGCATa > 1:4236020/1‑53 (MQ=255) cATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTGCGCATACCCCAGACAGTCCAGTAg > 1:3623936/1‑71 (MQ=255) aTCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTGCGCATAcc < 1:3027163/54‑1 (MQ=255) aTCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTGCCCATACCCCAGACAGTCCAGTAGc < 1:3896037/71‑1 (MQ=255) tCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTGCGCATACCCCAGACAg < 1:561573/61‑1 (MQ=255) tCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTGCGCATACCCCAGACAGTc < 1:3650611/63‑1 (MQ=255) tCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTGCGCATACCCCAGACAGTCCAGTAGc > 1:61465/1‑70 (MQ=255) tCAAAATCTTCCGCCTCGAGGAAACGTACCAGTGCTTCGTTTTTGCGCATACCCCAGACAGTCCa < 1:1313850/65‑1 (MQ=255) aaaaTCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTg > 1:641827/1‑43 (MQ=255) aaaaTCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTGCGCATACCCCAGAc > 1:1486857/1‑57 (MQ=255) aaaaTCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTGCGCATACCCCAGACAGTCCAGTAGctct > 1:1755473/1‑71 (MQ=255) aaaTCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTGCGCa > 1:3857336/1‑46 (MQ=255) aaaTCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTGCGCATa > 1:3980668/1‑48 (MQ=255) aaaTCTTACGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTg > 1:1831150/1‑42 (MQ=255) aaTCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTGCGCATACCCCAGACAGTCCAGTAGCTCTg > 1:3772573/1‑70 (MQ=255) aTCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTGCGCATACCCCAGACAGTCCAg > 1:2532440/1‑61 (MQ=255) aTCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTGCGCATACCCCAGACAGTCCAGTAGCTCTGGc > 1:3531662/1‑71 (MQ=255) tCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTGCGCATACCCCAGACAGTCCAGTAGCTCTGGCt > 1:3699564/1‑71 (MQ=255) tCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTGCGCATACCCCAGACAGTCCAGTAGCTCTGGCt > 1:2121110/1‑71 (MQ=255) ttCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTGCGCATACCCCAGACAGTCCAGTAGCTCTGGCTGa > 1:4350515/1‑71 (MQ=255) tCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTGCGCATACCCCAGACAGTCCAGTAGCTCTGGCTGAt > 1:3046023/1‑71 (MQ=255) cTTCCAGGAAACGTACCAGTGCTTCGTTTTTGCGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGt > 1:4180359/1‑69 (MQ=255) cAGGAAACGTACCAGTGCTTCGTTTTTGCGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGAc < 1:1420577/71‑1 (MQ=255) ggAAACGTACCAGTGCTTCGTTTTTGCGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGt > 1:704073/1‑63 (MQ=255) gAAACGTACCAGTGCTTCGTTTTTGCGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACggg > 1:1569564/1‑71 (MQ=255) gAAACGTACCAGTGCTTCGTTTTTGCGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACggg > 1:2095929/1‑71 (MQ=255) | AGCCACTTCCAGAGTCGCGTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTGCGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGG > AP009048/3306930‑3307069 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |