| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 3316062 | 67 (1.190) | 3 (0.060) | 3/88 | NT | 5.1% | coding (1320/1488 nt) | nusA | transcription termination/antitermination L factor |
| ? | AP009048 | = 3316080 | 54 (1.110) | coding (1302/1488 nt) | nusA | transcription termination/antitermination L factor | |||||
TGCCCTGTTCGGCGAGATCTTCCAGCGTACAAACGCCACGGGCGGCCAGTTTGAATGCCAAATCACGATCTACCCCTTCAAGGTTCAGCAGATCGTCAGCCGGTTTGTTATCACCGAGGCTTTCTTCCTGGGCCTGTG > AP009048/3315992‑3316129 | tGCCCTGTTCGGCGAGATCTTCCAGCGTACAAACGCCACGGGCGGCCAGTTTGAATGCCAAATCACGATCT < 1:700921‑M1/71‑1 (MQ=255) gTTCGGCGAGATCTTCCAGCGTACAAACGCCACGGGCGGCCAGTTTGAATGCCAAATCACGATCTACCCCt > 1:837314/1‑71 (MQ=255) ggCGAGATCTTCCAGCGTACAAACGCCACGGGCGGCCAGTTTGAATGCCAAATCACGATCTACCCCTTCaa < 1:204637/71‑1 (MQ=255) ggCGAGATCTTCCAGCGTACAAACGCCACGGGCGGCCAGTTTGAATGCCAAATCACGATCTACCCCTTCa < 1:4538275/70‑1 (MQ=255) ggCGAGATCTTCCAGCGTACAAACGCCACGGGCGGCCAGTTTGAATGCCAAATCACGATCTACCCCTTCa < 1:4477432/70‑1 (MQ=255) cGAGATCTTCCAGCGTACAAACGCCACGGGCGGCCAGTTTGAATGCCAAATCACGATCTACCCCTTCAAgg < 1:4671952/71‑1 (MQ=255) gagaTCTTCCAGCGTACAAACGCTACGGGCGGCCAGTTTGAATGCCAAATCACGATCT < 1:1375846‑M1/58‑1 (MQ=255) gagaTCTTCCAGCGTACAAACGCCACGGGCGGCCAGTTTGAATGCCAAATCACGATCTACCCCTTCAAgg < 1:4539737/70‑1 (MQ=255) gagaTCTTCCAGCGTACAAACGCCACGGGCGGCCAGTTTGAATGCCAAATCACGATCTACCCCTTCAAGGt < 1:4085384/71‑1 (MQ=255) gaTCTTCCAGCGTACAAACGCCACGGGCGGCCAGTTTGAATGCCAAATCACGATCTACCCCTTCAAGGtt > 1:4108559/1‑70 (MQ=255) cTTCCAGCGTACAAACGCCACGGGCGGCCAGTTTGAATGCCAAATCACGATCTACCCCTTCAAGGTTcag > 1:2747755/1‑70 (MQ=255) cTTCCAGCGTACAAACGCCACGGGCGGCCAGTTTGAATGCCAAATCACGATCTACCCCTTCAAGGTTcag > 1:488980/1‑70 (MQ=255) ttCCAGCGTACAAACGCCACGGGCGGCCAGTTTGAATGCCAAATCACGATCTACCCCTTCa < 1:249716/61‑1 (MQ=255) ttCCAGCGTACAAACGCCACGGGCGGCCAGTTTGAATGCCAAATCACGATCTACCCCTTCAAGGTTcag > 1:2981990/1‑69 (MQ=255) ccAGCGTACAAACGCCACGGGCGGCCAGTTTGAATGCCAAATCACGATCTACCCCTTCAAGGtt > 1:875954/1‑64 (MQ=255) ccAGCGTACAAACGCCACGGGCGGCCAGTTTGAATGCCAAATCACGATCTACCCCTTCAAGGt < 1:226400/63‑1 (MQ=255) aGCGTACAAACGCCACGGGCGGCCAGTTTGAATGCCAAATCACGATCTACCCCTTCAAGGTTc > 1:2329701/1‑63 (MQ=255) aGCGTACAAACGCCACGGGCGGCCAGTTTGAATGCCAAATCACGATCTACCCCTTCAAGGTTc < 1:4181185/63‑1 (MQ=255) aGCGTACAAACGCCACGGGCGGCCAGTTTGAATGCCAAATCACGATCTACCCCTTCAAGGTTc > 1:3774121/1‑63 (MQ=255) gCGTACAAACGCCACGGGCGGCCAGTTTGAATGCCAAATCACGATCTACCCCTTCAAGGTTCAGCagatcg > 1:762047‑M2/1‑65 (MQ=255) gCGTACAAACGCCACGGGCGGCCAGTTTGAATGCCAAATCACGATCTACCCCTTCAAGGTTCAGCagatcg > 1:4216070‑M2/1‑65 (MQ=255) cGTACAAACGCCACGGGCGGCCAGTTTGAATGCCAAATCACGATCTACCCCTTCAAGGTTCAGCagatcgt < 1:2143717‑M2/71‑8 (MQ=255) gTACAAACGCCACGGGCGGCCAGTTTGAATGCCAAATCACGATCTa < 1:4674725/46‑1 (MQ=255) tACAAACGCCACGGGCGGCCAGTTTGAATGCCAAATCACGATCTACCCCTTCAAGGTTCAGCAGATCGTCa < 1:1600020/71‑1 (MQ=255) aaaCGCCACGGGCGGCCAGTTTGAATGCCAAATCACGATCTACCCCTTCAAGGTTCAGCAGATCGTCAGcc > 1:2911786/1‑71 (MQ=255) aaaCGCCACGGGCGGCCAGTTTGAATGCCAAATCACGATCTACCCCTTCAAGGTTCAGCAGATCGTCAGcc > 1:2905642/1‑71 (MQ=255) aaCGCCACGGGCGGCCAGTTTGAATGCCAAATCACGATCTACCCCTTCAAGGTTCAGCAGATCGTCa > 1:2247757/1‑67 (MQ=255) aaCGCCACGGGCGGCCAGTTTGAATGCCAAATCACGATCTACCCCTTCAAGGTTCAGCAGATCGTCa > 1:999736/1‑67 (MQ=255) aaCGCCACGGGCGGCCAGTTTGAATGCCAAATCACGATCTACCCCTTCAAGGTTCAGCAGATCGTCAGCCg > 1:3208516/1‑71 (MQ=255) aCGCCACGGGCGGCCAGTTTGAATGCCAAATCACGATCTACCCCTTCAAGGTTCAGCag > 1:4178894‑M2/1‑57 (MQ=255) cGCCACGGGCGGCCAGTTTGAATGCCAAATCACGATCTACCCCtt < 1:4518912/45‑1 (MQ=255) cGCCACGGGCGGCCAGTTTGAATGCCAAATCACGATCTACCCCTTCAAGGTTCAGCAGATCGTCAGCCGGt < 1:97039/71‑1 (MQ=255) gCCACGGGCGGCCAGTTTGAATGCCAAATCACGATCTACCCCTTCAAGGtt > 1:2246916/1‑51 (MQ=255) ccACGGGCGGCCAGTTTGAATGCCAAATCACGATCTACCCCTTCAAGGTTCAGCAGATCGTCAGCCGGttt < 1:352650/71‑1 (MQ=255) cACGGGCGGCCAGTTTGAATGCCAAATCACGATCTACCCCTTCAAGGTTCAGCAGATCGTCAGCCGGTTTg > 1:3594853/1‑71 (MQ=255) aCGGGCGGCCAGTTTGAATGCCAAATCACGATCTACCCCTTCAAGGTTCAGCAGATCGTCAGCCGGttt < 1:3178450/69‑1 (MQ=255) cGGGCGGCCAGTTTGAATGCCAAATCACGATCTACCCCTTCAAGGTTCAGCAGATCGTCAGCCGGTTTGtt < 1:511855/71‑1 (MQ=255) cGGGCGGCCAGTTTGAATGCCAAATCACGATCTACCCCTTCAAGGTTAAGCAGATCGTCAGCCGGTTTGt > 1:112135/1‑70 (MQ=255) cGGGCGGCCAGTTTGAATGCAAAATCACGATCTACCCCTTCAAGGTTCAGCAGATCGTCAGCCGGTTTGt > 1:1931897/1‑70 (MQ=255) ggcggcCAGTTTGAATGCCAAATCACGATCTACCCCTTCaa > 1:228397/1‑41 (MQ=255) ggcggcCAGTTTGAATGCCAAATCACGATCTACCCCTTCAAGGTTCAGCAGATCGTCAGCCGGTTTGTTAt < 1:3200047/71‑1 (MQ=255) ggcggcCAGTTTGAATGCCAAATCACGATCTACCCCTTCAAGGTTCAGCAGATCGTCAGCCGGTTTGTTAt > 1:4564121/1‑71 (MQ=255) ggcggcCAGTTTGAATGCCAAATCACGATCTACCCCTTCAAGGTTCAGCAGATCGTCAGCCGGTTTGTTAt < 1:261412/71‑1 (MQ=255) ggcggcCAGTTTGAATGCCAAATCACGATCTACCCCTTCAAGGTTCAGCAGATCGTCAGCCGGTTTGTTAt < 1:3925313/71‑1 (MQ=255) cggcCAGTTTGAATGCCAAATCACGATCTACCCCTTCAAGGTTCAGCAGATCGTCAGCCGGTTTGTTATCa < 1:3485040/71‑1 (MQ=255) gcCAGTTTGAATGCCAAATCACGATCTgctgaaccttgaaggg < 1:4314462‑M1/43‑17 (MQ=255) gcCAGTTTGAATGCCAAATCACGATCTACCCCTTCAAGGTTCAGCAGATCGTCAGCCGGTTTGTTATCAcc < 1:2908117/71‑1 (MQ=255) ccAGTTTGAATGCCAAATCACGATCTACCCCTTCa < 1:4934084/35‑1 (MQ=255) ccAGTTTGAATGCCAAATCACGATCTACCCCTTCAAGGTTCAGCAGATCGTCAGCCGGTTTGTTATCAcc < 1:1793770/70‑1 (MQ=255) cAGTTTGAATGCCAAATCACGATCTgctgaaccttgaaggggt > 1:420045‑M1/1‑25 (MQ=255) cAGTTTGAATGCCAAATCACGATCTACCCCTTCAAGGTTcag > 1:1981244/1‑42 (MQ=255) aGTTTGAATGCCAAATCACGATCTACCCCTTCAAGGTTcagc > 1:2559646/1‑42 (MQ=255) aGTTTGAATGCCAAATCACGATCTACCCCTTCAAGGTTCAGCAGATCGTCAGCCgg > 1:455653/1‑56 (MQ=255) aGTTTGAATGCCAAATCACGATCTACCCCTTCAAGGTTCAGCAGATCGTCAGCCGGTTTGTTATCAcc > 1:540875/1‑68 (MQ=255) aGTTTGAATGCCAAATCACGATCTACCCCTTCAAGGTTCAGCAGATCGTCAGCCGGTTTGTTATCACCGAg > 1:4098479/1‑71 (MQ=255) aGTTTGAATGCCAAATCACGATCTACCCCTTCAAGGTTCAGCAGATCGTCAGCCGGTTTGTTATCACCGAg > 1:1892282/1‑71 (MQ=255) aGTTTGAATGCCAAATCACGATCTACCCCTTCAAGGTTCAGCAGATCGTCAGCCGGTTTGTTATCACCGAg > 1:4564801/1‑71 (MQ=255) gTTTGAATGCCAAATCACGATCTgctgaaccttgaaggggtagatcg > 1:2862715‑M1/1‑23 (MQ=255) gTTTGAATGCCAAATCACGATCTACCCCTTCAAGGTTCAGCAGATCGTCAGCCGGTTTGTTATCACCGAgg > 1:3776262/1‑71 (MQ=255) gTTTGAATGCCAAATCACGATCTACCCCTTCAAGGTTCAGCAGATCGTCAGCCGGTTTGTTATCACCGAgg > 1:126768/1‑71 (MQ=255) gTTTGAATGCCAAATCACGATCTACCCCTTCAAGGTTCAGCAGATCGTCAGCCGGTTTGTTATCACCGAg > 1:1673566/1‑70 (MQ=255) tttGAATGCCAAATCACGATCTACCCCTTCAAGGTTCAGCagatcgt > 1:702051‑M2/1‑40 (MQ=255) tttGAATGCCAAATCACGATCTACCCCTTCAAGGTTCAGCag > 1:5120337‑M2/1‑40 (MQ=255) tttGAATGCCAAATCACGATCTACCCCTTCAAGGTTCAGCAGATCGTCAGCCGGttt < 1:3819344/57‑1 (MQ=255) tttGAATGCCAAATCACGATCTACCCCTTCAAGGTTCAGCAGATCGTCAGCCGGt > 1:684334/1‑55 (MQ=255) tttGAATGCCAAATCACGATCTACCCCTTCAAGGTTCAGCAGATCGTCAGCCGGTTTGTTATTACCGa > 1:4669730/1‑68 (MQ=255) tttGAATGCCAAATCACGATCTACCCCTTCAAGGTTCAGCAGATCGTCAGCCGGTTTGTTATCACCGa > 1:1158550/1‑68 (MQ=255) ttGAATGCCAAATCACGATCTACCCCTTCAAGGTTCAGCAGATCGTCAGCCgg > 1:1824531/1‑53 (MQ=255) tGAATGCCAAATCACGATCTACCCCTTCAAGGTTcag < 1:654451/37‑1 (MQ=255) tGAATGCCAAATCACGATCTACCCCTTCAAGGTTCAGCag < 1:927292‑M2/40‑3 (MQ=255) aTGCCAAATCACGATCTACCCCTTCAAGGTTCAGCAGATCGTCAGCCGGTTTGTTATCACCGAGGCttt < 1:2368020/69‑1 (MQ=255) tGCCAAATCACGATCTACCCCTTCAAGGTTCAGCaga > 1:684665‑M2/1‑34 (MQ=255) cAAATCACGATCTACCCCTTCAAGGTTCAGCAGATCGTCAGCCGGTTTGtt < 1:2017067/51‑1 (MQ=255) aaaTCACGATCTACCCCTTCAAGGTTCAGCAGATCGTCAGCCGGTTTGTTATCACCGAGGCTTTCTTcc < 1:599589/69‑1 (MQ=255) aaaTCACGATCTACCCCTTCAAGGTTCAGCAGATCGTCAGCCGGTTTGTTATCACCGAGGCTTTCTTCCTg < 1:4406356/71‑1 (MQ=255) aaTCACGATCTACCCCTTCAAGGTTCAGCAGATCGTCa > 1:4877125/1‑38 (MQ=255) aaTCACGATCTACCCCTTCAAGGTTCAGCAGATCGTCAGCCGGTTTGTTATCACCGAGGCTTTCTTCCTgg < 1:1269188/71‑1 (MQ=255) aTCACTATCTACCCCTTCAAGGTTCAGCAGATCGTCAGCCTGTTTg < 1:4137576/46‑1 (MQ=38) aTCACGATCTACCCCTTCAAGGTTCAGCAGATCGTCAg > 1:3982642/1‑38 (MQ=255) aTCACGATCTACCCCTTCAAGGTTCAGCAGATCGTCAGCCGGTTTg < 1:4344046/46‑1 (MQ=255) aTCACGATCTACCCCTTCAAGGTTCAGCAGATCGTCAGCCGGTTTGTTATc < 1:4798530/51‑1 (MQ=255) aCGATCTgctgaaccttgaaggggtagatcgtgatttggcattcaaactggccgcccgtggcgtttgtacg < 1:2143717‑M1/71‑65 (MQ=255) aCGATCTgctgaaccttgaaggggtagatcgtgatttggcattcaaa > 1:702051‑M1/1‑7 (MQ=255) cGATCTgctgaaccttgaaggggtagatcgtgatttggcattcaaactggccgcccgtggcgtttgtacgc > 1:762047‑M1/1‑6 (MQ=255) cGATCTgctgaaccttgaaggggtagatcgtgatttggcattcaaactggccgcccgtggcgtttgtacgc > 1:4216070‑M1/1‑6 (MQ=255) cGATCTACCCCTTCAAGGTTCAGCagatcgtgatttggcattcaaac > 1:2862715‑M2/1‑24 (MQ=255) gATCTACCCCTTCAAGGTTCAGCAGATCGTCAGCCGGTTTGTTAt > 1:2888635/1‑45 (MQ=255) tCTgctgaaccttgaaggggtagatcgtgatttggca > 1:684665‑M1/1‑3 (MQ=255) tCTACCCCTTCAAGGTTCAGCAGATCGTCAGCCGGTTTGTTAt > 1:1893133/1‑43 (MQ=255) tCTACCCCTTCAAGGTTCAGCAGATCGTCAGCCGGTTTGTTATCACCGAGGCTTTCTTCCTGGGCCtgtg > 1:2941303/1‑70 (MQ=255) tCTACCCCTTCAAGGTTCAGCAGATCGTCAGCCGGTTTGTTATCACCGAGGCTTTCTTCCTGGGCCtgtg > 1:3947493/1‑70 (MQ=255) tCTACCCCTT‑AAGGTTCAGCAGATCGTCAGCCGGTTTGTTAt > 1:2636700/1‑42 (MQ=38) ctgctgaaccttgaaggggtagatcgtgatttggcattcaaactggccgcccgtggcgt > 1:4178894‑M1/1‑2 (MQ=255) ctgctgaaccttgaaggggtagatcgtgatttggcattcaaa > 1:5120337‑M1/1‑2 (MQ=255) ctgctgaaccttgaaggggtagatcgtgatttggcattca < 1:927292‑M1/40‑39 (MQ=255) | TGCCCTGTTCGGCGAGATCTTCCAGCGTACAAACGCCACGGGCGGCCAGTTTGAATGCCAAATCACGATCTACCCCTTCAAGGTTCAGCAGATCGTCAGCCGGTTTGTTATCACCGAGGCTTTCTTCCTGGGCCTGTG > AP009048/3315992‑3316129 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |