| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 3750590 | 0 (0.000) | 46 (0.890) | 34/94 | NT | 100% | intergenic (‑104/‑69) | tnaA/insH | tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent/IS5 element protein |
| ? | AP009048 | 3751790 = | 0 (0.000) | intergenic (+151/+116) | insH/tnaC | IS5 element protein/tryptophanase leader peptide | |||||
CCTGTGAATATTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCAT > AP009048/3750522‑3750660 | ccTGTGAATATTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAa < 1:4771417‑M1/70‑2 (MQ=255) tatTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaa > 1:1044881‑M1/1‑61 (MQ=255) tatTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaa > 1:4986980‑M1/1‑61 (MQ=255) ttACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaat > 1:4921826‑M1/1‑59 (MQ=255) ttACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaat > 1:4047464‑M1/1‑59 (MQ=255) ttACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAa < 1:3703239‑M1/60‑2 (MQ=255) tACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAa < 1:3203562‑M1/59‑2 (MQ=255) aCATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataa < 1:791640‑M1/70‑14 (MQ=255) aCATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaag > 1:1952590‑M1/1‑57 (MQ=255) cTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagttaataaacg < 1:586801‑M1/69‑17 (MQ=255) tGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacga > 1:1426874‑M1/1‑52 (MQ=255) tGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaac > 1:3709454‑M1/1‑52 (MQ=255) cTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacga < 1:1032216‑M1/67‑18 (MQ=255) ataCCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagat > 1:365094‑M1/1‑48 (MQ=255) ataCCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaata < 1:4522312‑M1/60‑13 (MQ=255) ccGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacc > 1:3035345‑M1/1‑45 (MQ=255) cGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacct < 1:2354281‑M1/71‑28 (MQ=255) gATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctt > 1:1573023‑M1/1‑43 (MQ=255) gATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctt < 1:3375577‑M1/71‑29 (MQ=255) aTTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgaccttt > 1:2504108‑M1/1‑42 (MQ=255) aaTTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgc > 1:4445788‑M1/1‑39 (MQ=255) aTTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaa < 1:3678120‑M1/71‑34 (MQ=255) aTTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaa < 1:79376‑M1/71‑34 (MQ=255) aTTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaa < 1:4746502‑M1/71‑34 (MQ=255) ttCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgtaaa < 1:5009052‑M1/71‑35 (MQ=255) ttCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaa < 1:3981643‑M1/71‑35 (MQ=255) ttCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaa < 1:3315813‑M1/71‑35 (MQ=255) cGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaa < 1:626640‑M1/70‑36 (MQ=255) gCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgca > 1:3786637‑M1/1‑34 (MQ=255) atatatatGCAAGCACCATCATTTACTAAaacaagtaaataaac > 1:2495368‑M1/1‑29 (MQ=255) atatatGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaat > 1:3045019‑M1/1‑27 (MQ=255) tatatGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaatta < 1:995289‑M1/71‑46 (MQ=255) tatatGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaatt < 1:1510107‑M1/70‑45 (MQ=255) tatatGCAAGCACCATCATTTACTAAaacaagtaaataaacgagag < 1:232150‑M1/46‑21 (MQ=255) tatatGCAAGCACCATCATTTACTAAaacaagtaaataaacgagag < 1:77130‑M1/46‑21 (MQ=255) atatGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaatta < 1:2533764‑M1/70‑46 (MQ=255) atatGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaatt > 1:345562‑M1/1‑25 (MQ=255) tatGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacct < 1:4025805‑M1/51‑28 (MQ=255) tatGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagat > 1:1143916‑M1/1‑24 (MQ=255) atGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaatt > 1:4709736‑M1/1‑23 (MQ=255) atGCAAGCACCATCATTTACTAAaacaagtaaataaa > 1:4501106‑M1/1‑23 (MQ=255) tGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaa < 1:3507139‑M1/62‑41 (MQ=255) aaGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagata > 1:4837235‑M1/1‑19 (MQ=255) gCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatag > 1:4034937‑M1/1‑17 (MQ=255) gCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatag > 1:1664550‑M1/1‑17 (MQ=255) aCCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagc > 1:3228146‑M1/1‑15 (MQ=255) aCCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaa > 1:1630108‑M1/1‑15 (MQ=255) atcatTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagcaaac > 1:508377‑M1/1‑12 (MQ=255) tcatTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaatta > 1:802388‑M1/1‑11 (MQ=255) catTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagcaaacaa < 1:2588115‑M1/70‑61 (MQ=255) atTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagcaaacaaa > 1:1255439‑M1/1‑9 (MQ=255) atTTACTAAaacaagtaaataaacgagagatgacctttgcaaaa < 1:36617‑M1/44‑36 (MQ=255) tACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagcaaacaaa > 1:4092678‑M1/1‑6 (MQ=255) tACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagcaaacaaa > 1:4924588‑M1/1‑6 (MQ=255) aCTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagcaaacaaa > 1:1611155‑M1/1‑5 (MQ=255) cTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagcaaacaaatagat < 1:2490955‑M1/70‑67 (MQ=255) tAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagcaaacaaataga < 1:3499769‑M1/68‑66 (MQ=255) aaaacaagaaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagcaaacaaatagatca > 1:3330853‑M1/1‑2 (MQ=255) aaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagcaaacaaatagatcaca > 1:1163134‑M1/1‑1 (MQ=255) aaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagcaaacaaatagatcaca > 1:293766‑M1/1‑1 (MQ=255) aaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagcaaacaaatagatcaca > 1:4051130‑M1/1‑1 (MQ=255) aaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagcaaacaaatagatcaca > 1:172000‑M1/1‑1 (MQ=255) aaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaaga < 1:4065644‑M1/49‑49 (MQ=255) | CCTGTGAATATTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCAT > AP009048/3750522‑3750660 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |