| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 4194825 | 65 (1.160) | 3 (0.060) | 3/92 | NT | 5.1% | coding (7/354 nt) | rplR | 50S ribosomal subunit protein L18 |
| ? | AP009048 | = 4194838 | 53 (1.040) | coding (20/354 nt) | rplR | 50S ribosomal subunit protein L18 | |||||
TTCGTTACGCCGACGAAGTCGTGCGTACCAAAGAGGCTAAGAAGAAGTAAGGTAACACTATGGATAAGAAATCTGCTCGTATCCGTCGTGCGACCCGCGCACGCCGCAAGCTCCAGGAGCTGGGCGCAACTCGCCT > AP009048/4194760‑4194895 | ttCGTTACGCCGACGAAGTCGTGCGTACCAAAGAGGCTAAGAAGAAGTAAGGTAACACTATGGATAAGaaa > 1:4616124/1‑71 (MQ=255)ttCGTTACGCCGACGAAGTCGTGCGTACCAAAGAGGCTAAGAAGAAGTAAGGTAACACTATGGATAAGaa < 1:3326719/70‑1 (MQ=255) tCGTTACGCCGACGAAGTCGTGCGTACCAAAGAGGCTAAGAAGAAGTAAGGTAACACTATGGATAAGAAAt > 1:1014024/1‑71 (MQ=255) gTTACGCCGACGAAGTCGTGCGTACCAAAGAGGCTAAGAAGAAGTAAGGTAACACTATGGATAAg < 1:4493504/65‑1 (MQ=255) ttACGCCGACGAAGTCGTGCGTACCAAAGAGGCTAAGAAGAAGTAAGGTAACACTATGGATAAGAAATCTg > 1:1465966/1‑71 (MQ=255) aCGCCGACGAAGTCGTGCGTACCAAAGATGCTAAGAAGAAGTAAGGTAACACTATGGATaa > 1:515155/1‑61 (MQ=255) aCGCCGACGAAGTCGTGCGTACCAAAGAGGCTAAGAAGAAGTAAGGTAACACTATGGATAAGAAATCTGCt > 1:1653304/1‑71 (MQ=255) aCGCCGACGAAGTCGTGCGTACCAAAGAGGCTAAGAAGAAGTAAGGTAACACTACGGATAcgagcagatt < 1:535205‑M1/70‑11 (MQ=255) cGCCGACGAAGTCGTGCGTACCAAAGAGGCTAAGAAGAAGTAAGGTAACACTATGGATAAGAAATCTGCt < 1:782398/70‑1 (MQ=255) cGCCGACGAAGTCGTGCGTACCAAAGAGGCTAAGAAGAAGTAAGGTAACACTATGGATAAGAAATCTGCTc < 1:4446741/71‑1 (MQ=255) cgacgaAGTCGTGCGTACCAAAGAGGCTAAGAAGAAGTAAGGTAACACTATGGATAAGAAATCTGCTc > 1:649747/1‑68 (MQ=255) gacgaAGTCGTGCGTACCAAAGAGGCTAAGAAGAAGTAAGGTAACACTATGGATAAGaa < 1:2499615/59‑1 (MQ=255) cgaAGTCGTGCGTACCAAAGAGGCTAAGAAGAAGTAAGGTAACACTATGGATAAGAAATCTGCTCGtatcc < 1:3815489‑M2/71‑6 (MQ=255) gaAGTCGTGCGTACCAAAGAGGCTAAGAAGAAGTAAGGTAACACTATGGATAAGAAATCTGCTCGta > 1:5076704‑M2/1‑65 (MQ=255) gaAGTCGTGCGTACCAAAGAGGCTAAGAAGAAGTAAGGTAACACTATGGATAAGAAATCTGCTCGTATCcg < 1:4472545/71‑1 (MQ=255) aGTCGTGCGTACCAAAGAGGCTAAGAAGAAGTAAGGTAACACTATGGATAcgagcagatttcttatccat < 1:2307026‑M1/70‑21 (MQ=255) aGTCGTGCGTACCAAAGAGGCTAAGAAGAAGTAAGGTAACACTATGGATAAGAAATCTGCTCGTATAcgtc > 1:2308637/1‑71 (MQ=255) gTCGTGCGTACCAAAGAGGCTAAGAAGAAGTAAGGTAACACTATGGATAAGAAATCTGCTCGTATCcgtcg < 1:116115/71‑1 (MQ=255) tCGTGCGTACCAAAGAGGCTAAGAAGAAGTAAGGTAACACTATGGATAAGAAATCTGCt < 1:1327523/59‑1 (MQ=255) cGTGCGTACCAAAGAGGCTAAGAAGAAGTAAGGTAACACTATGGATAAGAAATCTGCTCGTATCCGTCGTg > 1:2803028/1‑71 (MQ=255) gTGCGTACCAAAGAGGCTAAGAAGAAGTAAGGTAACACTATGGATAAGAAATCTGCTCGTATCcgtcg > 1:722302/1‑68 (MQ=255) gTGCGTACCAAAGAGGCTAAGAAGAAGTAAGGTAACACTATGGATAAGAAATCTGCTCGTATCCGTCGTg > 1:4884337/1‑70 (MQ=255) gTGCGTACCAAAGAGGCTAAGAAGAAGTAAGGTAACACTATGGATAAGAAATCTGCTCGTATCCGTCGTg < 1:525066/70‑1 (MQ=255) gTGCGTACCAAAGAGGCTAAGAAGAAGTAAGGTAACACTATGGATAAGAAATCTGCTCGTATCCGTCGTGc < 1:250680/71‑1 (MQ=255) cGTACCAAAGAGGCTAAGAAGAAGTAAGGTAACACTATGGATAAGAAATCt > 1:1490765/1‑51 (MQ=255) cGTACCAAAGAGGCTAAGAAGAAGTAAGGTAACACTATGGATAAGAAATCt > 1:3915391/1‑51 (MQ=255) cGTACCAAAGAGGCTAAGAAGAAGTAAGGTAACACTATGGATAAGAAATCTGCTCGTATCCGTCGTGCGa < 1:1864754/70‑1 (MQ=255) cGTACCAAAGAGGCTAAGAAGAAGTAAGGTAACACTATGGATAAGAAATCTGCTCGTATCCGGCGTGCGa < 1:4502157/70‑1 (MQ=255) tACCAAAGAGGCTAAGAAGAAGTAAGGTAACACTATGGATAAGAAATCTGCTCGTATCcgtc < 1:4347121/62‑1 (MQ=255) aCCAAAGAGGCTAAGAAGAAGTAAGGTAACACTATGGATAAGAAATCTGCTCGTATCCGTCGTGCGAccc < 1:3849201/70‑1 (MQ=255) ccAAAGAGGCTAAGAAGAAGTAAGGTAACACTATGGATAAGAAAt > 1:2492196/1‑45 (MQ=255) ccAAAGAGGCTAAGAAGAAGTAAGGTAACACTATGGATAAGAAATCTGCTCGtatcc < 1:4646315‑M2/57‑6 (MQ=255) ccAAAGAGGCTAAGAAGAAGTAAGGTAACACTATGGATAAGAAATCTGCTCGTATCCGTCGTGCGAc > 1:4870964/1‑67 (MQ=255) ccAAAGAGGCTAAGAAGAAGTAAGGTAACACTATGGATAAGAAATCTGCTCGTATCCGTCGTGCGAc > 1:1555996/1‑67 (MQ=255) ccAAAGAGGCTAAGAAGAAGTAAGGTAACACTATGGATAAGAAATCTGCTCGTATCCGTCGTGCGACCcg < 1:2816473/70‑1 (MQ=255) cAAAGAGGCTAAGAAGAAGTAAGGTAACACTATGGATAAGAAATCTGCTCGTATCcgtcg < 1:2784204/60‑1 (MQ=255) cAAAGAGGCTAAGAAGAAGTAAGGTAACACTATGGATAAGAAATCTGCTCGTATCCGTCGTGCGACCcgcg < 1:230932/71‑1 (MQ=255) cAAAGAGGCTAAGAAGAAGTAAGGTAACACTATGGATAAGAAATCTGCTCGTATCCGTCGTGCGACCcgcg < 1:434846/71‑1 (MQ=255) aaaGAGGCTAAGAAGAAGTAAGGTAACACTATGGATAAGAAATCTGCTCGtatc < 1:1130581‑M2/54‑5 (MQ=255) aaaGAGGCTAAGAAGAAGTAAGGTAACACTATGGATAAGAAATCTGCTCGTATCCGTCGTGCGACCcgcg > 1:2771781/1‑70 (MQ=255) aaGAGGCTAAGAAGAAGTAAGGTAACACTATGGATAAGAAATCTGCTCGTATCcgtc < 1:3162466/57‑1 (MQ=255) aaGAGGCTAAGAAGAAGTAAGGTAACACTATGGATAAGAAATCTGCTCGTATCCGTCGTGCGACCCGCGCa > 1:3008410/1‑71 (MQ=255) aaGAGGCTAAGAAGAAGTAAGGTAACACTATGGATAAGAAATCTGCTCGTATCCGTCGTGCGACCCGCGCa > 1:2016064/1‑71 (MQ=255) agagGCTAAGAAGAAGTAAGGTAACACTATGGATAAGAAATCTGCTCGTATCCGTCGTGCGACCCGCGCAc > 1:3528533/1‑71 (MQ=255) gagGCTAAGAAGAAGTAAGGTAACACTATGGATAAGAAATCTGCTCGTATCCGTCGTGCGACCCGCGCAcg > 1:3958891/1‑71 (MQ=255) cTAAGAAGAAGTAAGGTAACACTATGGATAAGAAATCTGCTCGTATCCGTCGTGCGACCCGCGCAcgccgc < 1:3019351/71‑1 (MQ=255) tAAGAAGAAGTAAGGTAACACTATGGATAAGAAATCTGCTCGTATCCGTCGTGCGACCCGCGCAcgccgc > 1:2452667/1‑70 (MQ=255) tAAGAAGAAGTAAGGTAACACTATGGATAAGAAATCTGCTCGTATCCGTCGTGCGACCCGCGCAcgccgc > 1:2149695/1‑70 (MQ=255) aagaagaagTAAGGTAACACTATGGATAAGAAATCTGCTCGTATCCGTCGTGCGACCCGCGCAcgc > 1:692418/1‑66 (MQ=255) agaagaagTAAGGTAACACTATGGATAAGAAATCTGc < 1:1694531/37‑1 (MQ=255) gaagaagTAAGGTAACACTATGGATAAGAAATCTGCTCGTATCCGTCGTGCg < 1:4777837/52‑1 (MQ=255) gaagaagTAAGGTAACACTATGGATAAGAAATCTGCTCGTATCCGTCGTGCg < 1:49965/52‑1 (MQ=255) gaagaagTAAGGTAACACTATGGATAAGAAATCTGCTCGTATCCGTCGTGCGAc > 1:2932504/1‑54 (MQ=255) gaagaagTAAGGTAACACTATGGATAAGAAATCTGCTCGTATCCGTCGTGCGACCCGCGCACGCCGCAAGc > 1:1679372/1‑71 (MQ=255) aagaagTAAGGTAACACTATGGATAcgagcagatttcttatc > 1:3451551‑M1/1‑25 (MQ=255) aagaagTAAGGTAACACTATGGATAAGAAATCTGCTc > 1:4166511/1‑37 (MQ=255) aagaagTAAGGTAACACTATGGATAAGAAATCTGCTCGTATCCGTCGTGCg < 1:4071405/51‑1 (MQ=255) aagaagTAAGGTAACACTATGGATAAGAAATCTGCTCGTATCCGTCGTGCGACCCGCGCAcg > 1:3202930/1‑62 (MQ=255) agaagTAAGGTAACACTATGGATAAGAAATCTGCTCGTATCCGTCGTGCGACCCGCGCACGCCGCAAGCTc > 1:4071731/1‑71 (MQ=255) agaagTAAGGTAACACTATGGATAAGAAATCTGCTCGTATCCGTCGTGCGACCCGCGCACGCCGCAAGCTc < 1:4181279/71‑1 (MQ=255) agTAAGGTAACACTATGGATAAGAAATCTGCTCGTATCCGTCGTGCGACCcgcg < 1:2674110/54‑1 (MQ=255) gTAAGGTAACACTATGGATAAGAAATCTGCTCGTATCCGTCGTGCGACCCGCGCACGCCGCAAGCTCCAgg < 1:1148082/71‑1 (MQ=255) tAAGGTAACACTATGGATAAGAAATCTGCTCGTATCcgt < 1:738658/39‑1 (MQ=255) aaGGTAACACTATGGATAAGAAATCTGCTCGTATCCGTCGTGCGACCCGCGCACGCCGCAAGCTCCAGGAg > 1:846994/1‑71 (MQ=255) aaGGTAACACTATGGATAAGAAATCTGCTCGTATCCGTCGTGCGACCCGCGCACGCCGCAAGCTCCAGGAg > 1:842710/1‑71 (MQ=255) aGGTAACACTATGGATAAGAAATCTGCTCGTATCcg < 1:4090659/36‑1 (MQ=255) aGGTAACACTATGGATAAGAAATCTGCTCGTATCCGTCGTGCGACCCGCGCACGCCGCAAGCTCCAGGAg < 1:4486426/70‑1 (MQ=255) aGGTAACACTATGGATAAGAAATCTGCTCGTATCCGTCGTGCGACCCGCGCACGCCGCAAGCTCCAGGAGc > 1:1345322/1‑71 (MQ=255) ggTAACACTATGGATAAGAAATCTGCTCGTATCCGTCGTGCGACCCGCGCACGCCGCAAGCTCCAGGAGCt < 1:1977757/71‑1 (MQ=255) ggTAACACTATGGATAAGAAATCTGCTCGTATCCGTCGTGCGACCCGCGCACGCCGCAAGCTCCAGGAGCt < 1:4185329/71‑1 (MQ=255) gTAACACTATGGATAAGAAATCTGCTCGTATCCGTCGTGCGACCCGCGCACGCCGCAAGCTCCAGGAGCTg < 1:2728783/71‑1 (MQ=255) tAACACTATGGATAAGAAATCTGCTCGTATCcgtc > 1:33539/1‑35 (MQ=255) tAACACTATGGATAAGAAATCTGCTCGTATCCGTCGTGCGACCCGCGCACGCCGCAAGCTCCAGGAGCTgg < 1:2397018/71‑1 (MQ=255) cTATGGATAAGAAATCTGCTCGTATCCGTCGTGCGACCCGCGCACGCCGCAAGCTCCAGGAGCTgg < 1:3461583/66‑1 (MQ=255) tATGGATAAGAAATCTGCTCGTATCCGTCGTGCGACCcg < 1:125115/39‑1 (MQ=255) aTGGATAAGAAATCTGCTCGtatccatagtgttaccttacttcttcttagcctctttggtacgcacgact < 1:2307026‑M2/70‑51 (MQ=255) tGGATAAGAAATCTGCTCGTATCCGTCGTGCGACCCGCGCACGCCGCAAGCTCCAGGAGCTGGGCGCaa < 1:2697577/69‑1 (MQ=255) tGGATAAGAAATCTGCTCGTATCCGTCGTGCGACCCGCGCACGCCGCAAGCTCCAGGAGCTGGGCGCAACt > 1:3431089/1‑71 (MQ=255) ggATAcgagcagatttcttatccatagtgttaccttacttcttcttagcctctttggtacgcacgacttcg < 1:3815489‑M1/71‑67 (MQ=255) ggATAcgagcagatttcttatccatagtgttaccttacttcttcttagcctctttgg < 1:4646315‑M1/57‑53 (MQ=255) gATAcgagcagatttcttatccatagtgttaccttacttcttcttagcctcttt < 1:1130581‑M1/54‑51 (MQ=255) gATAAGAAATCTGCTCGtatccatagtgttaccttacttctt > 1:3451551‑M2/1‑17 (MQ=255) gATAAGAAATCTGCTCGTATCCGTCGTGCGACCCGCGCACGCCGCAAGCTCCAGGAGCTGGGCGCAACTCg > 1:3558112/1‑71 (MQ=255) gATAAGAAATCTGCTCGTATCCGTCGTGCGACCCGCGCACGCCGCAAGCTCCAGGAGCTGGGCGCAACTCg > 1:325039/1‑71 (MQ=255) aTAAGAAATCTGCTCGTATCCGTCGTGCGACCCGCGCACGCCGCAAGCTCCAGGAGCTGGGCGCAACTc < 1:591199/69‑1 (MQ=255) aTAAGAAATCTGCTCGTATCCGTCGTGCGACCCGCGCACGCCGCAAGCTCCAGGAGCTGGGCGCAACTCGc < 1:2484216/71‑1 (MQ=255) tAcgagcagatttcttatccatagtgttaccttacttcttcttagcctctttggtacgcacgacttc > 1:5076704‑M1/1‑2 (MQ=255) tAAGAAATCTGCTCGTATCCGTCGTGCGACCCGCGCACGCCGCAAGCTCCAGGAGCTGGGCGCAACTCGcc < 1:3574649/71‑1 (MQ=255) aaGAAATCTGCTCGTATCTGTCGTGCGACCCGCGCACGCTGCAAGCTCCAGGAGCTGGGCGCAACTCGCCt > 1:4814123/1‑71 (MQ=255) aaGAAATCTGCTCGTATCCGTCGTGCGACCCGCGCACGCCGCAAGCTCCAGGAGCTGGGCGCAACTCGCCt > 1:3633861/1‑71 (MQ=255) | TTCGTTACGCCGACGAAGTCGTGCGTACCAAAGAGGCTAAGAAGAAGTAAGGTAACACTATGGATAAGAAATCTGCTCGTATCCGTCGTGCGACCCGCGCACGCCGCAAGCTCCAGGAGCTGGGCGCAACTCGCCT > AP009048/4194760‑4194895 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |