| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 70061 = | 52 (0.920) | 26 (0.590) +CGCGTACAACT |
17/80 | NT | 32.1% | intergenic (‑13/‑326) | araB/araC | L‑ribulokinase/DNA‑binding transcriptional dual regulator |
| ? | AP009048 | 236044 = | 88 (1.560) | intergenic (‑42/‑23) | rnhA/dnaQ | ribonuclease HI, degrades RNA of DNA‑RNA hybrids/DNA polymerase III epsilon subunit | |||||
Only 100 of 141 total aligned reads displayed.
TCGGTGAAAATTTCTACCTGTTTAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATACCGAAACCACC > AP009048/235974‑236114 | tcctacctgacgctttttatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactc < 1:2237110‑M2/1‑1 (MQ=255) tGAAAATTTCTACCTGTTTAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGt < 1:4251031/71‑1 (MQ=255) aaaaTTTCTACCTGTTTAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCt > 1:5162170/1‑71 (MQ=255) aaaTTTCTACCTGTTTAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCt > 1:1818365/1‑70 (MQ=255) aaaTTTCTACCTGTTTAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCt < 1:1571423/70‑1 (MQ=255) cgctttttatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTc > 1:4065979‑M2/61‑66 (MQ=255) cgctttttatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACa < 1:296868‑M2/11‑1 (MQ=255) tCTACCTGTTTAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACAt < 1:3081601/70‑1 (MQ=255) ctttttatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATa < 1:1872779‑M2/13‑1 (MQ=255) ctttttatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATa < 1:1923813‑M2/13‑1 (MQ=255) cTACCTGTTTAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATa > 1:2652434/1‑70 (MQ=255) aCCTGTTTAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAAt > 1:371111/1‑71 (MQ=255) ttatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAAt > 1:1491818‑M2/55‑70 (MQ=255) ttatcgcaactctctactgtttctccatacccgtttttttggacgcatacaactCAAGTCTGAc > 1:1744713‑M2/55‑64 (MQ=255) ccTGTTTAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAg < 1:4972005/58‑1 (MQ=255) ccTGTTTAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATaa < 1:777758/68‑1 (MQ=255) ccTGTTTAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATaa < 1:4053458/68‑1 (MQ=255) cTGTTTAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGa > 1:331107/1‑71 (MQ=255) cTGTTTAAACATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCAGACATAAATGa > 1:2420314/1‑71 (MQ=255) tGTTTAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAGCGACAAGTCTGACATAAATGAc > 1:4537233/1‑71 (MQ=255) atcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGAc > 1:3596030‑M2/53‑71 (MQ=255) tttAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTg < 1:1643744/58‑1 (MQ=255) tttAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTg < 1:174408/58‑1 (MQ=255) tttAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTg < 1:2103992/58‑1 (MQ=255) tttAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCg < 1:4220793/71‑1 (MQ=255) tttAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCg < 1:837886/71‑1 (MQ=255) aaGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCt < 1:3952391/70‑1 (MQ=255) aGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGa > 1:2474295/1‑64 (MQ=255) gCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACaa < 1:2944005/48‑1 (MQ=255) gCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTAt > 1:770339/1‑70 (MQ=255) gCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTAt > 1:4477294/1‑70 (MQ=255) gCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTAt > 1:2822581/1‑70 (MQ=255) aTCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACa > 1:765495/1‑54 (MQ=255) aTCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAg > 1:57837/1‑71 (MQ=255) aTCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAg > 1:2596579/1‑71 (MQ=255) tctGGTATACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGAc > 1:2723328/1‑59 (MQ=255) tctGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCt < 1:3022721/63‑1 (MQ=255) tctGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCAc > 1:2891668/1‑71 (MQ=255) tGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCa < 1:54057/68‑1 (MQ=255) ctgtttctccatacccgtttttttggacgcgtacaactCa > 1:396659‑M2/39‑40 (MQ=255) gtttctccatacccgtttttttggacgcgtacaactCAAGTCt > 1:986157‑M2/37‑43 (MQ=255) gTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACt < 1:339916/68‑1 (MQ=255) tttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCaa < 1:1112097‑M2/36‑1 (MQ=255) tAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTAt > 1:2945355/1‑60 (MQ=255) tAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTAt > 1:1190203/1‑60 (MQ=255) tAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGc < 1:1210619/69‑1 (MQ=255) ttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGc > 1:4874424‑M2/35‑68 (MQ=255) ttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAAt > 1:3670619‑M2/35‑71 (MQ=255) ttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAAt > 1:447394‑M2/35‑71 (MQ=255) aGACTTCCTGTAATTGAATCGAACTGTAAAACGAGAAGTCTGACATAAATGACCGCTATGAGCACTGCAAt > 1:3606232/1‑71 (MQ=255) gACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAAtt < 1:825618/71‑1 (MQ=255) tccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTa > 1:367234‑M2/32‑70 (MQ=255) ttCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGa < 1:259101/48‑1 (MQ=255) ttCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTa > 1:4836439/1‑54 (MQ=255) ccTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATa < 1:4167423/41‑1 (MQ=255) ccTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATa < 1:4093959/41‑1 (MQ=255) tacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGc > 1:1438281‑M2/28‑71 (MQ=255) gTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCt < 1:1004177/48‑1 (MQ=255) ccgtttttttggacgcgtacaactCAAGTCTGACATa < 1:1835561‑M2/13‑1 (MQ=255) aTTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGAcc > 1:788694/1‑42 (MQ=255) aTTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTa > 1:523822/1‑46 (MQ=255) aTTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTa > 1:2472042/1‑46 (MQ=255) tttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGAt < 1:2710301‑M2/49‑1 (MQ=255) ttGAATCGAACTGTAAAACGACAAGTCTGACATaa < 1:80345/35‑1 (MQ=255) ttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCg > 1:3234137‑M2/21‑71 (MQ=255) tttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGt > 1:4491311‑M2/20‑71 (MQ=255) gAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCg < 1:757307/70‑1 (MQ=255) ttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTtc < 1:100377‑M2/54‑1 (MQ=255) tCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTtct > 1:4560483/1‑71 (MQ=255) cGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCa > 1:3556577/1‑45 (MQ=255) cGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCa > 1:125761/1‑45 (MQ=255) cGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACTCCAGAt < 1:1416551/64‑1 (MQ=255) cGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGAt < 1:5182180/64‑1 (MQ=255) ggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTtctc < 1:2169335‑M2/56‑1 (MQ=255) ggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTtc < 1:4807280‑M2/54‑1 (MQ=255) gaccTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTtct > 1:2220400/4‑69 (MQ=255) gacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTcgc < 1:1485117‑M2/58‑2 (MQ=255) aaCTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGa < 1:987684/71‑1 (MQ=255) cTGTAAAACGACAAGTCTGACATAAATGACCGCTAt > 1:5133701/1‑36 (MQ=255) cTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATa > 1:2019389/1‑71 (MQ=255) cTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATa > 1:919177/1‑71 (MQ=255) cTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATa > 1:3183929/1‑71 (MQ=255) gcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTtct > 1:2162592‑M2/11‑65 (MQ=255) tAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTtctc < 1:3035871/64‑1 (MQ=255) tAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATa > 1:1052825/1‑68 (MQ=255) tAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATAcc < 1:3709360/70‑1 (MQ=255) tAAAACGACAAGTCTGACATAAATGACCGCTATGAGAACTGCAATTACACGCCAGATCGTtctc < 1:1222904/64‑1 (MQ=255) tacaactCAAGTCTGACATAAATGACCGCTATGAGCACt < 1:3884339‑M2/32‑1 (MQ=255) aaaaCGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATAcc < 1:868003/69‑1 (MQ=255) aaaCGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATACCGaa < 1:1971051/71‑1 (MQ=255) aaaCGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATACCGaa < 1:4373971/71‑1 (MQ=255) aaaCGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATACCGa < 1:600126/70‑1 (MQ=255) aaaCGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATACCGa < 1:2967882/70‑1 (MQ=255) aactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGCAac > 1:1115160‑M2/5‑71 (MQ=255) aCGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATACCGAAac > 1:1824402/1‑71 (MQ=255) aCAAGTCTGACATAAATGACCGCTATGAGCACTGc < 1:3395143/35‑1 (MQ=255) aCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGAt < 1:1620507/60‑1 (MQ=255) aCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGAt < 1:4926694/60‑1 (MQ=255) cAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGa > 1:1171885/1‑58 (MQ=255) cAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGCAaccacc > 1:1340211/1‑71 (MQ=255) | TCGGTGAAAATTTCTACCTGTTTAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATACCGAAACCACC > AP009048/235974‑236114 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |