BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AP009048	= 236798	40 (0.710)	15 (0.570) +TTTAATATCAGTAAACCGGACATAACC	9/48	NT	37.3%	coding (732/732 nt)	dnaQ	DNA polymerase III epsilon subunit
*	?	AP009048	4124502 =	67 (1.190)	15 (0.570) +TTTAATATCAGTAAACCGGACATAACC	9/48	NT	37.3%	intergenic (+106/‑1)	damX/dam	hypothetical protein/DNA adenine methylase

Only 100 of 101 total aligned reads displayed.

TTGCCTGAAGCGCTGGATGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAACGGC  >  AP009048/4124435‑4124572

ttGCCTGAAGCGCTGGATGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATg                                                                     <  1:4529002/71‑1 (MQ=255)

  gCCTGAAGCGCTGGATGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATg                                                                     >  1:2093151/1‑69 (MQ=255)

   ccTGAAGCGCTGGATGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATgaag                                                                  <  1:1441862/71‑1 (MQ=255)

    cTGAAGCGCTGGATGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATgaag                                                                  >  1:473726/1‑70 (MQ=255)

      gaagaaaggcggaagttgcctctggcgagcataatttaatatcggtaaaccggacataaccCATGAAGaaa                                                               <  1:3209353‑M2/10‑1 (MQ=255)

      gaagaaaggcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGaaa                                                               <  1:2546348‑M2/10‑1 (MQ=255)

      gAAGCGCTGGATGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATgaagaa                                                                >  1:3856029/1‑70 (MQ=255)

      gAAGCGCTGGATGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATgaagaa                                                                >  1:3196836/1‑70 (MQ=255)

      gAAGCGCTGGATGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATgaaga                                                                 <  1:722293/69‑1 (MQ=255)

       aaGCGCTGGATGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGaaa                                                               <  1:1314342/70‑1 (MQ=255)

       aaGCGCTGGATGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGaaa                                                               >  1:441481/1‑70 (MQ=255)

        agaaaggcggaatttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGaaaaa                                                             <  1:4959083‑M2/12‑1 (MQ=255)

        agaaaggcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGaaaaa                                                             <  1:4548070‑M2/12‑1 (MQ=255)

        aGCGCTGGATGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGaaaaa                                                             >  1:3785280/1‑71 (MQ=255)

          cgcTGGATGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATc                                                           <  1:30043/71‑1 (MQ=255)

          cgcTGGATGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATc                                                           <  1:756597/71‑1 (MQ=255)

           gcTGGATGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATcg                                                          <  1:3967975/71‑1 (MQ=255)

            cTGGATGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATcgc                                                         >  1:854294/1‑71 (MQ=255)

                aTGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTTTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCtt                                                     >  1:3997263/1‑71 (MQ=255)

                   cTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCttttt                                                  <  1:1806331/71‑1 (MQ=255)

                   cTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCttttt                                                  <  1:809602/71‑1 (MQ=255)

                   cTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCttttt                                                  <  1:3482661/71‑1 (MQ=255)

                   cTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCtt                                                     >  1:2012555/1‑68 (MQ=255)

                   agttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCttttt                                                  <  1:1929044‑M2/23‑1 (MQ=255)

                    gttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATcgc                                                         >  1:1621655‑M2/48‑63 (MQ=255)

                    gttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCtttttt                                                 <  1:811342‑M2/24‑1 (MQ=255)

                     ttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTg                                                <  1:4486675‑M2/25‑1 (MQ=255)

                     ttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTg                                                <  1:2562799‑M2/25‑1 (MQ=255)

                     ttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTg                                                <  1:2441917‑M2/25‑1 (MQ=255)

                     ttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTg                                                <  1:2225046‑M2/25‑1 (MQ=255)

                     gTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCtttttt                                                 >  1:140010/1‑70 (MQ=255)

                      tCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATcgc                                                         >  1:724536/1‑61 (MQ=255)

                      tCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGa                                               <  1:1962047/71‑1 (MQ=255)

                        ggAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTg                                                >  1:4392382/1‑68 (MQ=255)

                        ggAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAg                                             >  1:4841058/1‑71 (MQ=255)

                        cctctggcgagcataatttaatatcagtaaaccggacataaccGATGAAGAAAAATCGCGCTTTTTTGaa                                              <  1:4410597‑M2/27‑1 (MQ=255)

                         gAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGt                                            <  1:2487915/71‑1 (MQ=255)

                         gAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGt                                            <  1:2031026/71‑1 (MQ=255)

                          aGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTg                                           >  1:2306053/1‑71 (MQ=255)

                              ttCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATc                                                           >  1:3017927/1‑51 (MQ=255)

                              ttCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTg                                                <  1:1611304/62‑1 (MQ=255)

                              ttCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAg                                             >  1:2442992/1‑65 (MQ=255)

                              ttCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTggg                                         >  1:3241547/1‑69 (MQ=255)

                               tctcCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCa                                       <  1:76492/70‑1 (MQ=255)

                               tctcCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAg                                      >  1:3193158/1‑71 (MQ=255)

                                gagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAgg                                     <  1:2379885‑M2/36‑1 (MQ=255)

                                ctcCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGa                                               >  1:1866973/1‑61 (MQ=255)

                                ctcCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAgg                                     >  1:4156355/1‑71 (MQ=255)

                                ctcCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAg                                      <  1:2709188/70‑1 (MQ=255)

                                  gcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGaa                                              >  1:4209103‑M2/34‑60 (MQ=255)

                                  gcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAgggg                                   >  1:505233‑M2/34‑71 (MQ=255)

                                  ccACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAgggg                                   >  1:2355495/1‑71 (MQ=255)

                                  ccACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAgggg                                   >  1:2052137/1‑71 (MQ=255)

                                  ccACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAgggg                                   >  1:4290513/1‑71 (MQ=255)

                                  ccACAGCCGGAGAAGGTATAATTAGTTAGTCAGCTTGAAGaaaaa                                                             <  1:3028778/45‑1 (MQ=255)

                                   cacaGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAggggg                                  >  1:759577/1‑71 (MQ=255)

                                    acaGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGt                                            >  1:2222211/1‑60 (MQ=255)

                                     taatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTggg                                         <  1:3850952‑M2/32‑1 (MQ=255)

                                     caGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATc                                                           >  1:1634383/1‑44 (MQ=255)

                                     caGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCgcgc                                                       >  1:4706014/1‑48 (MQ=255)

                                     caGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCgcgc                                                       >  1:744979/1‑48 (MQ=255)

                                      aGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGc                                 >  1:3327717/1‑69 (MQ=255)

                                       gCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGaaaa                                                              <  1:3587970/39‑1 (MQ=255)

                                       atttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAg                              >  1:289019‑M2/29‑71 (MQ=255)

                                        tttaatatcagtaaaccggacataaccCATGAAGaaaa                                                              >  1:2170500‑M2/28‑38 (MQ=255)

                                        tttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCtt                                                     <  1:3134088‑M2/20‑1 (MQ=255)

                                           gagaAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTg                                                <  1:2732478/49‑1 (MQ=255)

                                             gaAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATcgcg                                                        >  1:3840828/1‑39 (MQ=255)

                                             gaAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGt                                            <  1:2271389/51‑1 (MQ=255)

                                             gaAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTgg                                          >  1:1293562/1‑53 (MQ=255)

                                              aaGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATcccc                       >  1:3719301/1‑71 (MQ=255)

                                               tcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATcccc                       <  1:1883065‑M2/50‑1 (MQ=255)

                                                ggTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTg                     >  1:4783362/1‑71 (MQ=255)

                                                 gtgtAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGa                                               <  1:325426/44‑1 (MQ=255)

                                                  tgtAATTAGTTAGTCAGCATGAAGAAAAATCGCGCtttt                                                   <  1:1870476/39‑1 (MQ=255)

                                                  tgtAATTAGTTAGTCAGCATGAAGAAAAATCGCGCttt                                                    <  1:199815/38‑1 (MQ=255)

                                                  gtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCt                   >  1:4289712‑M2/18‑71 (MQ=255)

                                                   taaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCtt                  >  1:1335816‑M2/17‑71 (MQ=255)

                                                   gtAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCtt                  >  1:1385347/1‑71 (MQ=255)

                                                    tAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCtt                  >  1:1785984/1‑70 (MQ=255)

                                                    tAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCtt                  >  1:3913355/1‑70 (MQ=255)

                                                    tAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTtg                 <  1:2201338/71‑1 (MQ=255)

                                                    aaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCtt                  >  1:2825574‑M2/16‑70 (MQ=255)

                                                     aaTTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTtga                >  1:4446033/1‑71 (MQ=255)

                                                      aTTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGaa                                              >  1:4779259/1‑40 (MQ=255)

                                                      aTTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGaa                                              >  1:316147/1‑40 (MQ=255)

                                                      aTTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAg                              >  1:1506309/1‑56 (MQ=255)

                                                      aTTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTtgat               >  1:2227275/1‑71 (MQ=255)

                                                      aTTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTtgat               >  1:3414567/1‑71 (MQ=255)

                                                         agttagtCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGc                    >  1:3947818/1‑63 (MQ=255)

                                                           ttagtCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGc                                 >  1:1835950/1‑48 (MQ=255)

                                                               tCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTaaa      <  1:5154335/71‑1 (MQ=255)

                                                               tCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTaaa      <  1:3452347/71‑1 (MQ=255)

                                                               aaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTaaa      >  1:4380624‑M2/5‑71 (MQ=255)

                                                               aaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTaaa      >  1:2149102‑M2/5‑71 (MQ=255)

                                                                  cCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAACgg   <  1:1996276‑M2/70‑1 (MQ=255)

                                                                   cATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCa                                <  1:3808022/41‑1 (MQ=255)

                                                                   cATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAACgg   >  1:4754180/1‑70 (MQ=255)

                                                                   cATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAACGGc  <  1:802934/71‑1 (MQ=255)

                                                                   cATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGCGGCAAGTAAcc                         >  1:4537210/1‑48 (MQ=38)

TTGCCTGAAGCGCTGGATGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAACGGC  >  AP009048/4124435‑4124572

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.