| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 311361 = | 58 (1.030) | 3 (0.060) | 3/88 | NT | 6.4% | coding (26/228 nt) | ykgL | hypothetical protein |
| ? | AP009048 | 311384 = | 37 (0.760) | coding (49/228 nt) | ykgL | hypothetical protein | |||||
CATCTTAACAGTTTGAGTGAAAATGCAGGCTGCGCCGCAAAGGGAGGAGACTGAGTGGCGTGTTCAGTCTAAAAGAGGGTTGATGCCAGCATACAGGGGCGAAGCTGGTCAACAAGTCAACATTAAGATAATGGAATATTC > AP009048/311314‑311454 | acttgttgaccagcttcgcccctgtatgctggcatcaaccctcttttAGACTGAGTGGCGTGTTCAGTCTa > 1:3933058‑M1/48‑71 (MQ=255) ttgaccagcttcgcccctgtatgctggcatcaaccctctttgAGACTGAGTGGCGTGTTCAGTCTAAAaga > 1:1069442‑M1/43‑71 (MQ=255) aaCAGTTTGAGTGAAAATGCAGGCTGCGCCGCAAAGGGAGGAGACTGAGTGGCGTGTTCAGTCTaaaa < 1:3131086/68‑1 (MQ=255) cAGTTTGAGTGAAAATGCAGGCTGCGCCGCAAAGGGAGGAGACTGAGTGGCGTGTTCAGTCTAAAAGAggg < 1:4043274/71‑1 (MQ=255) gTTTGAGTGAAAATGCAGGCTGCGCCGCAAAGGGAGGAGACTGAGTGGCGTGTTCAGTCTAAAAGAGGGtt < 1:906024/71‑1 (MQ=255) gTTTGAGTGAAAATGCAGGCTGCGCCGCAAAGGGAGGAGACTGAGTGGCGTGTTCAGTCTAAAAGAGGGtt < 1:187782/71‑1 (MQ=255) aaaaTGCAGGCTGCGCCGCAAAGGGAGGAGACTGAGTGGCGTGTTCAGTCTAAAAGAGGGt > 1:4194255/1‑61 (MQ=255) aaaTGCAGGCTGCGCCGCAAAGGGAGGAGACTGAGTGGCGTGTTCAGTCTAAAAGAGGGTTGATGCCAGCa > 1:4332409/1‑71 (MQ=255) aaTGCAGGCTGCGCCGCAAAGGGAGGAGACTGAGTGGCGTGTTCAGTCTAAAAGAGGGTTGATGCCAGCa > 1:384998/1‑70 (MQ=255) aaTGCAGGCTGCGCCGCAAAGGGAGGAGACTGAGTGGCGTGTTCAGTCTAAAAGAGGGTTGATGCCAGCa > 1:5064972/1‑70 (MQ=255) aaTGCAGGCTGCGCCGCAAAGGGAGGAGACTGAGTGGCGTGTTCAGTCTAAAAGAGGGTTGATGCCAGCAt < 1:2616014/71‑1 (MQ=255) tGCAGGCTGCGCCGCAAAGGGAGGAGACTGAGTGGCGTGTTCAGTCTAAAAGAGGGTTGATGCCAGCATAc < 1:3428091/71‑1 (MQ=255) cAGGCTGCGCCGCAAAGGGAGGAGACTGAGTGGCGTGTTCAGTCTAAAAGAGGGTTGATGCCAGCATACAg < 1:693916/71‑1 (MQ=255) cAGGCTGCGCCGCAAAGGGAGGAGACTGAGTGGCGTGTTCAGTCTAAAAGAGGGTTGATGCCAGCATACAg < 1:1883371/71‑1 (MQ=255) cAGGCTGCGCCGCAAAGGGAGGAGACTGAGTGGCGTGTTCAGTCTAAAAGAGGGTTGATGCCAGCATACAg < 1:665499/71‑1 (MQ=255) aGGCTGCGCCGCAAAGGGAGGAGACTGAGTGGCGTGTTCAGTCTAAAagag < 1:562934/51‑1 (MQ=255) aGGCTGCGCCGCAAAGGGAGGAGACTGAGTGGCGTGTTCAGTCTAAAagag < 1:2188839/51‑1 (MQ=255) gCTGCGCCGCAAAGGGAGGAGACTGAGTGGCGTGTTCAGTCTAAAAGAGGGTTg < 1:2925121/54‑1 (MQ=255) gCTGCGCCGCAAAGGGAGGAGACTGAGTGGCGTGTTCAGTCTAAAAGAGGGTTGATGCCAGCATACAggg > 1:1906989/1‑70 (MQ=255) cTGCGCCGCAAAGGGAGGAGACTGAGTGGCGTGTTCAGTCTAAAAGAGGGTTGATGCCAGCATACAgggg > 1:356464/1‑70 (MQ=255) cTGCGCCGCAAAGGGAGGAGACTGAGTGGCGTGTTCAGTCTAAAAGAGGGTTGATGCCAGCATACAGGGGc < 1:346321/71‑1 (MQ=255) tGCGCCGCAAAGGGAGGAGACTGAGTGGCGTGTTCAGTCTAAAAGAGGGTTGAt > 1:758951/1‑54 (MQ=255) gccgcAAAGGGAGGAGACTGAGTGGCGTGTTCAGTCTAAAag < 1:3912657/42‑1 (MQ=255) gcAAAGGGAGGAGACTGAGTGGCGTGTTCAGTCTAAAAGAGGGTTGATGCCAGCATACAGGGGCGAAGCTg < 1:301772/71‑1 (MQ=255) cAAAGGGAGGAGACTGAGTGGCGTGTTCAGTCTAAAAGAGGGTTGAt > 1:450678/1‑47 (MQ=255) cAAAGGGAGGAGACTGAGTGGCGTGTTCAGTCTAAAAGAGGGTTGATGCCa > 1:2432989/1‑51 (MQ=255) cAAAGGGAGGAGACTGAGTGGCGTGTTCAGTCTAAAAGAGGGTTGATGCCAg > 1:2150450/1‑52 (MQ=255) cAAAGGGAGGAGACTGAGTGGCGTGTTCAGTCTAAAAGAGGGTTGATGCCAGCATACAGGGGCGAAGCTgg < 1:2158701/71‑1 (MQ=255) aaaGGGAGGAGACTGAGTGGCGTGTTCAGTCTAAAAGAGGGTTGATGCCAGCATa < 1:769517/55‑1 (MQ=255) aaGGGAGGAGACTGAGTGGCGTGTTCAGTCTaaaa > 1:654232/1‑35 (MQ=255) aaGGGAGGAGACTGAGTGGCGTGTTCAGTCTAAAaga < 1:4746892/37‑1 (MQ=255) aaGGGAGGAGACTGAGTGGCGTGTTCAGTCTAAAaga < 1:5146195/37‑1 (MQ=255) aaGGGAGGAGACTGAGTGGCGTGTTCAGTCTAAAaga < 1:5152012/37‑1 (MQ=255) aaGGGAGGAGACTGAGTGGCGTGTTCAGTCTAAAAGAGGGt > 1:2040251/1‑41 (MQ=255) aaGGGAGGAGACTGAGTGGCGTGTTCAGTCTAAAAGAGGGTTGATGCCAGCATACAGGGGCGAAGCTGGt > 1:3322827/1‑70 (MQ=255) tcttttagactgaacacgccactcagtctCAAAGAGGGTTGATGCCAGCATACAGGGGCGAAGCTGGTcaa > 1:1069442‑M2/30‑71 (MQ=255) ggaggaGACTGAGTGGCGTGTTCAGTCTAAAagag < 1:1607521/35‑1 (MQ=255) ggaggaGACTGAGTGGCGTGTTCAGTCTAAAAGAGGGTTGATGCCAGCATACAGGGGCGAAGCTGGTcaac < 1:840406/71‑1 (MQ=255) ggaggaGACTGAGTGGCGTGTTCAGTCTAAAAGAGGGTTGATGCCAGCATACAGGGGCGAAGCTGGTcaac < 1:547715/71‑1 (MQ=255) ggaggaGACTGAGTGGCGTGTTCAGTCTAAAAGAGGGTTGATGCCAGCATACAGGGGCGAAGCTGGTcaa > 1:3949868/1‑70 (MQ=255) gaggagACTGAGTGGCGTGTTCAGTCTAAAAGAGGGTTGATGCCAGCATACAgggg < 1:2836718/56‑1 (MQ=255) tagactgaacacgccactcagtctAAAAGAGGGTTGATGCCAGCATACAGGGGCGAAGCTGGTCAACAAGt > 1:3933058‑M2/25‑71 (MQ=255) agactgaacacgccactcagtctAAAAGAGGGTTGATGCCAGCATACAGGGGCGAAGCTGGTCAACAAGt > 1:3814163‑M2/24‑70 (MQ=255) AGACTGAGTGGCGTGTTCAGTCTAAAAGAGGGTTGATGCCAGCATACAGGGGCGAAGCTGGTCAACAAGTc > 1:4312871‑M1/1‑71 (MQ=255) GACTGAGTGGCGTGTTCAGTCTAAAAGAGGGTTGa < 1:4211542‑M1/35‑1 (MQ=255) GACTGAGTGGCGTGTTCAGTCTAAAAGAGGGTTGa < 1:4217383‑M1/35‑1 (MQ=255) ACTGAGTGGCGTGTTCAGTCTAAAAGAGGGTTGATGCCAGCATACAGGGGCGAAGCTGGTCAACAAGTCaa > 1:3657781‑M1/1‑71 (MQ=255) ACTGAGTGGCGTGTTCAGTCTAAAAGAGGGTTGATGCCAGCATACAGGGGCGAAGCTGGTCAACAAGTCaa < 1:118098‑M1/71‑1 (MQ=255) ACTGAGTGGCGTGTTCAGTCTAAAAGAGGGTTGATGCCAGCATACAGGGGCGAAGCTGGTCAACAAGTCa < 1:3998228‑M1/70‑1 (MQ=255) GAGTGGCGTGTTCAGTCTAAAAGAGGGTTGATGCCAGCATACAGGGGCGAAg > 1:3988802‑M1/1‑52 (MQ=255) gTGGCGTGTTCAGTCTAAAAGAGGGTTGATGCCAGCATACAGGGGCGAAGCTGGTCAACAAGTCAACATTa < 1:116083/71‑1 (MQ=255) gTGGCGTGTTCAGTCTAAAAGAGGGTTGATGCCAGCATACAGGGGCGAAGCTGGTCAACAAGTCAACATTa < 1:1912918/71‑1 (MQ=255) tgtTCAGTCTAAAAGAGGGTTGATGCCAGCATACAggg < 1:170588/38‑1 (MQ=255) tgtTCAGTCTAAAAGAGGGTTGATGCCAGCATACAg < 1:185535/36‑1 (MQ=255) tgtTCAGTCTAAAAGAGGGTTGATGCCAGCATACAGGGGCGAAGCTGGTCAACAAGTCAACATTAAGATaa < 1:3125677/71‑1 (MQ=255) ttCAGTCTAAAAGAGGGTTGATGCCAGCATACAgg > 1:220815/1‑35 (MQ=255) cagtctAAAAGAGGGTTGATGCCAGCATACAGGGGCGAAg > 1:3718209‑M2/7‑40 (MQ=255) cagtctAAAAGAGGGTTGATGCCAGCATACAGGGGCGAAGCTGGTCAACAAGTCAACAt < 1:707508‑M2/53‑1 (MQ=255) cagtctAAAAGAGGGTTGATGCCAGCATACAGGGGCGAAGCTGGTCAACAAGTCAACATTa < 1:2651345‑M2/55‑1 (MQ=255) agtctAAAAGAGGGTTGATGCCAGCATACAGGGGCGAAGCTGGTCAACAAGTCTACATTa < 1:2929585‑M2/55‑1 (MQ=255) agtctAAAAGAGGGTTGATGCCAGCATACAGGGGCGAAGCTGGTCAACAAGTCAACATTAAGATAATGGa < 1:126936‑M2/65‑1 (MQ=255) tctAAAAGAGGGTTGATGCCAGCATACAGGGGCGAAGCTGGTCAACAAGTCAACATTAAGATAATg < 1:2980175‑M2/63‑1 (MQ=255) tctAAAAGAGGGTTGATGCCAGCATACAGGGGCGAAGCTGGTCAACAAGTCAACATTAAGATAATGGAata < 1:5109183‑M2/68‑1 (MQ=255) tAAAAGAGGGTTGATGCCAGCATACAGGGGCGAAGCTGGTCAACAAGTCAACATTAAGATa > 1:3493253‑M2/2‑61 (MQ=255) aaaaGAGGGTTGATGCCAGCATACAGGGGCGAAGCTGGTCAACAAGTCAACATTAAGATAATGGAATATTc > 1:3790580/1‑71 (MQ=255) | CATCTTAACAGTTTGAGTGAAAATGCAGGCTGCGCCGCAAAGGGAGGAGACTGAGTGGCGTGTTCAGTCTAAAAGAGGGTTGATGCCAGCATACAGGGGCGAAGCTGGTCAACAAGTCAACATTAAGATAATGGAATATTC > AP009048/311314‑311454 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |